Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20nasuta_20[genbank_20GCA_5F002222885.1_202017-07-20] 46,105 sequences; 137,224,182 total letters Query= NC_028906.1 Length=75933 Score E Sequences producing significant alignments: (Bits) Value SEQ13951 426 8e-115 SEQ22413 147 1e-30 SEQ32968 145 4e-30 SEQ43844 100 1e-16 >SEQ13951 Length=2429 Score = 426 bits (472), Expect = 8e-115 Identities = 588/817 (72%), Gaps = 9/817 (1%) Strand=Plus/Minus Query 66481 TATCGCTCTGGACGGCGCCCTGGGCATCGGGGGGTACCCGAGGGGCCGGGTGGTGGAAAT 66540 |||||| | ||| ||| || |||||||| |||| |||| ||||||| || || || || Sbjct 1968 TATCGCGATCAACGTCGCGCTCGGCATCGGCGGGTTCCCGCGGGGCCGTGTCGTCGAGAT 1909 Query 66541 CTACGGCCCAGAATCTTCAGGGAAGTCAACTCTGTGTCTCCACGCGGTGGCCAATGCGCA 66600 |||||| || || || || || ||| | || || || ||||| || ||| | ||||| Sbjct 1908 CTACGGTCCGGAGTCCTCGGGTAAGACCACGGTGGCGCTGCACGCTGTCGCCGAGGCGCA 1849 Query 66601 GAAGGCCGGTGGCAACGCCGCCTACATCGACGCTGAGCACTCCCTGGACCCTGAGTACGC 66660 ||||| ||| |||| |||||||| ||||||||| |||||| |||| ||||| |||||||| Sbjct 1848 GAAGGGCGGCGGCATCGCCGCCTTCATCGACGCGGAGCACGCCCTCGACCCCGAGTACGC 1789 Query 66661 CAAGGCGCTCGGTGTGGACCTCGACAACCTCGTGGTGGTTCAGCCCGATACCGGCGAGCA 66720 ||| ||||| |||||| ||||||||| | || ||||| || ||||||||||| Sbjct 1788 GAAGAACCTCGGGGTGGACACGGACAACCTCCTCGTCTCCCAGCCGGACACCGGCGAGCA 1729 Query 66721 GGCCCTGGAGATCGTTGACCTCCTCGTCAAGTCTGGCGAGCTGTCCATCGTCGTCGTTGA 66780 ||| || ||||||| ||| | |||||| ||| |||| | | |||| |||| || || Sbjct 1728 GGCACTCGAGATCGCCGACATGCTCGTCCGGTCGGGCGCGGTCGACATCATCGTGGTGGA 1669 Query 66781 CTCCGTGGCGGCCCTGGTGCCGCGCGCCGAGCTCGAAGGCGACATCGGGGACAGTCACGT 66840 ||| || ||||| ||| ||| || ||| |||| || || || || ||||||||||| Sbjct 1668 CTCGGTCGCGGCGCTGACCCCGAAGGCGGAGATCGAGGGGGAGATGGGCGACAGTCACGT 1609 Query 66841 CGGCCTGCACGCGCGCCTCATGTCACAGGCCATGCGCAAGCTCACTGGCACCATC-TCCA 66899 ||| ||||| || ||||||||| ||||| |||||||| | || || | || ||| Sbjct 1608 CGGTCTGCAGGCCCGCCTCATGAGCCAGGCACTGCGCAAGATGACCGGTGCACTCAGCCA 1549 Query 66900 GCACCAACACGCTGACGCTCTGGGTCAACCAGTTGCGCGAGAAGATCGGCAACGTGGGCT 66959 | ||| ||| | ||| |||||||| | |||||||||||||| |||| | Sbjct 1548 G-ACCGGCACCACCGCCATCTTCATCAACCAGCTCCGCGAGAAGATCGG---CGTGATGT 1493 Query 66960 