Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20nasuta_20[genbank_20GCA_5F002222885.1_202017-07-20] 46,105 sequences; 137,224,182 total letters Query= NC_028827.1 Length=50165 Score E Sequences producing significant alignments: (Bits) Value SEQ32872 612 6e-171 SEQ43235 118 3e-22 seq963 87.8 6e-13 >SEQ32872 Length=2637 Score = 612 bits (678), Expect = 6e-171 Identities = 1202/1759 (68%), Gaps = 51/1759 (3%) Strand=Plus/Minus Query 38684 AGACCCTTGCG--GGTTGCCCCGGTCGAGTCGAACGCACCGGCCTTGATCAAGGACTCGA 38741 || |||||||| ||| ||| || |||||||| || ||||||||||||| || ||| Sbjct 1828 AGGCCCTTGCGCGGGTGGCCGAGG--GAGTCGAAGGCGCCGGCCTTGATCAGTGAGTCGG 1771 Query 38742 TGGCGCGCTTGCT-CA--CGGTGGCCTGAGTCGCTGCCTTCAAGA-AGTCCGGCAGGGAG 38797 || |||||||| | || ||||||| |||| | || || |||| | | | Sbjct 1770 TGACGCGCTTGTTGCAGGCGGTGGC----GTCGATCTTGTCGAGGTAGTCGGAGAAGTCC 1715 Query 38798 GTGAACTTCCCCCAGGCTTCCCGCAGTTCGGCGATCTCGGCGACCATGCCCTCGCCCACG 38857 |||||||||||| | || ||| || |||| | |||| | | ||||||| ||| Sbjct 1714 GTGAACTTCCCCTTCTCCTCGCGCGCCGCGATGATCGAGTCGACGACGTCCTCGCCGACG 1655 Query 38858 TTCTTCACGGCGGTCAGTCCGAAGCGGATCTCGCTCTCCCCGTTCGGGGTGAAGGAGCTG 38917 || || ||| || ||||||||||| || ||| ||| ||| || | || || Sbjct 1654 TTGCGGACCGCGCCGAGGCCGAAGCGGATGTC---CTCGCCGA-CGGACTGGA--AGGTG 1601 Query 38918 TTCGAGACCGACACGT-------CGGGCGGCAGGACCCGCAGGCCCATGCGCCGCGCCTC 38970 | || | ||| ||| ||||| | || || |||| || | | | || || Sbjct 1600 T---AGGCGGACTCGTTGACGTCCGGGCTG-AGCACGCGCACCCCGAGGTGGCGGCAGTC 1545 Query 38971 GCCGAGGTACGTGGCCATCTTGTTCTTGTCGTCGCCCACCGAGGTGAGCACGGCCGCCAT 39030 | ||||||| | || ||||| ||| | ||| ||||||||||||||| |||||||| Sbjct 1544 GGCGAGGTAGATCGCGGACTTGTCCTTCTTGTCCGCCACCGAGGTGAGCAGCGCCGCCAT 1485 Query 39031 GTACTCGGCCGGGTAGTGCGTCTTCAGGTACGCCGTGCGGTAGGCGATGAGCCCGTACGC 39090 ||||||||| | ||| ||| ||| ||||| || || | | || | || ||||| | Sbjct 1484 GTACTCGGCGGTGTAATGCTCCTTGAGGTAGGCGGTCCAGAAGCTCACCAGACCGTAGCC 1425 Query 39091 CGCAGAGTGCGCCTTGTTGAAGGCGTACCCGGCGAAGGGTACGAGCACGTCCCACACCGC 39150 || | ||||| |||||||| ||||| |||||||| || | | | |||||||| || Sbjct 1424 GGCGGCGTGCGACTTGTTGAGCGCGTAGCCGGCGAACGGCAGCACCGTGTCCCACAGGGC 1365 Query 39151 CTGGATGGCGCTGTCCGAGTAGCCTCGCTCGCGCGC-TCCCTTCTG-GAAGTTCACGAAC 39208 ||||| ||| ||| |||||||| | | | | | || | | ||| || ||||| Sbjct 1364 CTGGACGGCCTCGTCGGAGTAGCC--GTTGGACTTCATGCCGGCGGCGAACTTGTCGAAC 1307 Query 39209 TCCTTGGCCAGAACCTCGGGCTTCTTCTTGCCCATGGCCCGACGCAGCAGGTCGGCCTGG 39268 ||||||||||| ||||||||||||||||||||||||||| || | | |||||||| Sbjct 1306 TCCTTGGCCAGCACCTCGGGCTTCTTCTTGCCCATGGCCTTGCGGAACCCGTCGGCCTCA 1247 Query 39269 CCCAGGCTGTAGCCAGCGAGGATCTGCGCCGCCTTCTGCACCTGCTCCTGGTAGATGATG 39328 || | ||||| |||| |||||| | || | |||||||||||| | |||| Sbjct 1246 CCGGCGGTGTAGTTCGCGACCTTCTGCGAGATCCTCATGATCTGCTCCTGGTACACGATG 