Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20nasuta_20[genbank_20GCA_5F002222885.1_202017-07-20] 46,105 sequences; 137,224,182 total letters Query= NC_030913.1 Length=58308 Score E Sequences producing significant alignments: (Bits) Value seq6253 251 3e-62 seq5449 98.7 4e-16 >seq6253 Length=4700 Score = 251 bits (278), Expect = 3e-62 Identities = 391/555 (70%), Gaps = 18/555 (3%) Strand=Plus/Minus Query 43694 CCTGACCCTCACCGACCTGTTCTGCGGCGCCGGCGGATCGTCGACGGGCGCCATCGACAT 43753 ||| |||||| ||||| | |||||||| ||||||||||| || || || || ||||| | Sbjct 4474 CCTCACCCTCTCCGACTTCTTCTGCGGTGCCGGCGGATCCTCCACCGGAGCACTCGACGT 4415 Query 43754 CCCGGGCGTCACCGTCCGGATCGCCTCGAACCACTGGGACCTCGCTGTCGAGACCCACAA 43813 ||| |||||| |||||| |||| | | ||||||||| ||||| ||||| |||||| | Sbjct 4414 CCCCGGCGTCGACGTCCGCGCCGCCGCCACCCACTGGGATCTCGCCGTCGAAACCCACCA 4355 Query 43814 CTCGAATCACCCCGACGCTGACCACCTGTGCGCGGACCTCTCGCAGATCGATCCCCGGTA 43873 | ||||| ||||| || ||| | ||||| ||| || ||| ||| || | | Sbjct 4354 GCGCCACCACCCGGACGCCGAACACATCTGCGCCGACATCAGCCAGTACGAGCCGAGCTT 4295 Query 43874 CTTCCCGACAACCGACATCCTGTGGGCCTCACCCGAGTGCACCAACCACTCGGTAGCGAA 43933 ||||| || ||| || ||| ||| ||| ||||||| |||| |||| ||| | Sbjct 4294 GTTCCCCCACACGGACCTCGCCTGGTTCTCCCCCTCCTGCACCAGCCACACGGTGGCGCA 4235 Query 43934 GGGC------CG---CAAACGGGTTGGCGCGCAACCAGACCTGTTCGGCGAGATCC---T 43981 |||| || | | |||| | ||| | || | ||| ||| || | || | Sbjct 4234 GGGCATGGCCCGTGCCGACCGGGCCGCCGC-CTAC--GTCCT---CGGAGAAACCCCCCT 4181 Query 43982 GCCCGACGCTGCATCGGAGCGGTCCCGAGCGACGATGTGGGACGTCCCGCGGTTCGCCGA 44041 ||||||| || || || ||||| || || ||||||||||| ||| ||| |||| Sbjct 4180 CCCCGACGACGCGCACGAACGATCCCGCGCCACCATGTGGGACGTGGTGCGCTTCACCGA 4121 Query 44042 GGTCCACCATTACCGCGCCGTGATCGTCGAGAACGTCGTCGACGCCTGGCATTGGGTTCC 44101 | |||||| ||| ||| || || |||||||||||| ||| | | | |||| || Sbjct 4120 GTACCACCACTACGCCGCGGTCATTGTCGAGAACGTCACCGAGGTCACCAAGTGGGCGCC 4061 Query 44102 GTTCCGCGCCTGGCTCATGGCTATGGACTGCCTCGGCTACGACCACCACATCGTCATGCT 44161 |||| ||| ||| ||||||| ||||| ||||||||| | |||| ||| |||||||| Sbjct 4060 ATTCCCCGCGTGGATCATGGCGATGGAAGCGCTCGGCTACAAGCACCGCATTGTCATGCT 4001 Query 44162 CAACTCGATGCACGCCCAGACGTTCGGCCCCGGGGCGCCGCAGTCCCGCGACCGCATGTA 44221 |||| ||||||||| || |||||||| || |||| ||||||||||| | || Sbjct 4000 CAACAGCATGCACGCCGGCCTGTACGGCCCCGCCGCCGCGCAATCCCGCGACCGGTTCTA 3941 Query 44222 CGTCGTGTTCTGGCA 44236 | |||||||||||| Sbjct 3940 CTGCGTGTTCTGGCA 3926 >seq5449 Length=2013 Score = 98.7 bits (108), Expect = 4e-16 Identities = 86/107 (80%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 53014 ACGCTCGAGGGGACCATGCTCGCGGCCTGGGGCGACTACGTGATCCGCGGTGTCCAGGGC 53073 || || ||||| ||||| ||| || ||| |||||| | ||||| ||| | ||| Sbjct 570 ACCCTGGAGGGAGACATGCGCGCCACCCCGGGGGACTACATCATCCGGGGTATTAGCGGC 629 Query 53074 GAGTTCTACCCGTGCAAGCCCGACATCTTCGCAGAGACCTACGACGA 53120 |||||||||||||||||||||||||||||||| ||||||||||| || Sbjct 630 GAGTTCTACCCGTGCAAGCCCGACATCTTCGCGGAGACCTACGAGGA 676 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 186361911542700