ACGGCCCGAATGAGACCACCACGGGCGGAAAGGCTTTGAGGTTCTACGCCTCAGTCCGTA 67019 ||| || |||||||| |||||||| ||||| ||| ||||||||| || ||||| Sbjct 1492 TCGGTTCGCCGGAGACCACGACGGGCGGCAAGGCACTGAAGTTCTACGCTTCGGTCCGCT 1433 Query 67020 TGGATGTCCGTCGCATCGCCACCGAGAAGGAAGGCGATGAGGCTGTCGGCAACCGCACCC 67079 || |||| || || || ||||| || | || || ||||| ||||| ||| Sbjct 1432 GCGACATCCGGCGGGTCCAGACGCTCAAGGACGGGCAGGATGCGGTCGGTAACCGGACCA 1373 Query 67080 GGGTGAAGGTCGTCAAGAACAAGCTGGCCCCGCCGCACCGCAATGCCGAGTTCTCCGTCG 67139 | ||||| |||||||||||||| | | |||||| | | ||||| ||| ||| Sbjct 1372 AGATGAAGATCGTCAAGAACAAGGTCTCGCCGCCGTTCAAGATCGCCGAATTCGATGTCC 1313 Query 67140 TGTACGGGGAGGGCATCTCGCGTGA--GGTCGAACTCCTCGACCTGGCCGTGTCGCAGGG 67197 | ||||| |||||||||| || || |||||| || ||||||||| |||| | || Sbjct 1312 TCTACGGACAGGGCATCTCCCGGGAAGGGTCGA--TCATCGACCTGGGCGTGGACAACGG 1255 Query 67198 CCTGGTGAAGAAGTCGGGCGCCTGGTTCAAGTACGGGGACAAGAACGTCGCCCAGGGCAA 67257 ||| | |||||||| ||| |||||| || ||| || | | | | | |||||||| Sbjct 1254 ACTGATCAAGAAGTCCGGCTCCTGGTACACCTACAAGGGCGACCAGCTGGGGCAGGGCAA 1195 Query 67258 GCCCAAGGCCGTCCAGTGGCTCAAGGCCAACCCGGAC 67294 | |||||| | ||| ||||||| ||||||||| Sbjct 1194 GGAGAAGGCCCGCGAGTTCCTCAAGGAGAACCCGGAC 1158 >SEQ22413 Length=7522 Score = 147 bits (162), Expect = 1e-30 Identities = 220/311 (71%), Gaps = 11/311 (4%) Strand=Plus/Minus Query 60218 TCGTCGGCACGCTGACCGCCGACCCCGAGCTGCGGTTCACCCAAGGTGGGCAGGCCGTCG 60277 ||||||||| || || ||||||||| |||| | ||||| | || || ||| Sbjct 3674 TCGTCGGCAACCTCGTGGCGGACCCCGAGTTGCGCTACACCCCCAGCGGTGCCGCGGTCA 3615 Query 60278 CCAACTTCACCGTCGTGTCCAACGAACGCCGCCGCGACGCCCAGGGCAAC---TGGGTCG 60334 |||||||| || | |||| || ||| |||| | ||| |||| ||||||| Sbjct 3614 CCAACTTCCGGGTGGCTTCCACACCGCGACGCTTCGACTCACAGACCAACCAGTGGGTCG 3555 Query 60335 ACGGCGACGCCACATTCCTCCGCTGCACCATCTGGCGCGACGCCGCCGAGAACGTGGCGG 60394 ||| ||| ||| ||||| ||||| |||||||||| ||||||||||||||| || Sbjct 3554 ACGACGAGGCCTTGTTCCTGACCTGCAACATCTGGCGCACCGCCGCCGAGAACGTCGCCA 3495 Query 60395 AAAGCCTCCAGAAAGGCCAGCGCGTCATCGT----GCATGGCTACCTCAAGCAGCGCTCC 60450 | ||||| || || ||| | || || ||||| | || | | |||| || ||| Sbjct 3494 ACAGCCTGCACAAGGGCGACCGGGTGATCGTCACCGGCCGGTTGCGTCAA----CGGTCC 3439 Query 60451 TTCGAGACCAAGGAGGGCGACAAGCGCACCGTCATCGAGGTGGAGGTAGACGAGATCGGC 60510 | ||||||| ||||| || ||||||||||| ||||||||||| |||||| ||||| Sbjct 3438 TACGAGACCCGCGAGGGTGAGAAGCGCACCGTGTTCGAGGTGGAGACCGACGAGGTCGGC 3379 Query 60511 CCGTCGCTGCG 60521 || |||||||| Sbjct 3378 CCCTCGCTGCG 3368 >SEQ32968 Length=2597 Score = 145 bits (160), Expect = 4e-30 Identities = 204/283 (72%), Gaps = 9/283 (3%) Strand=Plus/Minus Query 60270 GGCCGTCGCCAACTTCACCGTCGTGTCCAACGAACGCCGCCG---CGACGCCCAGGGCAA 60326 ||| ||||| |||||| ||||| ||| |||| | ||| || |||| | || || Sbjct 2120 GGCGGTCGCGAACTTCCGCGTCGCGTC-AACG--CCCCGTCGGTTCGACTCGAAGTCGAA 2064 Query 60327 C---TGGGTCGACGGCGACGCCACATTCCTCCGCTGCACCATCTGGCGCGACGCCGCCGA 60383 | ||||||||||| || || |||||| |||||| | |||||||| | |||||||| Sbjct 2063 CCAGTGGGTCGACGGGGAGGCACTGTTCCTCAGCTGCAACGTCTGGCGCCAGGCCGCCGA 2004 Query 60384 GAACGTGGCGGAAAGCCTCCAGAAAGGCCAGCGCGTCATCGTGCATGGCTACCTCAAGCA 60443 |||||| ||| | ||| || || || | ||||| ||||| ||| || || Sbjct 2003 GAACGTCGCGAACTCCCTGCACAAGGGGGACCGCGTGATCGTCTCCGGCCGGCTGCGCCA 1944 Query 60444 GCGCTCCTTCGAGACCAAGGAGGGCGACAAGCGCACCGTCATCGAGGTGGAGGTAGACGA 60503 ||| |||| ||| ||| ||||| || ||||||||||| ||||||||||||| ||||| Sbjct 1943 GCGGTCCTACGAAACCCGTGAGGGTGAGAAGCGCACCGTGTTCGAGGTGGAGGTCGACGA 1884 Query 60504 GATCGGCCCGTCGCTGCGGTGGGCAACAGCTCGTGTGTCCAAG 60546 | |||||||||| || |||| || || || | || ||||| Sbjct 1883 GGTCGGCCCGTCTCTCCGGTACGCCACCGCACAGGTCGCCAAG 1841 >SEQ43844 Length=619 Score = 100 bits (110), Expect = 1e-16 Identities = 127/175 (73%), Gaps = 0/175 (0%) Strand=Plus/Plus Query 60349 TTCCTCCGCTGCACCATCTGGCGCGACGCCGCCGAGAACGTGGCGGAAAGCCTCCAGAAA 60408 |||||| || || | | |||||| | || || |||||||||||| | ||||| || || Sbjct 151 TTCCTCACCTTCAACCTGTGGCGCCAGGCAGCGGAGAACGTGGCGAACAGCCTGCACAAG 210 Query 60409 GGCCAGCGCGTCATCGTGCATGGCTACCTCAAGCAGCGCTCCTTCGAGACCAAGGAGGGC 60468 || | || || ||||| ||| | ||| ||||| |||| |||| | ||| ||| Sbjct 211 GGTGACCGGGTGATCGTCGTCGGCAATCTCCGCCAGCGGTCCTACGAGTCGAAGACCGGC 270 Query 60469 GACAAGCGCACCGTCATCGAGGTGGAGGTAGACGAGATCGGCCCGTCGCTGCGGT 60523 |||| ||||||||| |||| | |||| |||||| ||||||| || || |||| Sbjct 271 GACACGCGCACCGTGTACGAGATCGAGGCGGACGAGGTCGGCCCTTCCCTCCGGT 325 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 242724335378070