Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20nasuta_20[genbank_20GCA_5F002222885.1_202017-07-20] 46,105 sequences; 137,224,182 total letters Query= NC_029018.1 Length=50856 Score E Sequences producing significant alignments: (Bits) Value SEQ24884 91.5 5e-14 SEQ25496 84.2 7e-12 >SEQ24884 Length=1939 Score = 91.5 bits (100), Expect = 5e-14 Identities = 98/129 (76%), Gaps = 3/129 (2%) Strand=Plus/Minus Query 4719 CACTACGTCGCGTGCATGGGCTACGAC---GACACCCCCGGTGCTCGGGCGGTCTGGATC 4775 |||||| ||||| |||||| |||| | |||||| ||||| || |||||| | Sbjct 579 CACTACCTCGCGGTCATGGGGTACGCCCGCGACACCGGCGGTGTCCGCCACGTCTGGCTG 520 Query 4776 GCCGACAGCGGCTTCCAGCCGCAGGGCTACTGGATCTCGTTCGACCAGTGCGCCACGCTG 4835 ||||||||||| ||| | ||||| |||| ||| | |||||||||||| |||||| || Sbjct 519 GCCGACAGCGGGTTCGACCCGCACGGCTCGTGGGTGACGTTCGACCAGTTCGCCACCATG 460 Query 4836 ATCCCGCCG 4844 ||||| ||| Sbjct 459 ATCCCCCCG 451 >SEQ25496 Length=2929 Score = 84.2 bits (92), Expect = 7e-12 Identities = 67/78 (86%), Gaps = 2/78 (3%) Strand=Plus/Plus Query 3837 CGTAGCTCAATTGGTCAGAGCAGCGGTCTCCAAAGCCGCCGGCTGCAGGTTCGAGTCCTG 3896 ||| |||||||||| ||||||||||||||||||| |||| || ||||||||| ||||||| Sbjct 403 CGTGGCTCAATTGG-CAGAGCAGCGGTCTCCAAAACCGCAGGTTGCAGGTTCAAGTCCTG 461 Query 3897 CCGTGTCTGCAACCACCC 3914 || |||||| ||||| Sbjct 462 TCGCCCCTGCAA-CACCC 478 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 162528567372180