Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20nasuta_20[genbank_20GCA_5F002222885.1_202017-07-20]
46,105 sequences; 137,224,182 total letters
Query= NC_028827.1
Length=50165
Score E
Sequences producing significant alignments: (Bits) Value
SEQ32872 612 6e-171
SEQ43235 118 3e-22
seq963 87.8 6e-13
>SEQ32872
Length=2637
Score = 612 bits (678), Expect = 6e-171
Identities = 1202/1759 (68%), Gaps = 51/1759 (3%)
Strand=Plus/Minus
Query 38684 AGACCCTTGCG--GGTTGCCCCGGTCGAGTCGAACGCACCGGCCTTGATCAAGGACTCGA 38741
|| |||||||| ||| ||| || |||||||| || ||||||||||||| || |||
Sbjct 1828 AGGCCCTTGCGCGGGTGGCCGAGG--GAGTCGAAGGCGCCGGCCTTGATCAGTGAGTCGG 1771
Query 38742 TGGCGCGCTTGCT-CA--CGGTGGCCTGAGTCGCTGCCTTCAAGA-AGTCCGGCAGGGAG 38797
|| |||||||| | || ||||||| |||| | || || |||| | | |
Sbjct 1770 TGACGCGCTTGTTGCAGGCGGTGGC----GTCGATCTTGTCGAGGTAGTCGGAGAAGTCC 1715
Query 38798 GTGAACTTCCCCCAGGCTTCCCGCAGTTCGGCGATCTCGGCGACCATGCCCTCGCCCACG 38857
|||||||||||| | || ||| || |||| | |||| | | ||||||| |||
Sbjct 1714 GTGAACTTCCCCTTCTCCTCGCGCGCCGCGATGATCGAGTCGACGACGTCCTCGCCGACG 1655
Query 38858 TTCTTCACGGCGGTCAGTCCGAAGCGGATCTCGCTCTCCCCGTTCGGGGTGAAGGAGCTG 38917
|| || ||| || ||||||||||| || ||| ||| ||| || | || ||
Sbjct 1654 TTGCGGACCGCGCCGAGGCCGAAGCGGATGTC---CTCGCCGA-CGGACTGGA--AGGTG 1601
Query 38918 TTCGAGACCGACACGT-------CGGGCGGCAGGACCCGCAGGCCCATGCGCCGCGCCTC 38970
| || | ||| ||| ||||| | || || |||| || | | | || ||
Sbjct 1600 T---AGGCGGACTCGTTGACGTCCGGGCTG-AGCACGCGCACCCCGAGGTGGCGGCAGTC 1545
Query 38971 GCCGAGGTACGTGGCCATCTTGTTCTTGTCGTCGCCCACCGAGGTGAGCACGGCCGCCAT 39030
| ||||||| | || ||||| ||| | ||| ||||||||||||||| ||||||||
Sbjct 1544 GGCGAGGTAGATCGCGGACTTGTCCTTCTTGTCCGCCACCGAGGTGAGCAGCGCCGCCAT 1485
Query 39031 GTACTCGGCCGGGTAGTGCGTCTTCAGGTACGCCGTGCGGTAGGCGATGAGCCCGTACGC 39090
||||||||| | ||| ||| ||| ||||| || || | | || | || ||||| |
Sbjct 1484 GTACTCGGCGGTGTAATGCTCCTTGAGGTAGGCGGTCCAGAAGCTCACCAGACCGTAGCC 1425
Query 39091 CGCAGAGTGCGCCTTGTTGAAGGCGTACCCGGCGAAGGGTACGAGCACGTCCCACACCGC 39150
|| | ||||| |||||||| ||||| |||||||| || | | | |||||||| ||
