Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20nasuta_20[genbank_20GCA_5F002222885.1_202017-07-20] 46,105 sequences; 137,224,182 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq3808 116 3e-21 SEQ36764 96.9 3e-15 >seq3808 Length=15542 Score = 116 bits (128), Expect = 3e-21 Identities = 267/399 (67%), Gaps = 10/399 (3%) Strand=Plus/Plus Query 34401 TGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTATCGGGGGAGCGAAG 34460 |||| ||||||||||| || |||||| | || ||||| || |||||||| |||| | Sbjct 5522 TGGGTCCGGTCTACGGCTTTCAGTGGCGTCATTTTGGAGCCGAGTATCGCACCTGCGATG 5581 Query 34461 CGGACTATTCGGGACAGGGAGCGGACCAGCTGCAGTACGTGATCGACAC--CTTGAAGCG 34518 ||||| ||||| || || ||||||||| | ||||| || || | ||| | Sbjct 5582 ATGACTACAGCGGACAAGGCATCGATCAGCTGCAGCAAGTGATTGATACGATTCGAAAC- 5640 Query 34519 GAACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGAACCCGAAGGATCTCCCTCTGAT 34578 || || || | | ||| | |||| |||||||| || |||| | || || Sbjct 5641 -AATCCCTCGGATCGTCGTATCATTATGTCGGCGTGGAATCCCTTGGATATACCCAAAAT 5699 Query 34579 GGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCG-AAT-----GGGGAGCT 34632 ||| || || || |||||| | | || ||||| || || ||| || || || Sbjct 5700 GGCACTGCCTCCTTGCCACTGCTTGGTGCAGTTCTATGTGTCGCAATCTCGAGGAGAACT 5759 Query 34633 GTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAACATTGC 34692 ||||| || || || || ||| | |||||||||| | ||||| || || ||||| || Sbjct 5760 CTCCTGTCATCTGTACCAGCGAAGTGCAGACATGGGGCTCGGGGTTCCTTTTAACATCGC 5819 Query 34693 TAGTTACGCTCTGCTCACGTACATGATCGCTCATGTCGTGGGGTTGGTTCCTGGGGAGCT 34752 ||| || |||||||| |||||||| || ||||| || ||| ||||| || | Sbjct 5820 CTCTTATGCGCTGCTCACCTACATGATTGCCCATGTGACCGGATTGAAGCCTGGTGACTT 5879 Query 34753 GGTGCATACGTTGGGGGATGCGCATATCTACCTGAACCA 34791 || || || |||| ||| | ||| | || || || || Sbjct 5880 TGTCCACACCATGGGAGATTCTCATGTGTATCTTAATCA 5918 Score = 116 bits (128), Expect = 3e-21 Identities = 267/399 (67%), Gaps = 10/399 (3%) Strand=Plus/Minus Query 6554 TGGTTCAGGTAGATATGCGCATCCCCCAACGTATGCACCAGCTCCCCAGGAACCAACCCC 6613 || || || || | ||| | ||| |||| || || || | || ||||| ||| || Sbjct 5918 TGATTAAGATACACATGAGAATCTCCCATGGTGTGGACAAAGTCACCAGGCTTCAATCCG 5859 Query 6614 ACGACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCT 6673 ||||| || |||||||| |||||||| || ||| || ||||| || || ||||| Sbjct 5858 GTCACATGGGCAATCATGTAGGTGAGCAGCGCATAAGAGGCGATGTTAAAAGGAACCCCG 5799 Query 6674 AACCCCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCC-----ATT-CGCG 6727 | |||||||||| | ||| || || || || ||||| || || || ||| || Sbjct 5798 AGCCCCATGTCTGCACTTCGCTGGTACAGATGACAGGAGAGTTCTCCTCGAGATTGCGAC 5739 Query 6728 ACGTAGAATTGGCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCTTCGGG 6787 || ||||| || | | |||||| || || || ||||| || | |||| || Sbjct 5738 ACATAGAACTGCACCAAGCAGTGGCAAGGAGGCAGTGCCATTTTGGGTATATCCAAGGGA 5679 Query 6788 TTCCACGCGCACATCACGATCCTTCTGTCATCAGGGTTCCGCTTCAAG--GTGTCGATCA 6845 |||||||| |||| | ||| | | || || || | ||| | || || |||| Sbjct 5678 TTCCACGCCGACATAATGATACGACGATCCGAGGGATT--GTTTCGAATCGTATCAATCA 5621 Query 6846 CGTACTGCAGCTGGTCCGCTCCCTGTCCCGAATAGTCCGCTTCGCTCCCCCGATACTCCG 6905 | | ||||||||| || || ||||| ||||| | |||| |||||||| | Sbjct 5620 CTTGCTGCAGCTGATCGATGCCTTGTCCGCTGTAGTCATCATCGCAGGTGCGATACTCGG 5561 Query 6906 CCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCA 6944 | ||||| || | |||||| || ||||||||||| |||| Sbjct 5560 CTCCAAAATGACGCCACTGAAAGCCGTAGACCGGACCCA 5522 >SEQ36764 Length=622 Score = 96.9 bits (106), Expect = 3e-15 Identities = 113/150 (75%), Gaps = 2/150 (1%) Strand=Plus/Plus Query 6620 TGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCCC 6679 || |||| ||||| || |||| ||||| || |||||||||||||| || | | Sbjct 326 TGGGCGAACATGTGGGTCCGCAGCGCGTAGGAGGCGATGTTGAACGGCACGCCGAGGAAC 385 Query 6680 ATGTCTCCCGAT-CGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAATTG 6738 ||||| | || | || || |||||||||||||||||| ||| | |||||||||| || Sbjct 386 ATGTC-CGCGCTGCGCTGGTAGAGCTGGCAGGACAGCGTCCCGTCGGCGACGTAGAGCTG 444 Query 6739 GCAGAGGGTGTGGCACGGGGGGAGCGCCAT 6768 | | || |||||||||||| |||||||| Sbjct 445 GAACAGCAGGTGGCACGGGGGCAGCGCCAT 474 Score = 96.9 bits (106), Expect = 3e-15 Identities = 113/150 (75%), Gaps = 2/150 (1%) Strand=Plus/Minus Query 34577 ATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAATGGGGAGCTGTCC 34636 |||||||| |||||||||||| || | ||| |||||||||| | ||| ||||||| Sbjct 474 ATGGCGCTGCCCCCGTGCCACCTGCTGTTCCAGCTCTACGTCGCCGACGGGACGCTGTCC 415 Query 34637 TGCCAGCTCTATCAACG-ATCGGGAGACATGGGGTTAGGGGTGCCGTTCAACATTGCTAG 34695 ||||||||||| || || | || | |||||| | || |||||||||||||| || Sbjct 414 TGCCAGCTCTACCAGCGCAGCGCG-GACATGTTCCTCGGCGTGCCGTTCAACATCGCCTC 356 Query 34696 TTACGCTCTGCTCACGTACATGATCGCTCA 34725 ||||| |||| || ||||| |||| || Sbjct 355 CTACGCGCTGCGGACCCACATGTTCGCCCA 326 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448004060775600