Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20nasuta_20[genbank_20GCA_5F002222885.1_202017-07-20] 46,105 sequences; 137,224,182 total letters Query= NC_028892.1 Length=49949 Score E Sequences producing significant alignments: (Bits) Value SEQ32872 643 4e-180 SEQ43235 161 3e-35 >SEQ32872 Length=2637 Score = 643 bits (712), Expect = 4e-180 Identities = 1214/1755 (69%), Gaps = 43/1755 (2%) Strand=Plus/Minus Query 37593 GCCCTTGCG--GGTGGCACCCGTGGAGTCGAACGCACCGGCCTTGATCAAGGACTCGACG 37650 ||||||||| |||||| | ||||||||| || ||||||||||||| || ||| | Sbjct 1826 GCCCTTGCGCGGGTGGC--CGAGGGAGTCGAAGGCGCCGGCCTTGATCAGTGAGTCGGTG 1769 Query 37651 GCTCGCTTGCT-CACGTTCGCCTGAGTCG--CCGACCGAAGGAAGTCCGGCAGGGAGGTG 37707 | |||||| | || | || | |||| | ||| || |||| | | | ||| Sbjct 1768 ACGCGCTTGTTGCAGG--CGGTGGCGTCGATCTTGTCGA-GGTAGTCGGAGAAGTCCGTG 1712 Query 37708 AACTTCCCCCAGGCTTCCCGCAGTTGGACGATCTCATCGACCATGCCCTCGCCCACGTTC 37767 ||||||||| | || ||| || |||| ||||| | | ||||||| ||||| Sbjct 1711 AACTTCCCCTTCTCCTCGCGCGCCGCGATGATCGAGTCGACGACGTCCTCGCCGACGTTG 1652 Query 37768 TTCACGGCGGTCAGCCCGAAGCGGATCTCCCGCTCCCCGTTCGGGGTG-AAGGAGGAGTT 37826 || ||| || ||||||||||| ||| || ||| ||| || |||| | || Sbjct 1651 CGGACCGCGCCGAGGCCGAAGCGGATGTCC---TCGCCGA-CGGACTGGAAGGTGTAGGC 1596 Query 37827 CGAGACCGACACGTC-GGGCGGCAGGACCCGAAGGCCCATGCGCCTGCACTCGCCGAGGT 37885 || | ||||| |||| | || || || | || | | | | ||| ||| |||||| Sbjct 1595 GGACTCGTTGACGTCCGGGCTG-AGCACGCGCACCCCGAGGTGGCGGCAGTCGGCGAGGT 1537 Query 37886 ACGTGGCCATCTTGTTCTTGTCGTCGCCCACCGAGGTGAGCACGGCCGCCATGTACTCGG 37945 | | || ||||| ||| | ||| ||||||||||||||| |||||||||||||||| Sbjct 1536 AGATCGCGGACTTGTCCTTCTTGTCCGCCACCGAGGTGAGCAGCGCCGCCATGTACTCGG 1477 Query 37946 CCGGGTAGTGCGTCTTCAGGTACGCCGTGCGGTAGGCGATGAGTCCGTACGCCGCAGAGT 38005 | | ||| ||| ||| ||||| || || | | || | || ||||| | || | || Sbjct 1476 CGGTGTAATGCTCCTTGAGGTAGGCGGTCCAGAAGCTCACCAGACCGTAGCCGGCGGCGT 1417 Query 38006 GCGCCTTGTTGAAGGCGTACCCGGCGAAGGGTACGAGCACGTCCCACACCGCCCGGATGG 38065 ||| |||||||| ||||| |||||||| || | | | |||||||| ||| ||| || Sbjct 1416 GCGACTTGTTGAGCGCGTAGCCGGCGAACGGCAGCACCGTGTCCCACAGGGCCTGGACGG 1357 Query 38066 CAGCCTCCGAGTAGCCTCGCTCG-CTCGCCCCCTTCTG-GAAGTTCACGAACTCCTTGGC 38123 | | || |||||||| | | | || || | | ||| || ||||||||||||| Sbjct 1356 CCTCGTCGGAGTAGCC--GTTGGACTTCATGCCGGCGGCGAACTTGTCGAACTCCTTGGC 1299 Query 38124 CAGCACCTCGGGCTTCTTCTTGCCCATGGCGCGACGGAGGAGGTCGGCCTGACCGAGGGT 38183 |||||||||||||||||||||||||||||| |||| |||||||| |||| ||| Sbjct 1298 CAGCACCTCGGGCTTCTTCTTGCCCATGGCCTTGCGGAACCCGTCGGCCTCACCGGCGGT 1239 Query 38184 