Sbjct 1424 GGCGGCGTGCGACTTGTTGAGCGCGTAGCCGGCGAACGGCAGCACCGTGTCCCACAGGGC 1365
Query 39151 CTGGATGGCGCTGTCCGAGTAGCCTCGCTCGCGCGC-TCCCTTCTG-GAAGTTCACGAAC 39208
||||| ||| ||| |||||||| | | | | | || | | ||| || |||||
Sbjct 1364 CTGGACGGCCTCGTCGGAGTAGCC--GTTGGACTTCATGCCGGCGGCGAACTTGTCGAAC 1307
Query 39209 TCCTTGGCCAGAACCTCGGGCTTCTTCTTGCCCATGGCCCGACGCAGCAGGTCGGCCTGG 39268
||||||||||| ||||||||||||||||||||||||||| || | | ||||||||
Sbjct 1306 TCCTTGGCCAGCACCTCGGGCTTCTTCTTGCCCATGGCCTTGCGGAACCCGTCGGCCTCA 1247
Query 39269 CCCAGGCTGTAGCCAGCGAGGATCTGCGCCGCCTTCTGCACCTGCTCCTGGTAGATGATG 39328
|| | ||||| |||| |||||| | || | |||||||||||| | ||||
Sbjct 1246 CCGGCGGTGTAGTTCGCGACCTTCTGCGAGATCCTCATGATCTGCTCCTGGTACACGATG 1187
Query 39329 AGCCCGTACGTCGGGTCCAGGATCTCCCGCAGGGGCTCCTCCACCTCGGGGTGAATCGGC 39388
|| ||||| ||| |||||||| ||| | || ||| | | ||| ||||| ||||||
Sbjct 1186 AGACCGTAGGTCTCCTCCAGGATGTCCTTGATGGACTCGGCGAGCTCCGGGTGGATCGGC 1127
Query 39389 GAGATCGCCTGCTGTCCATTCTTCCGGAGGGCATAGTTCGTGTGTGAGCCAACGCCCATC 39448
||||| || | || ||||| ||| || |||| | ||| | || || ||||||
Sbjct 1126 TCGATCGGCTTGCGGCCGTTCTTGCGGTCCGCGTAGTCCCAGTGCGCCCCGACACCCATC 1067
Query 39449 GGACCCGGACGGTACAGCGCGACGACGGCCGAGATGTCCTCGAAGTTGTCGGGCTTCAGC 39508
|| ||||| ||||||||||| | | ||| ||||| | |||| | ||||||||
Sbjct 1066 GGGCCCGGCCGGTACAGCGCCAGGGACGCCACAATGTCGTTGAAGCCGGTGGGCTTCATG 1007
Query 39509 AGGCGGAGCAGGGAGCGCATCGCACCGCCGTCGAGCTGGAACACCGAGAGCGTGTCACCC 39568
| |||||| |||| | ||| ||| |||||||| | ||||||||||||
Sbjct 1006 CGCTTGAGCAGTTCCTGCATGCCGCCGGAGTCCAGCTGGAAGATGCCGAGCGTGTCACCG 947
Query 39569 TTGGCCAGCAGCTCGTAGGTCGGGGCGTCGTCCAGCGGGATGTTCTCCAGGTCGACGTGC 39628
||||||||| || |||| || | |||||| || | |||||||||||||| || |
Sbjct 946 CGGGCCAGCAGTTCATAGGACGCCGGGTCGTCGGTCGACAGGTTCTCCAGGTCGAAGTCC 887
Query 39629 TCCCCACGGTTACGACGGATGTTCTCGACGGCGTCGCCCATGATCGTGAGGTTCCGCAGG 39688
|| || ||||| ||||||||| | | |||| | |||| |||||||| |||||
Sbjct 886 TCGCCCCGGTTCTTCTTGATGTTCTCCAGGCAGTCGGCGATGACGGTGAGGTTGCGCAGC 827
Query 39689 CCGAGGAAGTCCATCTTGACCGCGCCCATGCTCTCGCACTGGGGGTAGTCCCACTGCGTG 39748
|| |||||||||||||| | | ||| ||| ||| || |||||| ||| |||
