Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20nasuta_20[genbank_20GCA_5F002222885.1_202017-07-20]
46,105 sequences; 137,224,182 total letters
Query= NC_030902.1
Length=41207
Score E
Sequences producing significant alignments: (Bits) Value
SEQ21083 545 6e-151
SEQ14794 104 6e-18
>SEQ21083
Length=3994
Score = 545 bits (604), Expect = 6e-151
Identities = 694/962 (72%), Gaps = 48/962 (5%)
Strand=Plus/Minus
Query 5238 CCATCACCCTCGCTGAGGCGAAGAAGAACACCCAGGAAGACTACGACCCGTTCGTCATCG 5297
|||||||||| ||||| || ||| ||||||||||| |||||||||||| ||||||||
Sbjct 2828 CCATCACCCTGGCTGACGCCAAGCTAAACACCCAGGAGGACTACGACCCGGCCGTCATCG 2769
Query 5298 ACGAGTTCCGCAAGGTCTCGGCACTGCTCGACGGCATGATCTTCGACGACGCAGTCAACC 5357
|||||||||| ||| ||| || || ||||||| |||||||||||| ||| |||||||
Sbjct 2768 ACGAGTTCCGGAAGTCCTCCGCTCTCCTCGACGCGATGATCTTCGACACCGCGGTCAACC 2709
Query 5358 CGGCAGGTGGCGGCGCGACCCTCACCTACGGCTACCGCCGACTGGTCGACCAGGCGAACG 5417
| || ||||||||||| || ||||||||||||||||| |||||| |||||| |||
Sbjct 2708 CCGCCCAGGGCGGCGCGACGCTGACCTACGGCTACCGCCGCCTGGTCACCCAGGCCGACG 2649
Query 5418 CCGCGTTCCGTGCGCTCAACAGCGAGTACACCGACCAGGCCGTCACCACGGTCCAGAAGA 5477
| || ||||| ||| ||||| ||||||| | ||| ||||||||| | ||
Sbjct 2648 CTGCATTCCGCGCGATCAACTCCGAGTACGCGGACTCCAACGTCACCACCGCCCGCTTCT 2589
Query 5478 GCGTGAACCTGGCCGTCCTCGGTGGGTCGTTCAGCATCGACCGTGTCGTCGCCAAGCTCG 5537
||| |||| || ||||||||||| |||||| |||||||| ||| ||||||| ||||
Sbjct 2588 CCGTCGACCTCGCGGTCCTCGGTGGCGCGTTCAAGATCGACCGCGTCCTCGCCAACCTCG 2529
Query 5538 GCCCGGCCGCCTCCGGCCAGATCGCCCTGCACATCGCGCAGCTCGCCAAGGCCGCTAGCG 5597
||||||| |||||| | || || ||||||| || | ||| ||||||||| | |
Sbjct 2528 GCCCGGCAGCCTCCAACGAGGTCACCCTGCAGATGGGCCAGAAGATCAAGGCCGCGAACA 2469
Query 5598 CGAAGTTCCAGGACGCCCTGATCAACGGCGACACCGCAACCGACGCCAACGGCTTCGACG 5657
| |||| |||||| |||||||||||| | |||| ||
Sbjct 2468 CCGCGTTCGCTGACGCCGTGATCAACGGCGTCGCCGC---------------------CG 2430
Query 5658 GCCTCTCGAAGGCCCTCACCGGGTCCGCCACCGAGATCACCTCGACCGCCGACTGGTCCG 5717
| ||| ||||| | || | |||| |||| | |||||||||||
Sbjct 2429 TCNNTCCGA-------CACCGAGATCGGCGCCGACGACACC------GTCGACTGGTCCG 2383
Query 5718 ACTTCGACACCAACCCGCGCGCCGAACACAAGGCACTCGACGTCATCGACGAGTTCCTGA 5777
||||||||||| || | || ||||| |||||||| |||||||||||||||||||||||
Sbjct 2382 ACTTCGACACCGACACCCGGGCCGAGCACAAGGCCCTCGACGTCATCGACGAGTTCCTCG 2323
Query 5778 TGTCGCTCGACGGTGCGCCGACGTTCCTCGTCGCGAACAAGGCCGCTCTGGCTCGTGTCC 5837
|||||||| | ||||| || || ||| ||||||||| | || || || ||||
Sbjct 2322 GCAACCTCGACGGCACCCCGACCGTCATCCTCGGCAACAAGGCCACCCTCGCCCGCGTCC 2263
Query 5838 GCGCCGCAGTCCGCCGCAGCGGCCAGTACGTGAAGGATCCCGTCGAGGGCCTCGTCGG-A 5896
||||||| | ||||||| |||||||||| ||||| || ||||||| |||||||||
