Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20nasuta_20[genbank_20GCA_5F002222885.1_202017-07-20] 46,105 sequences; 137,224,182 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value SEQ29629 145 2e-29 seq4710 134 3e-26 SEQ10860 129 1e-24 seq6417 100 7e-16 >SEQ29629 Length=739 Score = 145 bits (160), Expect = 2e-29 Identities = 137/175 (78%), Gaps = 0/175 (0%) Strand=Plus/Plus Query 7551 CCAACTTTACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTAT 7610 |||| |||| ||||| ||| ||||||| ||||| ||| | || ||||| ||| | || || Sbjct 166 CCAAATTTATAACGTAATTGTTACGGCTCATGCTTTTATCATAATTTTTTTTATAGTGAT 225 Query 7611 GCCGGTTATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGA 7670 || |||| || || ||||| ||||||||||| ||||||||||| | || ||||| || Sbjct 226 ACCAATTATAATTGGTGGTTTTGGAAATTGATTAGTTCCTTTAATATTAGGAGCTCCAGA 285 Query 7671 TATGGCTTTTCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCTTCCTTA 7725 ||| |||||||| | | || |||||||| ||||||||| |||| || || ||| Sbjct 286 TATAGCTTTTCCTCGAATAAATAATATAAGATTTTGATTATTACCCCCATCATTA 340 Score = 102 bits (112), Expect = 2e-16 Identities = 82/99 (83%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 370672 TTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGA 370731 ||| ||||| ||||||||||| |||||||||||||| || || ||||| ||||| || | Sbjct 739 TTCTGGATGTCCAAAAAATCAAAATAAATGTTGATATAGAATTGGATCTCCTCCTCCGGC 680 Query 370732 TGGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTAA 370770 |||||||||||| ||||| || |||| ||||||||| Sbjct 679 TGGATCAAAAAATGATGTATTTAAGTTTCGATCAGTTAA 641 Score = 91.5 bits (100), Expect = 4e-13 Identities = 107/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 371401 ATATTAAATATCGTAGTAATAAAGTTTATAGCGCCTAGAAGAGAAGATATACCTGCAAGA 371460 ||||| | || |||| |||||| |||| ||| |||| || ||| || || ||||| | | Sbjct 525 ATATTTATAATAGTAGAAATAAAATTTACAGCTCCTAAAATAGATGAAATTCCTGCTAAA 466 Query 371461 TGTAAACTAAATATTGCTAAATCGACGGAACCGCCGGAGTGAGCTACAATAGAACTTAAC 371520 |||| |||||| || || ||||| || ||| | || ||||||||| || | | Sbjct 465 TGTAGACTAAAAATAGCCAAATCTACAGAAGCCCCTCTATGAGCTACATTACTAGAAAGA 406 Query 371521 GGCGGGTAAACTGTTCAGCCGGTTC 371545 || |||||||||||||| || |||| Sbjct 405 GGAGGGTAAACTGTTCATCCAGTTC 381 >seq4710 Length=78879 Score = 134 bits (148), Expect = 3e-26 Identities = 166/226 (73%), Gaps = 1/226 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGA-GAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAG 225550 ||| || | ||| || | ||| | | || || || || |||| ||||| || | || || Sbjct 8608 ACGCAGACGCAGCACCAAGTGCAAGGGTCGACTCCTTCTGGATGTTGTAGTCTGACAGAG 8667 Query 225551 TTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATAC 225610 | | ||||| || |||||||| ||||||||||| || || || || || || || || | Sbjct 8668 TGCGACCATCCTCCAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGATCTGGGGGGATTC 8727 Query 225611 CTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTA 225670 ||||||||||||||||||| ||||||| || ||||| || || | ||||| || | Sbjct 8728 CTTCCTTGTCTTGGATCTTAGCCTTCACATTCTCAATGGTATCAGATGGCTCCACCTCCA 8787 Query 225671 ACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 ||||| ||||| || |||| || || | ||| | ||||||||| Sbjct 8788 GGGTGATGGTCTTTCCAGTCAGGGTCTTCACGAAGATTTGCATTTT 8833 >SEQ10860 Length=7223 Score = 129 bits (142), Expect = 1e-24 Identities = 161/221 (73%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 ||||| | || || | ||| | || || |||||||||| ||||||||||| | ||| Sbjct 1460 CGAAGGCGGAGCACCAAGTGCAATGTAGACTCTTTTTGGATATTGTAATCGGAAAGAGTG 1519 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | ||||||||| | ||||| || || ||||| | || ||||| || || ||||| ||| Sbjct 1520 CGCCCATCTTCCAATTGCTTGCCGGCAAAGATCAAACGCTGTTGATCTGGAGGAATTCCT 1579 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672 || ||||| || ||||| || ||| ||| ||||| || || | ||| || || | Sbjct 1580 TCTTTGTCCTGAATCTTGGCTTTGACATTTTCAATGGTATCCGACGGTTCGACCTCAAGA 1639 Query 225673 GTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| ||||| ||||| | ||||| | ||| | |||||| Sbjct 1640 GTGATGGTCTTACCCGTGAGGGTTTTAACGAAGATTTGCAT 1680 >seq6417 Length=10883 Score = 100 bits (110), Expect = 7e-16 Identities = 99/127 (78%), Gaps = 1/127 (1%) Strand=Plus/Minus Query 7736 TGGTAAGATTCTTTGCGTTATATCAAATTAAACCACATACTCCACCGCTTATACAATCTT 7795 ||||||| ||||| ||||| || ||||||||||||| ||||||||||| | | | Sbjct 3995 TGGTAAGGTTCTTCGCGTTGCTTCGAATTAAACCACATGCTCCACCGCTTGTGCGGGCCC 3936 Query 7796 CCGTCAGTTTCTTTGAGTTTTAACCTTGCGGTCGTAGTACTCAGGTGGAAT-ATTTACGC 7854 |||||| || |||||||||| | |||||||| |||| | | |||| ||| | || | || Sbjct 3935 CCGTCAATTCCTTTGAGTTTCAGCCTTGCGGCCGTACTCCCCAGGCGGAGTGCTTAATGC 3876 Query 7855 GTTAGCT 7861 ||||||| Sbjct 3875 GTTAGCT 3869 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1191826747596870