Sbjct 826 CCCAGGAAGTCCATCTTCAGCAGGCCGATGGCCTCACAGGCCGGGTAGGGCCAGCCGGTG 767
Query 39749 ACGGTGACGCCGTCCGCAGGACGGACCCACACCGGAAGGTGATCGACCAGGGGCTCGTTG 39808
| | ||||||| || || ||||| ||| | ||| |||| ||| ||| | |
Sbjct 766 ATCAGGGCGCCGTCGTTGGGGCGCTTCCACATCGGGATGTGGTCGAGCAGCGGCACCGAG 707
Query 39809 GACATGATCACACCGGCCGCGTGCACGCCCATCTGGCGAACCAGACCTTCGAGCCCGAGC 39868
| ||||||||| || ||||| |||| |||||| |||| || || || |||||
Sbjct 706 GCCATGATCACTGCGCAGGCGTGGCCGCCGGCCTGGCGGACCACGCCCTCCAGGCCGAGG 647
Query 39869 GCAGTGTCGATCACCTCCTTCGAGTCCTTGTCGTTCTCGTACAGGCCCCGGATCTCGCCC 39928
|| |||| | |||||| || ||| ||||| ||| |||||||| |
Sbjct 646 GCGTCGTCGTAGATCTCCTTGACCACCGGATCGGTCTCGATGAGGGTGCGGATCTCCGCG 587
Query 39929 GCCTCGTCGTAGCGCGGGTGCTCCGGGTTGAAGATCCCCTCCAGGGGCAT---CGACGCG 39985
||| || ||||||||||||||||||| | | ||| || ||| || || | |||
Sbjct 586 GCCGCGCCGTAGCGCGGGTGCTCCGGATCCATGATGCCGGACAGCGGGATGTCCTTCGCC 527
Query 39986 CCCATCACATCGGCCGGGTACGCCTTGGTCAGCTTCTCGCCGACCTGGAA---GGGCT-- 40040
|| | | || | || |||||||| | | ||| ||| |||||| |||||
Sbjct 526 GCCTGCGCCGGGGGCAGG---GCCTTGGTGATCCGGTCGGCGATCTGGAAGCCGGGCTGG 470
Query 40041 -TGTCCAGCACGCGGGCCGCGTCCTTCATCGCGTTGCGCGCCTTGATCCGGCCGAAGGTC 40099
|| | ||||||| |||||||| ||||| | | ||| | | |||||||||
Sbjct 469 CCGTGGTGGGCGCGGGCGGCGTCCTTGATCGCCTGCTTGGTCTTCACCGTGCCGAAGGTG 410
Query 40100 CCGATCTGTGCGACCTTGTCGGCCCCGTACTTCTCGGTGACGTACCGGATGACCTCGCCG 40159
|| ||| ||||||||||| | || | |||| || | |||| ||||| | || ||
Sbjct 409 ATGACCTGGGCGACCTTGTCCTCGCCCCAGTTCTGGGCGGCGTAGCGGATCATCT---CG 353
Query 40160 CGACGCCGGTCAT---CGAAGTCGATGTCAACGTCGGGCATGGACACGCGCTCGGGGTTC 40216
||||||||||| ||||||||||||| | ||||| ||| ||| || |||||
Sbjct 352 GAACGCCGGTCATCGGCGAAGTCGATGTCGATATCGGGGGCGGAGGGGCGTTCCGGGTTG 293
Query 40217 AGGAACCGCTCGAAGATGAGCCCGTGCTCCAGTGGATCGAGGTCGGTGATCCCGAGGCAG 40276
||||| |||||||| || ||||||||||| | || |||| || ||||||| || |
Sbjct 292 AGGAATCGCTCGAACATCAGCCCGTGCTCGATGGGGTCGATGTTGGTGATCGTCAGTGCG 233
Query 40277 TAGGCGACCAGCGAACCGGCTGCCGAGCCTCGCCCAGGACCGACCCACACGCCGTTCTCC 40336
