Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20nasuta_20[genbank_20GCA_5F002222885.1_202017-07-20] 46,105 sequences; 137,224,182 total letters Query= NC_028946.1 Length=59652 Score E Sequences producing significant alignments: (Bits) Value seq6253 197 5e-46 >seq6253 Length=4700 Score = 197 bits (218), Expect = 5e-46 Identities = 376/548 (69%), Gaps = 8/548 (1%) Strand=Plus/Minus Query 42165 CTGACTCTCACCGATCTGTTCTGCGGCGCTGGCGGTTCGAGCACCGGCGCGATCGAGATC 42224 || || ||| |||| | |||||||| || ||||| || |||||| || |||| || Sbjct 4473 CTCACCCTCTCCGACTTCTTCTGCGGTGCCGGCGGATCCTCCACCGGAGCACTCGACGTC 4414 Query 42225 CCCGGCGTGGAGGTTCGCGTCGCGTCGAACCACTGGGACCTGGCCGTCGAGACGCACAAC 42284 |||||||| || || |||| ||| | | ||||||||| || |||||||| || ||| | Sbjct 4413 CCCGGCGTCGACGTCCGCGCCGCCGCCACCCACTGGGATCTCGCCGTCGAAACCCACCAG 4354 Query 42285 ACGAACCACCCCGACGCCGACCATGTGTGCGCCGATCTGTCGCAGATCGACCCGCGCCGG 42344 ||||||| |||||||| || | |||||||| | ||| ||| ||| || | Sbjct 4353 CGCCACCACCCGGACGCCGAACACATCTGCGCCGACATCAGCCAGTACGAGCCGAGCTTG 4294 Query 42345 TTCCCGCGCACCGACATCCTCTGGGCGAGCCCGGAGTGCACGAATCACTCGGTGGCCAAG 42404 ||||| | ||| ||| || |||| ||| ||||| | ||| ||||||| || Sbjct 4293 TTCCCCCACACGGACCTCGCCTGGTTCTCCCCCTCCTGCACCAGCCACACGGTGGCGCAG 4234 Query 42405 GGCCGCAAGCGCGTCGACTCG-CAGCC--CGACCTGTTCGGCGAGGTAC---TGCCCGAC 42458 ||| || | |||| | | ||| | || | |||| || | | |||||| Sbjct 4233 GGCATGGCCCGTGCCGACCGGGCCGCCGCCTACGTCCTCGGAGAAACCCCCCTCCCCGAC 4174 Query 42459 GCGGCGGCCGAGCGGTCCCGCGCCACGATGTGGGACGTGCCCCGGTTCGCCGAGGCGCAC 42518 | ||| ||| || ||||||||||| |||||||||||| || ||| ||||| ||| Sbjct 4173 GACGCGCACGAACGATCCCGCGCCACCATGTGGGACGTGGTGCGCTTCACCGAGTACCAC 4114 Query 42519 CGCTACCAGGCCGTCATCGTCGAGAACGTCGTAGACGCGTGGCACTGGCAGCCGTTCCAG 42578 | |||| || ||||| |||||||||||| || | | ||| ||| |||| Sbjct 4113 CACTACGCCGCGGTCATTGTCGAGAACGTCACCGAGGTCACCAAGTGGGCGCCATTCCCC 4054 Query 42579 GCGTGGCTGATGGCCATGGACTCGCTGGGCTACGAGCACCACATCGTGTTCCTGAACTCG 42638 |||||| | ||||| ||||| |||| |||||| |||||| ||| || | || ||| Sbjct 4053 GCGTGGATCATGGCGATGGAAGCGCTCGGCTACAAGCACCGCATTGTCATGCTCAACAGC 3994 Query 42639 ATGCACGCGCAGGC-GTTCGGCCCGGGTGCGCCGCAGTCACGGGACCGCATGTACGTGGT 42697 |||||||| | | | || |||||| | || |||| || || ||||| | ||| || Sbjct 3993 ATGCACGC-CGGCCTGTACGGCCCCGCCGCCGCGCAATCCCGCGACCGGTTCTACTGCGT 3935 Query 42698 GTTCTGGC 42705 |||||||| Sbjct 3934 GTTCTGGC 3927 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 190660356868140