Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20nasuta_20[genbank_20GCA_5F002222885.1_202017-07-20] 46,105 sequences; 137,224,182 total letters Query= NC_028869.1 Length=153714 Score E Sequences producing significant alignments: (Bits) Value SEQ29447 141 9e-29 SEQ32872 136 4e-27 SEQ26880 134 1e-26 >SEQ29447 Length=7397 Score = 141 bits (156), Expect = 9e-29 Identities = 114/137 (83%), Gaps = 3/137 (2%) Strand=Plus/Minus Query 76013 ATGTACGCCAACAATGCGGTGCCGGAGTCGCTGAACTTCCCGCACGACGCCATTGGCAGT 76072 |||||||||| ||||||||| |||||||||||||||| |||||||||||| || || || Sbjct 5605 ATGTACGCCAGCAATGCGGTTCCGGAGTCGCTGAACTACCCGCACGACGCGATCGGGAGC 5546 Query 76073 GACCATGACTCGGTCGGCCTGTTCCAGCAGCGTCCGTCC---TGGGGCACGGTGGCCCAG 76129 |||||||| || |||| |||||||||||||||| | || |||||||| || || ||| Sbjct 5545 GACCATGATTCCATCGGTCTGTTCCAGCAGCGTCAGGCCGGGTGGGGCACCGTCGCACAG 5486 Query 76130 CGGATGAACCCGCGCGA 76146 || ||| | |||| ||| Sbjct 5485 CGTATGGATCCGCACGA 5469 >SEQ32872 Length=2637 Score = 136 bits (150), Expect = 4e-27 Identities = 117/145 (81%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 113797 CGGCCCGGGCCGTGGCTCCGCCGGTGGCTCGCTGGTCACCTACGTCATGGGCATCACCTC 113856 ||||||||||||||||||||||| ||| | |||||| |||||| || |||||| Sbjct 191 CGGCCCGGGCCGTGGCTCCGCCGCCGGCGCCCTGGTCGCCTACGCACTGACGATCACCAA 250 Query 113857 GATCGACCCGATCAAGTACGACCTGATGTTCGAGCGCTTCATCAACCCGGACCGCCCCGA 113916 |||||||| ||| || ||| |||||||||||||| ||| |||||||||| |||||| Sbjct 251 CATCGACCCCATCGAGCACGGGCTGATGTTCGAGCGATTCCTCAACCCGGAACGCCCCTC 310 Query 113917 CTTCCCCGACATCGACGTCGACTTC 113941 | |||||| |||||| |||||||| Sbjct 311 CGCCCCCGATATCGACATCGACTTC 335 >SEQ26880 Length=5820 Score = 134 bits (148), Expect = 1e-26 Identities = 238/347 (69%), Gaps = 24/347 (7%) Strand=Plus/Minus Query 142017 ATCAGCGAGAAGGGCATTGTCATCGCGCTCGCCGTCGCCCTGGTCGAGACCAACCTCAAG 142076 |||||||| |||||||| ||||| |||||| ||| ||||| ||| | | | ||| Sbjct 1571 ATCAGCGACCAGGGCATTAAAATCGCCCTCGCCACCGCACTGGTGGAGTCAGGCATGAAG 1512 Query 142077 ATGTACGCCAACCGGTCGGACCCGGAGAGCCTCAACTTCCCGCACGACGCGGTCGGCAGC 142136 ||||||||||||| | ||| || ||| | | |||||||| ||||| ||||||||| || Sbjct 1511 ATGTACGCCAACCCGGCGGTGCCTGAGTCCATGAACTTCCCCCACGATGCGGTCGGCGGC 1452 Query 142137 GACGCCAACAGCGTCGGCGTCTTCCAGCAGCGCG---CTCCCTGGTGGGGCACGGTCGCC 142193 ||||| || |||||| | ||||||||||||| | | ||||||||| ||| Sbjct 1451 GACGCGGACTCGGTCGGCCTTTTCCAGCAGCGCGACAATGGCGCGTGGGGCACCATCGAA 1392 Query 142194 GATCGCATGGACGTCGCGCGCAGCGCGGCGATGTTCTACAACAGCCTGTATCGCCAGCGC 142253 || ||||||||| | ||| ||| | ||||||||| || || | Sbjct 1391 GACCGCATGGACCCTGAGCGGTCCGCCGGAATGTTCTACGAC-----GT----------C 1347 Query 142254 GTCGGCGGCGCCGACTACAACACCGATCGGGTCTCTCCCGGCACCTGGGGCCAGATGGTC 142313 ||| || ||| ||||||||||||| | | | || ||| || | ||| || Sbjct 1346 CTCGACGACGCGGACTACAACACCG---GCGAC---CCGGGCGCCCACGCGCAGCGCGTG 1293 Query 142314 CAGCAGTCCGCCTTTCCGGATCGCTACGACAAACGCATGGCCGAGGC 142360 |||| ||| || ||||| || |||||| ||| |||| |||||| Sbjct 1292 CAGCGGTCAGCATTTCCCGACCGCTACAACACGAAGATGGGCGAGGC 1246 Score = 89.7 bits (98), Expect = 5e-13 Identities = 75/92 (82%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 76013 ATGTACGCCAACAATGCGGTGCCGGAGTCGCTGAACTTCCCGCACGACGCCATTGGCAGT 76072 |||||||||||| |||||||| ||||| |||||||||| ||||| || | ||| | Sbjct 1511 ATGTACGCCAACCCGGCGGTGCCTGAGTCCATGAACTTCCCCCACGATGCGGTCGGCGGC 1452 Query 76073 GACCATGACTCGGTCGGCCTGTTCCAGCAGCG 76104 ||| |||||||||||||| ||||||||||| Sbjct 1451 GACGCGGACTCGGTCGGCCTTTTCCAGCAGCG 1420 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 491473394409200