Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20nasuta_20[genbank_20GCA_5F002222885.1_202017-07-20] 46,105 sequences; 137,224,182 total letters Query= NC_028976.1 Length=50113 Score E Sequences producing significant alignments: (Bits) Value SEQ32872 654 0.0 SEQ43235 156 1e-33 >SEQ32872 Length=2637 Score = 654 bits (724), Expect = 0.0 Identities = 1215/1758 (69%), Gaps = 49/1758 (3%) Strand=Plus/Minus Query 38026 GCCCTTGCG--GGTGGCACCCGTGGAGTCGAACGCACCGGCCTTGATCAAGGACTCGACG 38083 ||||||||| |||||| | ||||||||| || ||||||||||||| || ||| | Sbjct 1826 GCCCTTGCGCGGGTGGC--CGAGGGAGTCGAAGGCGCCGGCCTTGATCAGTGAGTCGGTG 1769 Query 38084 GCTCGCTTGCT-CACGTTCGCCTGAGTCGCCGACCG----GAGGAAGTCCGGCAGGGAGG 38138 | |||||| | || | | | | || ||| | |||| |||| | | | | Sbjct 1768 ACGCGCTTGTTGCAGG-----CGGTGGCGTCGATCTTGTCGAGGTAGTCGGAGAAGTCCG 1714 Query 38139 TGAACTTCCCCCAGGCTTCCCGCAGTTGGACGATCTCCTCGACCATGCTCTCGCCCACGT 38198 ||||||||||| | || ||| || |||| ||||| | | |||||| |||| Sbjct 1713 TGAACTTCCCCTTCTCCTCGCGCGCCGCGATGATCGAGTCGACGACGTCCTCGCCGACGT 1654 Query 38199 TCTTCACGGCGGTCAGTCCGAAGCGGATCTCCCGCTCCCCGTTCGGGGTG-AAGGAGGAG 38257 | || ||| || ||||||||||| ||| || ||| ||| || |||| | || Sbjct 1653 TGCGGACCGCGCCGAGGCCGAAGCGGATGTCC---TCGCCGA-CGGACTGGAAGGTGTAG 1598 Query 38258 TTCGAGACCGACACGTC-GGGCGGCAGGACCCGAAGGCCCATGCGCCTGCACTCGCCGAG 38316 || | ||||| |||| | || || || | || | | | | ||| ||| |||| Sbjct 1597 GCGGACTCGTTGACGTCCGGGCTG-AGCACGCGCACCCCGAGGTGGCGGCAGTCGGCGAG 1539 Query 38317 GTACGTGGCCATCTTGTTCTTGTCGTCGCCCACCGAGGTGAGCACGGCCGCCATGTACTC 38376 ||| | || ||||| ||| | ||| ||||||||||||||| |||||||||||||| Sbjct 1538 GTAGATCGCGGACTTGTCCTTCTTGTCCGCCACCGAGGTGAGCAGCGCCGCCATGTACTC 1479 Query 38377 GGCCGGGTAGTGCGTCTTCAGGTACGCCGTGCGGTAGGCGATGAGTCCGTACGCCGCAGA 38436 ||| | ||| ||| ||| ||||| || || | | || | || ||||| | || | Sbjct 1478 GGCGGTGTAATGCTCCTTGAGGTAGGCGGTCCAGAAGCTCACCAGACCGTAGCCGGCGGC 1419 Query 38437 GTGCGCCTTGTTGAAGGCGTACCCGGCGAAGGGTACGAGCACGTCCCACACCGCCCGGAT 38496 ||||| |||||||| ||||| |||||||| || | | | |||||||| ||| ||| Sbjct 1418 GTGCGACTTGTTGAGCGCGTAGCCGGCGAACGGCAGCACCGTGTCCCACAGGGCCTGGAC 1359 Query 38497 GGCAGCGTCCGAGTAGCCTCGCTCG-CTTGCTCCCTTCTG-GAAGTTCACGAACTCCTTG 38554 ||| |||| |||||||| | | | ||| | || | | ||| || ||||||||||| Sbjct 1358 GGCCTCGTCGGAGTAGCC--GTTGGACTTCATGCCGGCGGCGAACTTGTCGAACTCCTTG 1301 Query 38555 GCCAGCACCTCGGGCTTCTTCTTGCCCATGGCGCGACGGAGAAGGTCGGCCTGACCGAGG 38614 |||||||||||||||||||||||||||||||| |||| |||||||| |||| | Sbjct 1300 GCCAGCACCTCGGGCTTCTTCTTGCCCATGGCCTTGCGGAACCCGTCGGCCTCACCGGCG 1241 Query 38615 GTGTACCCGGCCAGGATCTGCGCCGCCTTCTGCACCTGCTCCTGGTAGATGATGAGCCCG 38674 ||||| || | |||||| | || | |||||||||||| | |||||| ||| Sbjct 1240 GTGTAGTTCGCGACCTTCTGCGAGATCCTCATGATCTGCTCCTGGTACACGATGAGACCG 1181 Query 38675 AAGGTCGGGTCCAGGATCTCGGCCAGCGGCTCCTCCACCTCGGGGTGGATCGGCGTGATC 38734 ||||| |||||||| || | | ||| | | ||| |||||||||||| |||| Sbjct 1180 TAGGTCTCCTCCAGGATGTCCTTGATGGACTCGGCGAGCTCCGGGTGGATCGGCTCGATC 1121 Query 38735 TCCTGCTGCCCGTTCTTGCGGAGGGCGTAGTTCGTGTGCGAGCCCATGCCCATCGGACCC 38794 || | |||||||||||| ||||||| | ||||| || | |||||||| ||| Sbjct 1120 GGCTTGCGGCCGTTCTTGCGGTCCGCGTAGTCCCAGTGCGCCCCGACACCCATCGGGCCC 1061 Query 38795 GGACGGTACAGCGCCACG-ACGGCGGAGATGTCCTCGAA-CTGGTCCGGCTTCAGCAGGC 38852 || ||||||||||||| | ||| | | ||||| | ||| | ||| ||||||| | Sbjct 1060 GGCCGGTACAGCGCCAGGGACGCCACA-ATGTCGTTGAAGCCGGTG-GGCTTCATGCGCT 1003 Query 38853 GGAGCAGGGAGCGCATCGCGCCGCCGTCGAGCTGGAACACCGAGAGCGTGTCGCCCCTGG 38912 |||||| |||| ||||| ||| |||||||| | ||||||||| || | || Sbjct 1002 TGAGCAGTTCCTGCATGCCGCCGGAGTCCAGCTGGAAGATGCCGAGCGTGTCACCGCGGG 943 Query 38913 CCAGCAGCTCGTACGTCGCGGGGTCATCCAGCGGGATGTTCTCGATGTCGACGTGCTCAC 38972 ||||||| || || | ||| ||||| || || | |||||| | ||||| || ||| | Sbjct 942 CCAGCAGTTCATAGGACGCCGGGTCGTCGGTCGACAGGTTCTCCAGGTCGAAGTCCTCGC 883 Query 38973 CACGGTTGCGGCGGATGTTCTCGACCGCGTCGCCCATGATCGTGAGGTTCCGGAGCCCGA 39032 | ||||| ||||||||| | |||| | |||| |||||||| || ||||| | Sbjct 882 CCCGGTTCTTCTTGATGTTCTCCAGGCAGTCGGCGATGACGGTGAGGTTGCGCAGCCCCA 823 Query 39033 GGAAGTCCATCTTCAGCAGGCCCAGAGCCTCGCAGCTCGGGTAGT-CGAACTGCGTGATC 39091 |||||||||||||||||||||| | ||||| ||| ||||||| | | | | |||||| Sbjct 822 GGAAGTCCATCTTCAGCAGGCCGATGGCCTCACAGGCCGGGTAGGGCCAGCCG-GTGATC 764 Query 39092 GTTACGCCGTCCGCAGGCCGCACCCACGTCGGGATGTGATCGACCAGCGGCTCGTCGGAC 39151 ||||||| || ||| |||| |||||||||| |||| ||||||| | || | Sbjct 763 AGGGCGCCGTCGTTGGGGCGCTTCCACATCGGGATGTGGTCGAGCAGCGGCACCGAGGCC 704 Query 39152 ATGATCACACCGGCTGCGTGCACGCCCATCTGCCGGACGAGACCTTCGAGGCCACGCGCG 39211 |||||||| || ||||| |||| ||| ||||| | || || ||||| | ||| Sbjct 703 ATGATCACTGCGCAGGCGTGGCCGCCGGCCTGGCGGACCACGCCCTCCAGGCCGAGGGCG 644 Query 39212 AGGTCAATGACCTCCTTCGCGTCCTTGTCGTTCTCGTACAGCGCCCGGATCTCGCCCGCC 39271 ||| || |||||| | || ||| ||||| || | |||||||| | ||| Sbjct 643 TCGTCGTAGATCTCCTTGACCACCGGATCGGTCTCGATGAGGGTGCGGATCTCCGCGGCC 584 Query 39272 TCGTCGTAGCGCGGGTGCTCCGGGTTGGTGATGCCCTCCAGGGGCAT---CGACGCGCCC 39328 || ||||||||||||||||||| | ||||||| ||| || || | ||| || Sbjct 583 GCGCCGTAGCGCGGGTGCTCCGGATCCATGATGCCGGACAGCGGGATGTCCTTCGCCGCC 524 Query 39329 ATCACATCGGCCGGGTACGCCTTGGTCAGCTTCTCGCCGACCTGAAA---GGGCT---TG 39382 | | || | || |||||||| | | ||| ||| ||| || ||||| | Sbjct 523 TGCGCCGGGGGCAGG---GCCTTGGTGATCCGGTCGGCGATCTGGAAGCCGGGCTGGCCG 467 Query 39383 TCCAGCACGCGGGCCGCGTCCTTCATCGCGTTGCGGGCCTTGATCCTGCCGTACGTCGCG 39442 | | ||||||| |||||||| ||||| | || ||| | | ||||| | || | Sbjct 466 TGGTGGGCGCGGGCGGCGTCCTTGATCGCCTGCTTGGTCTTCACCGTGCCGAAGGTGATG 407 Query 39443 ATCTGTGCGACCTTGTCGCTGCCGTACTTCTCGGTGACGTACCGGATCACGTCGCCACGG 39502 | ||| ||||||||||| ||| | |||| || | |||| ||||||| ||| | Sbjct 406 ACCTGGGCGACCTTGTCCTCGCCCCAGTTCTGGGCGGCGTAGCGGATCATCTCGGAA--- 350 Query 39503 CGACGGTCAT---CGAAGTCGATGTCCACGTCGGGCATGGAGACGCGCTCAGGGTTCAGG 39559 || ||||||| ||||||||||||| | ||||| |||| ||| || ||||| ||| Sbjct 349 CGCCGGTCATCGGCGAAGTCGATGTCGATATCGGGGGCGGAGGGGCGTTCCGGGTTGAGG 290 Query 39560 AACCGCTCGAAGATGAGCCCGTGAGGGATGGGGTCCAGGTCGGTGATCCCGAGGGCGTAC 39619 || |||||||| || |||||||| ||||||||| | || ||||||| || ||||| Sbjct 289 AATCGCTCGAACATCAGCCCGTGCTCGATGGGGTCGATGTTGGTGATCGTCAGTGCGTAG 230 Query 39620 GCGGCCAGCGAGCCAGCCGCAGAGCCACGCCCAGGGCCGACCCACACACCGTTCTCCTTC 39679 ||| |||| | ||| || || |||||||| || |||||||| | | ||| | Sbjct 229 GCGACCAGGGCGCCGGCGGCGGAGCCACGGCCCGGGCCGACGGAGATGCCGATGGAGCGG 170 Query 39680 GCCCAGCCGATGAAGTCGGCGACGACGAGGAAGTACGACGGGAACCCCATCTGGTTGATC 39739 || ||||| ||||||||||||||||||||| |||||| | ||| || || ||| Sbjct 169 GCGTGCTTGATGAGGTCGGCGACGACGAGGAAGTAGGACGGGTAGCCCTTCATGTCGATG 110 Query 39740 ATGTCGATCTCGTAGTCG 39757 | ||||||||| ||| Sbjct 109 ACACTGATCTCGTACTCG 92 >SEQ43235 Length=559 Score = 156 bits (172), Expect = 1e-33 Identities = 181/244 (74%), Gaps = 0/244 (0%) Strand=Plus/Plus Query 40113 AGTCGTTGGTGACCACCGGGGTGAGACCGAGGCGCTGACCGAGGCGGTAGAGGTCGTCGC 40172 ||||||||||||||| ||| | ||| ||||||| | |||| | ||||||||| | Sbjct 6 AGTCGTTGGTGACCAGCGGCGGGAGGGCGAGGCGGCGTCCGATCTCGAGGAGGTCGTCCC 65 Query 40173 GGACGCGCCGCTCGATCTCCAGGCCGTGGTCCATGATCTCCAGGAAGAAGTTGTCCTTCC 40232 |||| ||| |||||| ||||||||||||||||| ||| |||||| ||||||| | Sbjct 66 GGACCCGCTTCTCGATGGACAGGCCGTGGTCCATGAGCTCGAGGAAGTAGTTGTCGCGGC 125 Query 40233 CGAAGATCTCCCGCCACTTCGCAGCCTCGGCGACGGCCTCCTCGTACTGACCGAGGTTGA 40292 || |||| ||| |||| ||||| || | ||| ||||| | | |||| ||||| | Sbjct 126 CGTAGATGTCCTGCCATTTCGCCGCGGCCTCGAGCGCCTCGTTGAACTGGCCGAGCCGCA 185 Query 40293 GCCGGGTCATCACAGCACCACCGGGGCATCCCGTGGTGCCGATCAGGCCCTCTGCGTGCT 40352 |||||||| ||| | || |||||| || |||||| |||| ||| || ||||||| Sbjct 186 GCCGGGTCTGCACCTCGCCGGAGGGGCAGCCGGTGGTGGCGATGCTGCCGTCGGCGTGCT 245 Query 40353 CGGC 40356 |||| Sbjct 246 CGGC 249 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 160152269100750