||||||||||| | ||||| || ||||| || || || ||||| | | |||| |
Sbjct 232 TAGGCGACCAGGGCGCCGGCGGCGGAGCCACGGCCCGGGCCGACGGAGATGCCGATGGAG 173
Query 40337 TTGGCCCAGCCGATGAAGTCGGCGACGACCAGGAAGTAGGACGGGAAGCCCATCTGGATG 40396
||| ||||| |||||||||||| ||||||||||||||| ||||| || | |
Sbjct 172 CGGGCGTGCTTGATGAGGTCGGCGACGACGAGGAAGTAGGACGGGTAGCCCTTCATGTCG 113
Query 40397 ATCATGTCGATCTCGTACT 40415
|| | |||||||||||
Sbjct 112 ATGACACTGATCTCGTACT 94
>SEQ43235
Length=559
Score = 118 bits (130), Expect = 3e-22
Identities = 176/250 (70%), Gaps = 0/250 (0%)
Strand=Plus/Plus
Query 40768 GTGGCTGTCGTTGGTGACCACCGGGGTGAGCGCGAGGTGCTTGCCCAGCCGGTAGAGGTC 40827
||||| |||||||||||||| ||| | ||| |||||| | || | | | ||||||
Sbjct 1 GTGGCAGTCGTTGGTGACCAGCGGCGGGAGGGCGAGGCGGCGTCCGATCTCGAGGAGGTC 60
Query 40828 GTCGCGGACGCGCCGCTCGATCTCCAGGCCGTGGTCCATGATCTCCAGGAAGTACCGGTC 40887
||| ||||| ||| |||||| ||||||||||||||||| ||| |||||||| |||
Sbjct 61 GTCCCGGACCCGCTTCTCGATGGACAGGCCGTGGTCCATGAGCTCGAGGAAGTAGTTGTC 120
Query 40888 ACGACCGAACACCTCCAGGTACCGGCCAGCCTCCGCAACGGCCTGGTCGTACTGCCCGAG 40947
|| ||| | | ||| | | | || || | | |||| || | |||| |||||
Sbjct 121 GCGGCCGTAGATGTCCTGCCATTTCGCCGCGGCCTCGAGCGCCTCGTTGAACTGGCCGAG 180
Query 40948 GTTGAGCCGGGTCATGATCGCACCGCCAGGGCAGCCCGTGGTGACGATCAGGCCCTCGTT 41007
||||||||| | | | ||| |||||||| |||||| |||| ||| |||
Sbjct 181 CCGCAGCCGGGTCTGCACCTCGCCGGAGGGGCAGCCGGTGGTGGCGATGCTGCCGTCGGC 240
Query 41008 GTGCTCGGCG 41017
||||||||||
Sbjct 241 GTGCTCGGCG 250
>seq963
Length=26998
Score = 87.8 bits (96), Expect = 6e-13
Identities = 81/103 (79%), Gaps = 0/103 (0%)
Strand=Plus/Plus
Query 14516 GTCCGCGCTGGGCAACCTCGGGTCCACCCTGATGGACGCGGGCAAGAAGCTGATCCAGGG 14575
||||||||| | ||| |||| || ||| | ||| |||||||| ||||| |||||
Sbjct 16394 GTCCGCGCTTGCGAACATCGGCAGCATCCTCGTCGACTCGGGCAAGGCACTGATTCAGGG 16453
Query 14576 CTTCATCAACGGCATCAAGAACATGTTCGGCTCGGTGAAGGAC 14618
||||||||||||||||||| ||||||||| ||||| ||||
Sbjct 16454 CTTCATCAACGGCATCAAGGCGATGTTCGGCAAGGTGACGGAC 16496
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 160318577997270
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |