Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20nasuta_20[genbank_20GCA_5F002222885.1_202017-07-20]
46,105 sequences; 137,224,182 total letters
Query= NC_029079.1
Length=75339
Score E
Sequences producing significant alignments: (Bits) Value
SEQ13951 435 1e-117
SEQ22413 147 1e-30
SEQ32968 143 1e-29
>SEQ13951
Length=2429
Score = 435 bits (482), Expect = 1e-117
Identities = 590/817 (72%), Gaps = 9/817 (1%)
Strand=Plus/Minus
Query 66104 TATCGCTCTGGACGGCGCTCTGGGCATCGGGGGGTACCCGAGGGGCCGGGTGGTGGAAAT 66163
|||||| | ||| ||| || |||||||| |||| |||| ||||||| || || || ||
Sbjct 1968 TATCGCGATCAACGTCGCGCTCGGCATCGGCGGGTTCCCGCGGGGCCGTGTCGTCGAGAT 1909
Query 66164 CTACGGCCCAGAATCTTCAGGGAAGTCAACTCTGTGTCTCCACGCGGTGGCCAATGCCCA 66223
|||||| || || || || || ||| | || || || ||||| || ||| | || ||
Sbjct 1908 CTACGGTCCGGAGTCCTCGGGTAAGACCACGGTGGCGCTGCACGCTGTCGCCGAGGCGCA 1849
Query 66224 GAAGGCCGGTGGCAACGCTGCCTACATCGACGCTGAGCACTCCCTGGACCCTGAGTACGC 66283
||||| ||| |||| ||| |||| ||||||||| |||||| |||| ||||| ||||||||
Sbjct 1848 GAAGGGCGGCGGCATCGCCGCCTTCATCGACGCGGAGCACGCCCTCGACCCCGAGTACGC 1789
Query 66284 CAAGGCGCTCGGTGTGGACCTCGACAACCTCGTGGTGGTTCAGCCGGACACTGGCGAGCA 66343
||| ||||| |||||| ||||||||| | || ||||||||||| ||||||||
Sbjct 1788 GAAGAACCTCGGGGTGGACACGGACAACCTCCTCGTCTCCCAGCCGGACACCGGCGAGCA 1729
Query 66344 GGCCCTGGAGATCGTTGACCTCCTCGTCAAGTCTGGCGAGCTGTCCATCGTCGTCGTTGA 66403
||| || ||||||| ||| | |||||| ||| |||| | | |||| |||| || ||
Sbjct 1728 GGCACTCGAGATCGCCGACATGCTCGTCCGGTCGGGCGCGGTCGACATCATCGTGGTGGA 1669
Query 66404 CTCTGTGGCGGCCCTGGTGCCGCGCGCCGAGCTCGAAGGCGACATCGGGGACAGTCACGT 66463
||| || ||||| ||| ||| || ||| |||| || || || || |||||||||||
Sbjct 1668 CTCGGTCGCGGCGCTGACCCCGAAGGCGGAGATCGAGGGGGAGATGGGCGACAGTCACGT 1609
Query 66464 CGGCCTGCACGCGCGCCTCATGTCGCAGGCCATGCGCAAGCTCACCGGCACCATC-TCCA 66522
||| ||||| || ||||||||| ||||| |||||||| | ||||| | || |||
Sbjct 1608 CGGTCTGCAGGCCCGCCTCATGAGCCAGGCACTGCGCAAGATGACCGGTGCACTCAGCCA 1549
Query 66523 GCACCAACACGCTGACGCTCTGGGTCAACCAGTTGCGCGAGAAGATCGGCAACGTGGGCT 66582
| ||| ||| | ||| |||||||| | |||||||||||||| |||| |
Sbjct 1548 G-ACCGGCACCACCGCCATCTTCATCAACCAGCTCCGCGAGAAGATCGG---CGTGATGT 1493
Query 66583 ACGGCCCGAACGAGACCACCACGGGCGGCAAGGCTTTGAGGTTCTACGCCTCAGTCCGCA 66642
||| || |||||||| |||||||||||||| ||| ||||||||| || ||||||
Sbjct 1492 TCGGTTCGCCGGAGACCACGACGGGCGGCAAGGCACTGAAGTTCTACGCTTCGGTCCGCT 1433
Query 66643 TGGATGTCCGTCGCATCGCCACCGAGAAGGAAGGCGATGAGGCTGTCGGCAACCGCACCC 66702
|| |||| || || || ||||| || | || || ||||| ||||| |||
Sbjct 1432 GCGACATCCGGCGGGTCCAGACGCTCAAGGACGGGCAGGATGCGGTCGGTAACCGGACCA 1373
Query 66703 GGGTGAAGGTCGTCAAGAACAAGCTGGCCCCGCCGCACCGCAATGCCGAGTTCTCCGTCG 66762
| ||||| |||||||||||||| | | |||||| | | ||||| ||| |||
Sbjct 1372 AGATGAAGATCGTCAAGAACAAGGTCTCGCCGCCGTTCAAGATCGCCGAATTCGATGTCC 1313
Query 66763 TGTACGGGGAGGGCATCTCGCGTGA--GGTCGAACTCCTCGACCTGGCCGTGTCGCAGGG 66820
| ||||| |||||||||| || || |||||| || ||||||||| |||| | ||
Sbjct 1312 TCTACGGACAGGGCATCTCCCGGGAAGGGTCGA--TCATCGACCTGGGCGTGGACAACGG 1255
Query 66821 CCTGGTGAAGAAGTCGGGCGCCTGGTTCAAGTACGGGGACAAGAACGTCGCCCAGGGCAA 66880
||| | |||||||| ||| |||||| || ||| || | | | | | ||||||||
Sbjct 1254 ACTGATCAAGAAGTCCGGCTCCTGGTACACCTACAAGGGCGACCAGCTGGGGCAGGGCAA 1195
Query 66881 GCCCAAGGCCGTCCAGTGGCTCAAGGCCAACCCGGAC 66917
| |||||| | ||| ||||||| |||||||||
Sbjct 1194 GGAGAAGGCCCGCGAGTTCCTCAAGGAGAACCCGGAC 1158
>SEQ22413
Length=7522
Score = 147 bits (162), Expect = 1e-30
Identities = 220/311 (71%), Gaps = 11/311 (4%)
Strand=Plus/Minus
Query 59478 TCGTCGGCACCCTGACCGCCGACCCCGAGCTGCGGTTCACCCAAGGTGGGCAGGCCGTCG 59537
||||||||| ||| || ||||||||| |||| | ||||| | || || |||
Sbjct 3674 TCGTCGGCAACCTCGTGGCGGACCCCGAGTTGCGCTACACCCCCAGCGGTGCCGCGGTCA 3615
Query 59538 CCAACTTCACCGTCGTGTCCAACGAACGCCGCCGCGACGCCCAGGGCAAC---TGGGTCG 59594
|||||||| || | |||| || ||| |||| | ||| |||| |||||||
Sbjct 3614 CCAACTTCCGGGTGGCTTCCACACCGCGACGCTTCGACTCACAGACCAACCAGTGGGTCG 3555
Query 59595 ACGGCGACGCCACATTCCTCCGCTGCACCATCTGGCGCGACGCCGCCGAGAACGTAGCGG 59654
||| ||| ||| ||||| ||||| |||||||||| ||||||||||||||| ||
Sbjct 3554 ACGACGAGGCCTTGTTCCTGACCTGCAACATCTGGCGCACCGCCGCCGAGAACGTCGCCA 3495
Query 59655 AAAGCCTCCAGAAAGGCCAGCGCGTCATCGT----GCATGGCTACCTCAAGCAGCGCTCC 59710
| ||||| || || ||| | || || ||||| | || | | |||| || |||
Sbjct 3494 ACAGCCTGCACAAGGGCGACCGGGTGATCGTCACCGGCCGGTTGCGTCAA----CGGTCC 3439
Query 59711 TTCGAGACCAAGGAAGGCGACAAGCGCACCGTCATCGAGGTGGAGGTAGACGAGATCGGC 59770
| ||||||| || || || ||||||||||| ||||||||||| |||||| |||||
Sbjct 3438 TACGAGACCCGCGAGGGTGAGAAGCGCACCGTGTTCGAGGTGGAGACCGACGAGGTCGGC 3379
Query 59771 CCGTCGCTGCG 59781
|| ||||||||
Sbjct 3378 CCCTCGCTGCG 3368
>SEQ32968
Length=2597
Score = 143 bits (158), Expect = 1e-29
Identities = 235/335 (70%), Gaps = 9/335 (3%)
Strand=Plus/Minus
Query 59478 TCGTCGGCACCCTGACCGCCGACCCCGAGCTGCGGTTCACCCAAGGTGGGCAGGCCGTCG 59537
||||||||| ||| || ||| || || ||| ||| | |||| ||| ||||
Sbjct 2172 TCGTCGGCAACCTCGTTGCTGACGTTGACCTTAGGTACACGCCCAGTGGCGCGGCGGTCG 2113
Query 59538 CCAACTTCACCGTCGTGTCCAACGAACGCCGCCG---CGACGCCCAGGGCAAC---TGGG 59591
| |||||| ||||| ||| |||| | ||| || |||| | || ||| ||||
Sbjct 2112 CGAACTTCCGCGTCGCGTC-AACG--CCCCGTCGGTTCGACTCGAAGTCGAACCAGTGGG 2056
Query 59592 TCGACGGCGACGCCACATTCCTCCGCTGCACCATCTGGCGCGACGCCGCCGAGAACGTAG 59651
||||||| || || |||||| |||||| | |||||||| | |||||||||||||| |
Sbjct 2055 TCGACGGGGAGGCACTGTTCCTCAGCTGCAACGTCTGGCGCCAGGCCGCCGAGAACGTCG 1996
Query 59652 CGGAAAGCCTCCAGAAAGGCCAGCGCGTCATCGTGCATGGCTACCTCAAGCAGCGCTCCT 59711
|| | ||| || || || | ||||| ||||| ||| || ||||| ||||
Sbjct 1995 CGAACTCCCTGCACAAGGGGGACCGCGTGATCGTCTCCGGCCGGCTGCGCCAGCGGTCCT 1936
Query 59712 TCGAGACCAAGGAAGGCGACAAGCGCACCGTCATCGAGGTGGAGGTAGACGAGATCGGCC 59771
||| ||| || || || ||||||||||| ||||||||||||| |||||| ||||||
Sbjct 1935 ACGAAACCCGTGAGGGTGAGAAGCGCACCGTGTTCGAGGTGGAGGTCGACGAGGTCGGCC 1876
Query 59772 CGTCGCTGCGGTGGGCAACAGCTCGCGTGTCCAAG 59806
|||| || |||| || || || | || |||||
Sbjct 1875 CGTCTCTCCGGTACGCCACCGCACAGGTCGCCAAG 1841
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 240824603446500
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |