Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20nasuta_20[genbank_20GCA_5F002222885.1_202017-07-20] 46,105 sequences; 137,224,182 total letters Query= NC_029079.1 Length=75339 Score E Sequences producing significant alignments: (Bits) Value SEQ13951 435 1e-117 SEQ22413 147 1e-30 SEQ32968 143 1e-29 >SEQ13951 Length=2429 Score = 435 bits (482), Expect = 1e-117 Identities = 590/817 (72%), Gaps = 9/817 (1%) Strand=Plus/Minus Query 66104 TATCGCTCTGGACGGCGCTCTGGGCATCGGGGGGTACCCGAGGGGCCGGGTGGTGGAAAT 66163 |||||| | ||| ||| || |||||||| |||| |||| ||||||| || || || || Sbjct 1968 TATCGCGATCAACGTCGCGCTCGGCATCGGCGGGTTCCCGCGGGGCCGTGTCGTCGAGAT 1909 Query 66164 CTACGGCCCAGAATCTTCAGGGAAGTCAACTCTGTGTCTCCACGCGGTGGCCAATGCCCA 66223 |||||| || || || || || ||| | || || || ||||| || ||| | || || Sbjct 1908 CTACGGTCCGGAGTCCTCGGGTAAGACCACGGTGGCGCTGCACGCTGTCGCCGAGGCGCA 1849 Query 66224 GAAGGCCGGTGGCAACGCTGCCTACATCGACGCTGAGCACTCCCTGGACCCTGAGTACGC 66283 ||||| ||| |||| ||| |||| ||||||||| |||||| |||| ||||| |||||||| Sbjct 1848 GAAGGGCGGCGGCATCGCCGCCTTCATCGACGCGGAGCACGCCCTCGACCCCGAGTACGC 1789 Query 66284 CAAGGCGCTCGGTGTGGACCTCGACAACCTCGTGGTGGTTCAGCCGGACACTGGCGAGCA 66343 ||| ||||| |||||| ||||||||| | || ||||||||||| |||||||| Sbjct 1788 GAAGAACCTCGGGGTGGACACGGACAACCTCCTCGTCTCCCAGCCGGACACCGGCGAGCA 1729 Query 66344 GGCCCTGGAGATCGTTGACCTCCTCGTCAAGTCTGGCGAGCTGTCCATCGTCGTCGTTGA 66403 ||| || ||||||| ||| | |||||| ||| |||| | | |||| |||| || || Sbjct 1728 GGCACTCGAGATCGCCGACATGCTCGTCCGGTCGGGCGCGGTCGACATCATCGTGGTGGA 1669 Query 66404 CTCTGTGGCGGCCCTGGTGCCGCGCGCCGAGCTCGAAGGCGACATCGGGGACAGTCACGT 66463 ||| || ||||| ||| ||| || ||| |||| || || || || ||||||||||| Sbjct 1668 CTCGGTCGCGGCGCTGACCCCGAAGGCGGAGATCGAGGGGGAGATGGGCGACAGTCACGT 1609 Query 66464 CGGCCTGCACGCGCGCCTCATGTCGCAGGCCATGCGCAAGCTCACCGGCACCATC-TCCA 66522 ||| ||||| || ||||||||| ||||| |||||||| | ||||| | || ||| Sbjct 1608 CGGTCTGCAGGCCCGCCTCATGAGCCAGGCACTGCGCAAGATGACCGGTGCACTCAGCCA 1549 Query 66523 GCACCAACACGCTGACGCTCTGGGTCAACCAGTTGCGCGAGAAGATCGGCAACGTGGGCT 66582 | ||| ||| | ||| |||||||| | |||||||||||||| |||| | Sbjct 1548 G-ACCGGCACCACCGCCATCTTCATCAACCAGCTCCGCGAGAAGATCGG---CGTGATGT 1493 Query 66583 ACGGCCCGAACGAGACCACCACGGGCGGCAAGGCTTTGAGGTTCTACGCCTCAGTCCGCA 66642 ||| || |||||||| |||||||||||||| ||| ||||||||| || |||||| Sbjct 1492 TCGGTTCGCCGGAGACCACGACGGGCGGCAAGGCACTGAAGTTCTACGCTTCGGTCCGCT 1433 Query 66643 TGGATGTCCGTCGCATCGCCACCGAGAAGGAAGGCGATGAGGCTGTCGGCAACCGCACCC 66702 || |||| || || || ||||| || | || || ||||| ||||| ||| Sbjct 1432 GCGACATCCGGCGGGTCCAGACGCTCAAGGACGGGCAGGATGCGGTCGGTAACCGGACCA 1373 Query 66703 GGGTGAAGGTCGTCAAGAACAAGCTGGCCCCGCCGCACCGCAATGCCGAGTTCTCCGTCG 66762 | ||||| |||||||||||||| | | |||||| | | ||||| ||| ||| Sbjct 1372 AGATGAAGATCGTCAAGAACAAGGTCTCGCCGCCGTTCAAGATCGCCGAATTCGATGTCC 1313 Query 66763 TGTACGGGGAGGGCATCTCGCGTGA--GGTCGAACTCCTCGACCTGGCCGTGTCGCAGGG 66820 | ||||| |||||||||| || || |||||| || ||||||||| |||| | || Sbjct 1312 TCTACGGACAGGGCATCTCCCGGGAAGGGTCGA--TCATCGACCTGGGCGTGGACAACGG 1255 Query 66821 CCTGGTGAAGAAGTCGGGCGCCTGGTTCAAGTACGGGGACAAGAACGTCGCCCAGGGCAA 66880 ||| | |||||||| ||| |||||| || ||| || | | | | | |||||||| Sbjct 1254 ACTGATCAAGAAGTCCGGCTCCTGGTACACCTACAAGGGCGACCAGCTGGGGCAGGGCAA 1195 Query 66881 GCCCAAGGCCGTCCAGTGGCTCAAGGCCAACCCGGAC 66917 | |||||| | ||| ||||||| ||||||||| Sbjct 1194 GGAGAAGGCCCGCGAGTTCCTCAAGGAGAACCCGGAC 1158 >SEQ22413 Length=7522 Score = 147 bits (162), Expect = 1e-30 Identities = 220/311 (71%), Gaps = 11/311 (4%) Strand=Plus/Minus Query 59478 TCGTCGGCACCCTGACCGCCGACCCCGAGCTGCGGTTCACCCAAGGTGGGCAGGCCGTCG 59537 ||||||||| ||| || ||||||||| |||| | ||||| | || || ||| Sbjct 3674 TCGTCGGCAACCTCGTGGCGGACCCCGAGTTGCGCTACACCCCCAGCGGTGCCGCGGTCA 3615 Query 59538 CCAACTTCACCGTCGTGTCCAACGAACGCCGCCGCGACGCCCAGGGCAAC---TGGGTCG 59594 |||||||| || | |||| || ||| |||| | ||| |||| ||||||| Sbjct 3614 CCAACTTCCGGGTGGCTTCCACACCGCGACGCTTCGACTCACAGACCAACCAGTGGGTCG 3555 Query 59595 ACGGCGACGCCACATTCCTCCGCTGCACCATCTGGCGCGACGCCGCCGAGAACGTAGCGG 59654 ||| ||| ||| ||||| ||||| |||||||||| ||||||||||||||| || Sbjct 3554 ACGACGAGGCCTTGTTCCTGACCTGCAACATCTGGCGCACCGCCGCCGAGAACGTCGCCA 3495 Query 59655 AAAGCCTCCAGAAAGGCCAGCGCGTCATCGT----GCATGGCTACCTCAAGCAGCGCTCC 59710 | ||||| || || ||| | || || ||||| | || | | |||| || ||| Sbjct 3494 ACAGCCTGCACAAGGGCGACCGGGTGATCGTCACCGGCCGGTTGCGTCAA----CGGTCC 3439 Query 59711 TTCGAGACCAAGGAAGGCGACAAGCGCACCGTCATCGAGGTGGAGGTAGACGAGATCGGC 59770 | ||||||| || || || ||||||||||| ||||||||||| |||||| ||||| Sbjct 3438 TACGAGACCCGCGAGGGTGAGAAGCGCACCGTGTTCGAGGTGGAGACCGACGAGGTCGGC 3379 Query 59771 CCGTCGCTGCG 59781 || |||||||| Sbjct 3378 CCCTCGCTGCG 3368 >SEQ32968 Length=2597 Score = 143 bits (158), Expect = 1e-29 Identities = 235/335 (70%), Gaps = 9/335 (3%) Strand=Plus/Minus Query 59478 TCGTCGGCACCCTGACCGCCGACCCCGAGCTGCGGTTCACCCAAGGTGGGCAGGCCGTCG 59537 ||||||||| ||| || ||| || || ||| ||| | |||| ||| |||| Sbjct 2172 TCGTCGGCAACCTCGTTGCTGACGTTGACCTTAGGTACACGCCCAGTGGCGCGGCGGTCG 2113 Query 59538 CCAACTTCACCGTCGTGTCCAACGAACGCCGCCG---CGACGCCCAGGGCAAC---TGGG 59591 | |||||| ||||| ||| |||| | ||| || |||| | || ||| |||| Sbjct 2112 CGAACTTCCGCGTCGCGTC-AACG--CCCCGTCGGTTCGACTCGAAGTCGAACCAGTGGG 2056 Query 59592 TCGACGGCGACGCCACATTCCTCCGCTGCACCATCTGGCGCGACGCCGCCGAGAACGTAG 59651 ||||||| || || |||||| |||||| | |||||||| | |||||||||||||| | Sbjct 2055 TCGACGGGGAGGCACTGTTCCTCAGCTGCAACGTCTGGCGCCAGGCCGCCGAGAACGTCG 1996 Query 59652 CGGAAAGCCTCCAGAAAGGCCAGCGCGTCATCGTGCATGGCTACCTCAAGCAGCGCTCCT 59711 || | ||| || || || | ||||| ||||| ||| || ||||| |||| Sbjct 1995 CGAACTCCCTGCACAAGGGGGACCGCGTGATCGTCTCCGGCCGGCTGCGCCAGCGGTCCT 1936 Query 59712 TCGAGACCAAGGAAGGCGACAAGCGCACCGTCATCGAGGTGGAGGTAGACGAGATCGGCC 59771 ||| ||| || || || ||||||||||| ||||||||||||| |||||| |||||| Sbjct 1935 ACGAAACCCGTGAGGGTGAGAAGCGCACCGTGTTCGAGGTGGAGGTCGACGAGGTCGGCC 1876 Query 59772 CGTCGCTGCGGTGGGCAACAGCTCGCGTGTCCAAG 59806 |||| || |||| || || || | || ||||| Sbjct 1875 CGTCTCTCCGGTACGCCACCGCACAGGTCGCCAAG 1841 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 240824603446500