Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20nasuta_20[genbank_20GCA_5F002222885.1_202017-07-20] 46,105 sequences; 137,224,182 total letters Query= NC_030902.1 Length=41207 Score E Sequences producing significant alignments: (Bits) Value SEQ21083 545 6e-151 SEQ14794 104 6e-18 >SEQ21083 Length=3994 Score = 545 bits (604), Expect = 6e-151 Identities = 694/962 (72%), Gaps = 48/962 (5%) Strand=Plus/Minus Query 5238 CCATCACCCTCGCTGAGGCGAAGAAGAACACCCAGGAAGACTACGACCCGTTCGTCATCG 5297 |||||||||| ||||| || ||| ||||||||||| |||||||||||| |||||||| Sbjct 2828 CCATCACCCTGGCTGACGCCAAGCTAAACACCCAGGAGGACTACGACCCGGCCGTCATCG 2769 Query 5298 ACGAGTTCCGCAAGGTCTCGGCACTGCTCGACGGCATGATCTTCGACGACGCAGTCAACC 5357 |||||||||| ||| ||| || || ||||||| |||||||||||| ||| ||||||| Sbjct 2768 ACGAGTTCCGGAAGTCCTCCGCTCTCCTCGACGCGATGATCTTCGACACCGCGGTCAACC 2709 Query 5358 CGGCAGGTGGCGGCGCGACCCTCACCTACGGCTACCGCCGACTGGTCGACCAGGCGAACG 5417 | || ||||||||||| || ||||||||||||||||| |||||| |||||| ||| Sbjct 2708 CCGCCCAGGGCGGCGCGACGCTGACCTACGGCTACCGCCGCCTGGTCACCCAGGCCGACG 2649 Query 5418 CCGCGTTCCGTGCGCTCAACAGCGAGTACACCGACCAGGCCGTCACCACGGTCCAGAAGA 5477 | || ||||| ||| ||||| ||||||| | ||| ||||||||| | || Sbjct 2648 CTGCATTCCGCGCGATCAACTCCGAGTACGCGGACTCCAACGTCACCACCGCCCGCTTCT 2589 Query 5478 GCGTGAACCTGGCCGTCCTCGGTGGGTCGTTCAGCATCGACCGTGTCGTCGCCAAGCTCG 5537 ||| |||| || ||||||||||| |||||| |||||||| ||| ||||||| |||| Sbjct 2588 CCGTCGACCTCGCGGTCCTCGGTGGCGCGTTCAAGATCGACCGCGTCCTCGCCAACCTCG 2529 Query 5538 GCCCGGCCGCCTCCGGCCAGATCGCCCTGCACATCGCGCAGCTCGCCAAGGCCGCTAGCG 5597 ||||||| |||||| | || || ||||||| || | ||| ||||||||| | | Sbjct 2528 GCCCGGCAGCCTCCAACGAGGTCACCCTGCAGATGGGCCAGAAGATCAAGGCCGCGAACA 2469 Query 5598 CGAAGTTCCAGGACGCCCTGATCAACGGCGACACCGCAACCGACGCCAACGGCTTCGACG 5657 | |||| |||||| |||||||||||| | |||| || Sbjct 2468 CCGCGTTCGCTGACGCCGTGATCAACGGCGTCGCCGC---------------------CG 2430 Query 5658 GCCTCTCGAAGGCCCTCACCGGGTCCGCCACCGAGATCACCTCGACCGCCGACTGGTCCG 5717 | ||| ||||| | || | |||| |||| | ||||||||||| Sbjct 2429 TCNNTCCGA-------CACCGAGATCGGCGCCGACGACACC------GTCGACTGGTCCG 2383 Query 5718 ACTTCGACACCAACCCGCGCGCCGAACACAAGGCACTCGACGTCATCGACGAGTTCCTGA 5777 ||||||||||| || | || ||||| |||||||| ||||||||||||||||||||||| Sbjct 2382 ACTTCGACACCGACACCCGGGCCGAGCACAAGGCCCTCGACGTCATCGACGAGTTCCTCG 2323 Query 5778 TGTCGCTCGACGGTGCGCCGACGTTCCTCGTCGCGAACAAGGCCGCTCTGGCTCGTGTCC 5837 |||||||| | ||||| || || ||| ||||||||| | || || || |||| Sbjct 2322 GCAACCTCGACGGCACCCCGACCGTCATCCTCGGCAACAAGGCCACCCTCGCCCGCGTCC 2263 Query 5838 GCGCCGCAGTCCGCCGCAGCGGCCAGTACGTGAAGGATCCCGTCGAGGGCCTCGTCGG-A 5896 ||||||| | ||||||| |||||||||| ||||| || ||||||| ||||||||| Sbjct 2262 GCGCCGCCGCCCGCCGCGCCGGCCAGTACACCAAGGACCCGGTCGAGGACCTCGTCGGCG 2203 Query 5897 CCGTCGGGCCGCCCGGTCGAGCGTGAAACCTACGGCGGCATCACCCTCATCGACGCGGGT 5956 ||| | ||||| ||| ||||||| || |||||||||| ||||| || ||||| |||| Sbjct 2202 CCGGC-GGCCGGCCGATCGAGCGCGAGTCCTACGGCGGAGTCACCTTCGTCGACCCGGGC 2144 Query 5957 GAGAAGCCGGGCAGCTCGGCACCGGTCATCCCGGTCGACGGCACCACGAAG---AAGACC 6013 | ||| | |||| | | ||| |||||||| |||||| | |||| | || Sbjct 2143 AACAAGGCCGGCACCAACGACCCGATCATCCCGATCGACG---CAGAGAAGGGCACCACG 2087 Query 6014 GACATCTACGCGATCCGCGTCGGCCTCGACGGCTTCCACGCGGT---GACCACGGTCGGC 6070 | |||||||| ||||| ||||||||||||||||||||| || |||||| ||| Sbjct 2086 TCCCTCTACGCGGTCCGCATCGGCCTCGACGGCTTCCACGGAGTCACGACCACCACCGG- 2028 Query 6071 TCGCAGGTCATCCAGACGTGGCTGCCTGACTTCTCGACGTCCGGCGCGGTCAAGCGCGNN 6130 || || | || | |||||||| |||||| | || ||||||||||||||||||| Sbjct 2027 --TGAGCTCGTGCACTCCTGGCTGCCGGACTTCACTACCTCCGGCGCGGTCAAGCGCGGC 1970 Query 6131 NNNNNNNNNNNNNNCCCGGTCGGCTGCGCACTGAAGGCGACCAAGGCTGCCGCAGTGCTG 6190 |||||||| | ||| || |||||||| ||||| ||||| |||||| Sbjct 1969 GAGGTCGAGCTCGGCCCGGTCGCCGTCGCCCTCAAGGCGACGAAGGCGGCCGCCGTGCTG 1910 Query 6191 CG 6192 || Sbjct 1909 CG 1908 >SEQ14794 Length=953 Score = 104 bits (114), Expect = 6e-18 Identities = 235/343 (69%), Gaps = 18/343 (5%) Strand=Plus/Plus Query 38130 GAGGTGACCTGGTTCAAGGTCGACGACGGTTTCTACGACCATCCGAAGCT-GACGGG-TG 38187 ||||||||||||||||| | || || || |||||||||||||||||| | || ||| || Sbjct 468 GAGGTGACCTGGTTCAAAGCAGATGATGGGTTCTACGACCATCCGAAGGTCGAGGGGTTG 527 Query 38188 TCCCGATGGCGTCTCGTGGCCTGTGGGTGACGGCGGGCTCGTACTGTGCTCGGCATCTGA 38247 ||| ||||| | ||||| | ||| | |||||||| | | || || || || | Sbjct 528 TCC--ATGGCCGCCCGTGGGCGCTGGCTCACGGCGGGAACCTGGTGCGCGAAACACCTCA 585 Query 38248 CGGATGGGGTGATCTCGTGGCGTCAGATTCGGTCGCTCGGCGGTACTCGTGCACAGGTGC 38307 |||| ||||| |||||| | | | ||| | ||||| || || | | ||||| | Sbjct 586 CGGACGGGGTCATCTCGGCGGCCCGCGTCCGGACTCTCGGGGGCACGCCAACTCAGGTTC 645 Query 38308 GTGGGCTCGTCGATGCG---GGCCTGTGGAGAGCGATTGGTGAGCGATCGGGCGACGATA 38364 ||| ||| | |||| || |||| | |||||| | | | | || || || Sbjct 646 GTGCGCTGAT---TGCGCATGGATTGTG--GGTCGATTGTGGTCCCAATGTGC-ACCCTA 699 Query 38365 ---CGTACGCGTACCACGACTGGATCGGATCGCAACCGACGCGAACCGAGGTTCTGAACT 38421 |||| |||| || ||||||| | ||||||| | || | ||||||| || | | Sbjct 700 AGTCGTATGCGTTTCATGACTGGAATGACATGCAACCGGCCCGGAACGAGGTTTTGGATT 759 Query 38422 CGCGCGAACGCGAGCGCGAGAAGAAA-GCAAAGTGGCGCGAGA 38463 |||| ||| | || ||||| |||||| || || |||||| ||| Sbjct 760 CGCGGGAAAGAGAACGCGAAAAGAAACGCGAA-TGGCGCAAGA 801 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 131668672323690