Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20nasuta_20[genbank_20GCA_5F002222885.1_202017-07-20] 46,105 sequences; 137,224,182 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq3808 136 3e-27 >seq3808 Length=15542 Score = 136 bits (150), Expect = 3e-27 Identities = 281/414 (68%), Gaps = 8/414 (2%) Strand=Plus/Minus Query 27145 GGTTCCACGTGATCCAGGTAGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGT 27204 |||||||| |||| || || || |||| ||||||| |||||||||||| || || || Sbjct 5927 GGTTCCACATGATTAAGATACACATGAGAATCTCCCATGGTGTGGACAAAGTCACCAGGC 5868 Query 27205 TCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAG 27264 | | ||||| || || || |||||||| ||||| || | || |||||||||||| Sbjct 5867 TTCAATCCGGTCACATGGGCAATCATGTAGGTGAGCAGCGCATAAGAGGCGATGTTAAAA 5808 Query 27265 GGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCC---- 27320 || ||||||||||||||||| | | |||||| || ||||| ||||| ||||| Sbjct 5807 GGAACCCCGAGCCCCATGTCTGCACTTCGCTGGTACAGATGACAGGAGAGTTCTCCTCGA 5748 Query 27321 -ATCGC-TTACGTAAAACTGACATATGGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAG 27378 || || || || ||||| | | |||||| ||||| || ||||| | | Sbjct 5747 GATTGCGACACATAGAACTGCACCAAGCAGTGGCAAGGAGGCAGTGCCATTTTGGGTATA 5688 Query 27379 TCTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGG 27438 || ||| ||||| || ||| ||||| || | || || ||||| | || Sbjct 5687 TCCAAGGGATTCCACGCCGACATAATGATACGACGATCCGAGGGATTGTTTCGAATCGTA 5628 Query 27439 TCCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTC-TACCCTCATGTCCGT 27497 || | | | ||||||||||| | || || |||||| | | || || || Sbjct 5627 TCAATCACTTGCTGCAGCTGATCGATGCCTTGTCCGCTGTAGTCATCATCGCAGGTGCG- 5569 Query 27498 GTACTCTGCTCCGAAATGCCTCCATTGGAACCCGTACACCGGTCCCAGGTCTCC 27551 ||||| ||||| ||||| | ||| || || ||||| ||||| ||||| || || Sbjct 5568 ATACTCGGCTCCAAAATGACGCCACTGAAAGCCGTAGACCGGACCCAGATCCCC 5515 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 369299572172255