1187 Query 39329 AGCCCGTACGTCGGGTCCAGGATCTCCCGCAGGGGCTCCTCCACCTCGGGGTGAATCGGC 39388 || ||||| ||| |||||||| ||| | || ||| | | ||| ||||| |||||| Sbjct 1186 AGACCGTAGGTCTCCTCCAGGATGTCCTTGATGGACTCGGCGAGCTCCGGGTGGATCGGC 1127 Query 39389 GAGATCGCCTGCTGTCCATTCTTCCGGAGGGCATAGTTCGTGTGTGAGCCAACGCCCATC 39448 ||||| || | || ||||| ||| || |||| | ||| | || || |||||| Sbjct 1126 TCGATCGGCTTGCGGCCGTTCTTGCGGTCCGCGTAGTCCCAGTGCGCCCCGACACCCATC 1067 Query 39449 GGACCCGGACGGTACAGCGCGACGACGGCCGAGATGTCCTCGAAGTTGTCGGGCTTCAGC 39508 || ||||| ||||||||||| | | ||| ||||| | |||| | |||||||| Sbjct 1066 GGGCCCGGCCGGTACAGCGCCAGGGACGCCACAATGTCGTTGAAGCCGGTGGGCTTCATG 1007 Query 39509 AGGCGGAGCAGGGAGCGCATCGCACCGCCGTCGAGCTGGAACACCGAGAGCGTGTCACCC 39568 | |||||| |||| | ||| ||| |||||||| | |||||||||||| Sbjct 1006 CGCTTGAGCAGTTCCTGCATGCCGCCGGAGTCCAGCTGGAAGATGCCGAGCGTGTCACCG 947 Query 39569 TTGGCCAGCAGCTCGTAGGTCGGGGCGTCGTCCAGCGGGATGTTCTCCAGGTCGACGTGC 39628 ||||||||| || |||| || | |||||| || | |||||||||||||| || | Sbjct 946 CGGGCCAGCAGTTCATAGGACGCCGGGTCGTCGGTCGACAGGTTCTCCAGGTCGAAGTCC 887 Query 39629 TCCCCACGGTTACGACGGATGTTCTCGACGGCGTCGCCCATGATCGTGAGGTTCCGCAGG 39688 || || ||||| ||||||||| | | |||| | |||| |||||||| ||||| Sbjct 886 TCGCCCCGGTTCTTCTTGATGTTCTCCAGGCAGTCGGCGATGACGGTGAGGTTGCGCAGC 827 Query 39689 CCGAGGAAGTCCATCTTGACCGCGCCCATGCTCTCGCACTGGGGGTAGTCCCACTGCGTG 39748 || |||||||||||||| | | ||| ||| ||| || |||||| ||| ||| Sbjct 826 CCCAGGAAGTCCATCTTCAGCAGGCCGATGGCCTCACAGGCCGGGTAGGGCCAGCCGGTG 767 Query 39749 ACGGTGACGCCGTCCGCAGGACGGACCCACACCGGAAGGTGATCGACCAGGGGCTCGTTG 39808 | | ||||||| || || ||||| ||| | ||| |||| ||| ||| | | Sbjct 766 ATCAGGGCGCCGTCGTTGGGGCGCTTCCACATCGGGATGTGGTCGAGCAGCGGCACCGAG 707 Query 39809 GACATGATCACACCGGCCGCGTGCACGCCCATCTGGCGAACCAGACCTTCGAGCCCGAGC 39868 | ||||||||| || ||||| |||| |||||| |||| || || || ||||| Sbjct 706 GCCATGATCACTGCGCAGGCGTGGCCGCCGGCCTGGCGGACCACGCCCTCCAGGCCGAGG 647 Query 39869 GCAGTGTCGATCACCTCCTTCGAGTCCTTGTCGTTCTCGTACAGGCCCCGGATCTCGCCC 39928 || |||| | |||||| || ||| ||||| ||| |||||||| | Sbjct 646 GCGTCGTCGTAGATCTCCTTGACCACCGGATCGGTCTCGATGAGGGTGCGGATCTCCGCG 587 Query 39929 GCCTCGTCGTAGCGCGGGTGCTCCGGGTTGAAGATCCCCTCCAGGGGCAT---CGACGCG 39985 ||| || ||||||||||||||||||| | | ||| || ||| || || | ||| Sbjct 586 GCCGCGCCGTAGCGCGGGTGCTCCGGATCCATGATGCCGGACAGCGGGATGTCCTTCGCC 527 Query 39986 CCCATCACATCGGCCGGGTACGCCTTGGTCAGCTTCTCGCCGACCTGGAA---GGGCT-- 40040 || | | || | || |||||||| | | ||| ||| |||||| ||||| Sbjct 526 GCCTGCGCCGGGGGCAGG---GCCTTGGTGATCCGGTCGGCGATCTGGAAGCCGGGCTGG 470 Query 40041 -TGTCCAGCACGCGGGCCGCGTCCTTCATCGCGTTGCGCGCCTTGATCCGGCCGAAGGTC 40099 || | ||||||| |||||||| ||||| | | ||| | | ||||||||| Sbjct 469 CCGTGGTGGGCGCGGGCGGCGTCCTTGATCGCCTGCTTGGTCTTCACCGTGCCGAAGGTG 410 Query 40100 CCGATCTGTGCGACCTTGTCGGCCCCGTACTTCTCGGTGACGTACCGGATGACCTCGCCG 40159 || ||| ||||||||||| | || | |||| || | |||| ||||| | || || Sbjct 409 ATGACCTGGGCGACCTTGTCCTCGCCCCAGTTCTGGGCGGCGTAGCGGATCATCT---CG 353 Query 40160 CGACGCCGGTCAT---CGAAGTCGATGTCAACGTCGGGCATGGACACGCGCTCGGGGTTC 40216 ||||||||||| ||||||||||||| | ||||| ||| ||| || ||||| Sbjct 352 GAACGCCGGTCATCGGCGAAGTCGATGTCGATATCGGGGGCGGAGGGGCGTTCCGGGTTG 293 Query 40217 AGGAACCGCTCGAAGATGAGCCCGTGCTCCAGTGGATCGAGGTCGGTGATCCCGAGGCAG 40276 ||||| |||||||| || ||||||||||| | || |||| || ||||||| || | Sbjct 292 AGGAATCGCTCGAACATCAGCCCGTGCTCGATGGGGTCGATGTTGGTGATCGTCAGTGCG 233 Query 40277 TAGGCGACCAGCGAACCGGCTGCCGAGCCTCGCCCAGGACCGACCCACACGCCGTTCTCC 40336 ||||||||||| | ||||| || ||||| || || || ||||| | | |||| | Sbjct 232 TAGGCGACCAGGGCGCCGGCGGCGGAGCCACGGCCCGGGCCGACGGAGATGCCGATGGAG 173 Query 40337 TTGGCCCAGCCGATGAAGTCGGCGACGACCAGGAAGTAGGACGGGAAGCCCATCTGGATG 40396 ||| ||||| |||||||||||| ||||||||||||||| ||||| || | | Sbjct 172 CGGGCGTGCTTGATGAGGTCGGCGACGACGAGGAAGTAGGACGGGTAGCCCTTCATGTCG 113 Query 40397 ATCATGTCGATCTCGTACT 40415 || | ||||||||||| Sbjct 112 ATGACACTGATCTCGTACT 94 >SEQ43235 Length=559 Score = 118 bits (130), Expect = 3e-22 Identities = 176/250 (70%), Gaps = 0/250 (0%) Strand=Plus/Plus Query 40768 GTGGCTGTCGTTGGTGACCACCGGGGTGAGCGCGAGGTGCTTGCCCAGCCGGTAGAGGTC 40827 ||||| |||||||||||||| ||| | ||| |||||| | || | | | |||||| Sbjct 1 GTGGCAGTCGTTGGTGACCAGCGGCGGGAGGGCGAGGCGGCGTCCGATCTCGAGGAGGTC 60 Query 40828 GTCGCGGACGCGCCGCTCGATCTCCAGGCCGTGGTCCATGATCTCCAGGAAGTACCGGTC 40887 ||| ||||| ||| |||||| ||||||||||||||||| ||| |||||||| ||| Sbjct 61 GTCCCGGACCCGCTTCTCGATGGACAGGCCGTGGTCCATGAGCTCGAGGAAGTAGTTGTC 120 Query 40888 ACGACCGAACACCTCCAGGTACCGGCCAGCCTCCGCAACGGCCTGGTCGTACTGCCCGAG 40947 || ||| | | ||| | | | || || | | |||| || | |||| ||||| Sbjct 121 GCGGCCGTAGATGTCCTGCCATTTCGCCGCGGCCTCGAGCGCCTCGTTGAACTGGCCGAG 180 Query 40948 GTTGAGCCGGGTCATGATCGCACCGCCAGGGCAGCCCGTGGTGACGATCAGGCCCTCGTT 41007 ||||||||| | | | ||| |||||||| |||||| |||| ||| ||| Sbjct 181 CCGCAGCCGGGTCTGCACCTCGCCGGAGGGGCAGCCGGTGGTGGCGATGCTGCCGTCGGC 240 Query 41008 GTGCTCGGCG 41017 |||||||||| Sbjct 241 GTGCTCGGCG 250 >seq963 Length=26998 Score = 87.8 bits (96), Expect = 6e-13 Identities = 81/103 (79%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 14516 GTCCGCGCTGGGCAACCTCGGGTCCACCCTGATGGACGCGGGCAAGAAGCTGATCCAGGG 14575 ||||||||| | ||| |||| || ||| | ||| |||||||| ||||| ||||| Sbjct 16394 GTCCGCGCTTGCGAACATCGGCAGCATCCTCGTCGACTCGGGCAAGGCACTGATTCAGGG 16453 Query 14576 CTTCATCAACGGCATCAAGAACATGTTCGGCTCGGTGAAGGAC 14618 ||||||||||||||||||| ||||||||| ||||| |||| Sbjct 16454 CTTCATCAACGGCATCAAGGCGATGTTCGGCAAGGTGACGGAC 16496 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 160318577997270