Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20nasuta_20[genbank_20GCA_5F002222885.1_202017-07-20] 46,105 sequences; 137,224,182 total letters Query= NC_028876.1 Length=109800 Score E Sequences producing significant alignments: (Bits) Value SEQ36884 223 2e-53 >SEQ36884 Length=2041 Score = 223 bits (246), Expect = 2e-53 Identities = 265/357 (74%), Gaps = 3/357 (1%) Strand=Plus/Plus Query 96503 ACCGCCGCCTCAATCTCTCCGTCGGATACGAAAGCGCCCTGTATCCGGATGGCACCCCGC 96562 ||| |||||| | ||| |||||| ||||| |||||||| | || | | | Sbjct 358 ACCACCGCCTGGACCTCCTCGTCGGTGACGAAGGCGCCCTGGAGGCGCTTCGGCTTGTTC 417 Query 96563 GCCCCCACGGGCAGGAATAACCCGTCACCCATTCCCATGAGCTGCTCGGCTCCGCCCTCG 96622 |||||| || | ||| | ||||| ||||| || ||||||| |||||| ||||||| | Sbjct 418 GCCCCCTGCGGGATGAACAGGCCGTCGCCCATACCGATGAGCTTCTCGGCGCCGCCCTGG 477 Query 96623 TCCAGGATCACCCGGCTATCGGTGAGTGATGCTGTGGCGAACGAGAGCCTAGACGGCACG 96682 || ||||| || ||| || || || || | || ||||||| |||| ||||||||| Sbjct 478 TCGAGGATGACGCGGGAGTCCGTCAGCGAGGACGTCGCGAACGCCAGCCGGGACGGCACG 537 Query 96683 TTGGATTTGATAAGGCCTGTGACTACATCCACGGAGGGCCGCTGCGTCGCCAGGACGAGA 96742 |||| ||||| || || ||||| || |||||||| || |||||||||||||| || || Sbjct 538 TTGGTCTTGATCAGACCGGTGACGACGTCCACGGACGGACGCTGCGTCGCCAGCACCAGG 597 Query 96743 TGAATACCGGCTGCGCGCGCCTTCTGGGCGATGCGGACAATGTTGGCCTCGACTTCTTTC 96802 || ||||| || ||||| |||||||||| ||| ||||| ||| | |||||| || | | Sbjct 598 TGGATACCCGCGGCGCGGGCCTTCTGGGTGATCCGGACGATGGCGTCCTCGA--TC-TCC 654 Query 96803 TTGTAGCCGCCCATCATGAGGTCTGCGAGTTCGTCGACCACTACCACGATGTAGGGG 96859 || | || |||||||||||| ||||| |||||||| || ||||||||| ||| Sbjct 655 TTCGGGGCGGTCATCATGAGGTCGGCGAGCTCGTCGACGACGCACACGATGTACGGG 711 Score = 165 bits (182), Expect = 6e-36 Identities = 202/276 (73%), Gaps = 0/276 (0%) Strand=Plus/Plus Query 96877 GTGGCGCACGCCGGCTTCCTGCATCTGCCGGTACCGGTCATCCATCTCCACGGTGAGCCA 96936 ||||||||||| ||| || ||| | | |||||| | ||||||||| || ||||| Sbjct 789 GTGGCGCACGCGGGCGGACTTCATGTCCATGTACCGCTGCTCCATCTCCTCGACCAGCCA 848 Query 96937 CCGCAGCGTCTTAACCGCCTCGTCGGGCTCGGTGACCACCGGCTGCAAAAGGTGGGGGAT 96996 ||||| | | |||||| | |||| |||| | |||| | ||||| ||||| Sbjct 849 GGTCAGCGCCGTCGCCGCCTTCTTCGGCTGCGTGATGATCGGCGTGATGAGGTGCGGGAT 908 Query 96997 ACCGTTGTACGGGGTGAGTTCCACCATCTTCGGGTCGATCATGATGAGTTTGACCCGATC 97056 || | ||| ||||| || ||||||||||||||||||| | |||||| |||| || Sbjct 909 CCCCTCGTAGGGGGTCAGCTCCACCATCTTCGGGTCGACGAGGATGAGGCGGACCTCCTC 968 Query 97057 AGGATTGGCTCGGTAGAGCATGGAAACCAGCATCGAGTTGATGAAGCTGGACTTACCTGA 97116 || | || ||| ||| ||||| || |||| |||||||| |||| |||||||| || Sbjct 969 CGGGGTCGCCCGGGTGAGGATGGACACGAGCAACGAGTTGACGAAGGCCGACTTACCGGA 1028 Query 97117 TCCGGTGGCGCCAGCCACCAGCAGGTGCGGCATTTT 97152 ||||||| ||| || ||||||||||||||||| || Sbjct 1029 GCCGGTGGAGCCGGCGACCAGCAGGTGCGGCATCTT 1064 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 351037839294705