Sbjct 2262 GCGCCGCCGCCCGCCGCGCCGGCCAGTACACCAAGGACCCGGTCGAGGACCTCGTCGGCG 2203
Query 5897 CCGTCGGGCCGCCCGGTCGAGCGTGAAACCTACGGCGGCATCACCCTCATCGACGCGGGT 5956
||| | ||||| ||| ||||||| || |||||||||| ||||| || ||||| ||||
Sbjct 2202 CCGGC-GGCCGGCCGATCGAGCGCGAGTCCTACGGCGGAGTCACCTTCGTCGACCCGGGC 2144
Query 5957 GAGAAGCCGGGCAGCTCGGCACCGGTCATCCCGGTCGACGGCACCACGAAG---AAGACC 6013
| ||| | |||| | | ||| |||||||| |||||| | |||| | ||
Sbjct 2143 AACAAGGCCGGCACCAACGACCCGATCATCCCGATCGACG---CAGAGAAGGGCACCACG 2087
Query 6014 GACATCTACGCGATCCGCGTCGGCCTCGACGGCTTCCACGCGGT---GACCACGGTCGGC 6070
| |||||||| ||||| ||||||||||||||||||||| || |||||| |||
Sbjct 2086 TCCCTCTACGCGGTCCGCATCGGCCTCGACGGCTTCCACGGAGTCACGACCACCACCGG- 2028
Query 6071 TCGCAGGTCATCCAGACGTGGCTGCCTGACTTCTCGACGTCCGGCGCGGTCAAGCGCGNN 6130
|| || | || | |||||||| |||||| | || |||||||||||||||||||
Sbjct 2027 --TGAGCTCGTGCACTCCTGGCTGCCGGACTTCACTACCTCCGGCGCGGTCAAGCGCGGC 1970
Query 6131 NNNNNNNNNNNNNNCCCGGTCGGCTGCGCACTGAAGGCGACCAAGGCTGCCGCAGTGCTG 6190
|||||||| | ||| || |||||||| ||||| ||||| ||||||
Sbjct 1969 GAGGTCGAGCTCGGCCCGGTCGCCGTCGCCCTCAAGGCGACGAAGGCGGCCGCCGTGCTG 1910
Query 6191 CG 6192
||
Sbjct 1909 CG 1908
>SEQ14794
Length=953
Score = 104 bits (114), Expect = 6e-18
Identities = 235/343 (69%), Gaps = 18/343 (5%)
Strand=Plus/Plus
Query 38130 GAGGTGACCTGGTTCAAGGTCGACGACGGTTTCTACGACCATCCGAAGCT-GACGGG-TG 38187
||||||||||||||||| | || || || |||||||||||||||||| | || ||| ||
Sbjct 468 GAGGTGACCTGGTTCAAAGCAGATGATGGGTTCTACGACCATCCGAAGGTCGAGGGGTTG 527
Query 38188 TCCCGATGGCGTCTCGTGGCCTGTGGGTGACGGCGGGCTCGTACTGTGCTCGGCATCTGA 38247
||| ||||| | ||||| | ||| | |||||||| | | || || || || |
Sbjct 528 TCC--ATGGCCGCCCGTGGGCGCTGGCTCACGGCGGGAACCTGGTGCGCGAAACACCTCA 585
Query 38248 CGGATGGGGTGATCTCGTGGCGTCAGATTCGGTCGCTCGGCGGTACTCGTGCACAGGTGC 38307
|||| ||||| |||||| | | | ||| | ||||| || || | | ||||| |
Sbjct 586 CGGACGGGGTCATCTCGGCGGCCCGCGTCCGGACTCTCGGGGGCACGCCAACTCAGGTTC 645
Query 38308 GTGGGCTCGTCGATGCG---GGCCTGTGGAGAGCGATTGGTGAGCGATCGGGCGACGATA 38364
||| ||| | |||| || |||| | |||||| | | | | || || ||
Sbjct 646 GTGCGCTGAT---TGCGCATGGATTGTG--GGTCGATTGTGGTCCCAATGTGC-ACCCTA 699
Query 38365 ---CGTACGCGTACCACGACTGGATCGGATCGCAACCGACGCGAACCGAGGTTCTGAACT 38421
|||| |||| || ||||||| | ||||||| | || | ||||||| || | |
Sbjct 700 AGTCGTATGCGTTTCATGACTGGAATGACATGCAACCGGCCCGGAACGAGGTTTTGGATT 759
Query 38422 CGCGCGAACGCGAGCGCGAGAAGAAA-GCAAAGTGGCGCGAGA 38463
|||| ||| | || ||||| |||||| || || |||||| |||
Sbjct 760 CGCGGGAAAGAGAACGCGAAAAGAAACGCGAA-TGGCGCAAGA 801
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 131668672323690
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |