Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20nasuta_20[genbank_20GCA_5F002222885.1_202017-07-20] 46,105 sequences; 137,224,182 total letters Query= NC_028798.1 Length=50882 Score E Sequences producing significant alignments: (Bits) Value SEQ25496 84.2 7e-12 SEQ24884 84.2 7e-12 >SEQ25496 Length=2929 Score = 84.2 bits (92), Expect = 7e-12 Identities = 67/78 (86%), Gaps = 2/78 (3%) Strand=Plus/Plus Query 3962 CGTAGCTCAATTGGTCAGAGCAGCGGTCTCCAAAGCCGCCGGCTGCAGGTTCGAGTCCTG 4021 ||| |||||||||| ||||||||||||||||||| |||| || ||||||||| ||||||| Sbjct 403 CGTGGCTCAATTGG-CAGAGCAGCGGTCTCCAAAACCGCAGGTTGCAGGTTCAAGTCCTG 461 Query 4022 CCGTGTCTGCAACCACCC 4039 || |||||| ||||| Sbjct 462 TCGCCCCTGCAA-CACCC 478 >SEQ24884 Length=1939 Score = 84.2 bits (92), Expect = 7e-12 Identities = 209/304 (69%), Gaps = 20/304 (7%) Strand=Plus/Minus Query 4677 AACGACCCGCCC-ACGCAGGCCCAGAAGGACCGGCTGTGGGAGCACATCGTCCGCTCCAT 4735 |||||||||||| ||| | | | |||| || | | ||||| || ||||||| ||||| Sbjct 747 AACGACCCGCCCCACG-ACGACGAGAAAGAGCAGTTGTGGTCGCGCATCGTCGCGTCCAT 689 Query 4736 CAACGCGGGCTACGGCGTCGTCATGAAC---TGGGTCGCCCCGCCGTCGAACAAGCCACG 4792 ||||| ||| || || | |||| |||||| |||||| ||| | || || Sbjct 688 CAACGGCGGCGTAGGGGTGGCGGCGAACATCTGGGTC---CCGCCGGAAAACTACCCGCG 632 Query 4793 CGGTGTGA-AGGGCTC---GGTCAGCCCGCGCTACAGCGGCGGCACCA-CATACCACTAC 4847 || || | ||| || | || || |||| |||| || | ||| | ||||| Sbjct 631 -GGCGTCCTACACCTCCACGGAGAACCTGCACTACGGCGGTGGATTCGTCATGC-ACTAC 574 Query 4848 GTCGCGTGCATGGGCTACGAC---GACACCCCCGGCGCTCGGGCA-GTGTGGATCGCCGA 4903 ||||| |||||| |||| | |||||| ||| | || | || || ||| | ||||| Sbjct 573 CTCGCGGTCATGGGGTACGCCCGCGACACCGGCGGTG-TCCGCCACGTCTGGCTGGCCGA 515 Query 4904 CAGCGGCTTCCAGCCGCAGGGCTACTGGATCTCGTTTGACCAGTGCGCCACGCTGATCCC 4963 |||||| ||| | ||||| |||| ||| | |||| ||||||| |||||| ||||||| Sbjct 514 CAGCGGGTTCGACCCGCACGGCTCGTGGGTGACGTTCGACCAGTTCGCCACCATGATCCC 455 Query 4964 GCCG 4967 ||| Sbjct 454 CCCG 451 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 162611721820440