GTACCCGGCCAGGATCTGCGCCGCCTTCTGCACCTGCTCCTGGTAGATGATGAGCCCGAA 38243 ||| || | |||||| | || | |||||||||||| | |||||| ||| | Sbjct 1238 GTAGTTCGCGACCTTCTGCGAGATCCTCATGATCTGCTCCTGGTACACGATGAGACCGTA 1179 Query 38244 GGTCGGGTCCAGGATCTCGGCCAGCGGCTCCTCCACCTCGGGGTGGATCGGCGTGATCTC 38303 |||| |||||||| || | | ||| | | ||| |||||||||||| |||| Sbjct 1178 GGTCTCCTCCAGGATGTCCTTGATGGACTCGGCGAGCTCCGGGTGGATCGGCTCGATCGG 1119 Query 38304 CTGCTGACCGTTCTTGCGGAGGGCGTAGTTCGTGTGCGAGCCCATGCCCATCGGACCCGG 38363 || | |||||||||||| ||||||| | ||||| || | |||||||| ||||| Sbjct 1118 CTTGCGGCCGTTCTTGCGGTCCGCGTAGTCCCAGTGCGCCCCGACACCCATCGGGCCCGG 1059 Query 38364 ACGGTACAGCGCGACGACGGCCGAGATGTCCTCGAA-CTGGTCCGGCTTCAGCAGGCGAA 38422 ||||||||||| | | ||| ||||| | ||| | ||| ||||||| | | Sbjct 1058 CCGGTACAGCGCCAGGGACGCCACAATGTCGTTGAAGCCGGTG-GGCTTCATGCGCTTGA 1000 Query 38423 GCAGGGAGCGCATCGCGCCGCCGTCGAGCTGGAAGACCGAGAGGGTGTCGCCCCTGGCCA 38482 |||| |||| ||||| ||| |||||||||| ||| ||||| || | ||||| Sbjct 999 GCAGTTCCTGCATGCCGCCGGAGTCCAGCTGGAAGATGCCGAGCGTGTCACCGCGGGCCA 940 Query 38483 GCAGCTCGTAGGTTGCCGGGTCGTCCAGCGGGATGTTCTCGATGTCGACGTGCTCACCAC 38542 |||| || |||| ||||||||||| || | |||||| | ||||| || ||| || | Sbjct 939 GCAGTTCATAGGACGCCGGGTCGTCGGTCGACAGGTTCTCCAGGTCGAAGTCCTCGCCCC 880 Query 38543 GGTTGCGGCGGATGTTCTCGACCGCGTCGCCCATGATCGTGAGGTTCCGGAGCCCGAGGA 38602 |||| ||||||||| | |||| | |||| |||||||| || ||||| |||| Sbjct 879 GGTTCTTCTTGATGTTCTCCAGGCAGTCGGCGATGACGGTGAGGTTGCGCAGCCCCAGGA 820 Query 38603 AGTCCATCTTCAGCAGGCCCAGGGCCTCGCAGCTCGGGTAGT-CGAACTGCGTGATCGTC 38661 ||||||||||||||||||| | |||||| ||| ||||||| | | | | |||||| Sbjct 819 AGTCCATCTTCAGCAGGCCGATGGCCTCACAGGCCGGGTAGGGCCAGCCG-GTGATCAGG 761 Query 38662 ACGCCGTCCGCAGGCCGCACCCACGTAGGGATGTGGTCGACCAGCGGCTCGTCAGACATG 38721 ||||||| || ||| |||| | ||||||||||||| ||||||| | | |||| Sbjct 760 GCGCCGTCGTTGGGGCGCTTCCACATCGGGATGTGGTCGAGCAGCGGCACCGAGGCCATG 701 Query 38722 ATCACACCGGCTGCGTGCACGCCCATCTGCCGGACGAGTCCTTCGAGGCCACGCGCGAGG 38781 ||||| || ||||| |||| ||| ||||| | || || ||||| | ||| | Sbjct 700 ATCACTGCGCAGGCGTGGCCGCCGGCCTGGCGGACCACGCCCTCCAGGCCGAGGGCGTCG 641 Query 38782 TCGATGACCTCCTTCGCGTCCTTGTCGTTCTCGTACAGCGCCCGGATCTCGCCCGCCTCG 38841 ||| || |||||| | || ||| ||||| || | |||||||| | ||| || Sbjct 640 TCGTAGATCTCCTTGACCACCGGATCGGTCTCGATGAGGGTGCGGATCTCCGCGGCCGCG 581 Query 38842 TCGTAGCGCGGGTGCTCCGGGTTGGTGATGCCCTCCAGGGGCATCGAC-GCGCCCATCAC 38900 ||||||||||||||||||| | ||||||| ||| || || | |||| | Sbjct 580 CCGTAGCGCGGGTGCTCCGGATCCATGATGCCGGACAGCGGGATGTCCTTCGCCGCCTGC 521 Query 38901 GTCGGCCGGGTA-CGCCTTGGTCAGCTTCTCGCCGACCTGGAA---GGGCT---TGTCCA 38953 | ||| ||| | |||||||| | | ||| ||| |||||| ||||| || Sbjct 520 GCCGG--GGGCAGGGCCTTGGTGATCCGGTCGGCGATCTGGAAGCCGGGCTGGCCGTGGT 463 Query 38954 GCACGCGGGCCGCGTCCTTCATCGCGTTGCGCGCCTTGATCCGT-CCGTACGTCGCGATC 39012 | ||||||| |||||||| ||||| | | ||| | |||| ||| | || || | Sbjct 462 GGGCGCGGGCGGCGTCCTTGATCGCCTGCTTGGTCTTCA-CCGTGCCGAAGGTGATGACC 404 Query 39013 TGTGCGACCTTGTCACTGCCGTACTTCTCGGTGACGTACCGGATCACGTCGCCACGGCGA 39072 || ||||||||||| ||| | |||| || | |||| ||||||| ||| | || Sbjct 403 TGGGCGACCTTGTCCTCGCCCCAGTTCTGGGCGGCGTAGCGGATCATCTCGGAA---CGC 347 Query 39073 CGGTCAT---CGAAGTCGATGTCCACGTCGGGCATGGAGACACGCTCAGGGTTCAGGAAC 39129 ||||||| ||||||||||||| | ||||| |||| || || ||||| ||||| Sbjct 346 CGGTCATCGGCGAAGTCGATGTCGATATCGGGGGCGGAGGGGCGTTCCGGGTTGAGGAAT 287 Query 39130 CGCTCGAAGATGAGCCCGTGAGGGATGGGGTCCAGGTCGGTGATCCCGAGGGCGTACGCG 39189 |||||||| || |||||||| ||||||||| | || ||||||| || ||||| ||| Sbjct 286 CGCTCGAACATCAGCCCGTGCTCGATGGGGTCGATGTTGGTGATCGTCAGTGCGTAGGCG 227 Query 39190 GCCAGCGAGCCAGCCGCAGAGCCGCGCCCAGGGCCGACCCACACGCCGTTCTCCTTCGCC 39249 |||| | ||| || || ||||| || || |||||||| | | |||| | || Sbjct 226 ACCAGGGCGCCGGCGGCGGAGCCACGGCCCGGGCCGACGGAGATGCCGATGGAGCGGGCG 167 Query 39250 CAGCCGATGAAGTCGGCGACGACGAGGAAGTACGACGGGAACCCCATCTGGTTGATCATG 39309 ||||| ||||||||||||||||||||| |||||| | ||| || || ||| | Sbjct 166 TGCTTGATGAGGTCGGCGACGACGAGGAAGTAGGACGGGTAGCCCTTCATGTCGATGACA 107 Query 39310 TCGATCTCGTACTCG 39324 ||||||||||||| Sbjct 106 CTGATCTCGTACTCG 92 >SEQ43235 Length=559 Score = 161 bits (178), Expect = 3e-35 Identities = 182/244 (75%), Gaps = 0/244 (0%) Strand=Plus/Plus Query 39680 AGTCGTTGGTGACCACCGGGGTGAGACCGAGGCGCTGACCGAGGCGGTAGAGGTCGTCGC 39739 ||||||||||||||| ||| | ||| ||||||| | |||| | ||||||||| | Sbjct 6 AGTCGTTGGTGACCAGCGGCGGGAGGGCGAGGCGGCGTCCGATCTCGAGGAGGTCGTCCC 65 Query 39740 GGACGCGCCGCTCGATCTCCAGGCCGTGGTCCATGATCTCCAGGAAGAAGTTGTCCTTCC 39799 |||| ||| |||||| ||||||||||||||||| ||| |||||| ||||||| | Sbjct 66 GGACCCGCTTCTCGATGGACAGGCCGTGGTCCATGAGCTCGAGGAAGTAGTTGTCGCGGC 125 Query 39800 CGAAGATCTCCCGCCACTTCGCGGCCTCGGCGACGGCCTCCTCGTACTGGCCGAGGTTGA 39859 || |||| ||| |||| ||||| || | ||| ||||| | | |||||||||| | Sbjct 126 CGTAGATGTCCTGCCATTTCGCCGCGGCCTCGAGCGCCTCGTTGAACTGGCCGAGCCGCA 185 Query 39860 GCCGGGTCATCACTGCGCCACCGGGGCATCCCGTGGTGCCGATCAGGCCCTCTGCGTGCT 39919 |||||||| ||| |||| |||||| || |||||| |||| ||| || ||||||| Sbjct 186 GCCGGGTCTGCACCTCGCCGGAGGGGCAGCCGGTGGTGGCGATGCTGCCGTCGGCGTGCT 245 Query 39920 CCGC 39923 | || Sbjct 246 CGGC 249 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 159627756427110