Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20nasuta_20[genbank_20GCA_5F002222885.1_202017-07-20]
46,105 sequences; 137,224,182 total letters
Query= NC_030916.1
Length=56212
Score E
Sequences producing significant alignments: (Bits) Value
seq6253 297 7e-76
SEQ18518 91.5 5e-14
>seq6253
Length=4700
Score = 297 bits (328), Expect = 7e-76
Identities = 433/606 (71%), Gaps = 17/606 (3%)
Strand=Plus/Minus
Query 47064 CCTCACCGTCGCCGACTTCTTCTGCGGTGCAGGCGGCTCGAGCACCGGCGCCATCCAGGT 47123
||||||| || ||||||||||||||||||| ||||| || |||||| || || | ||
Sbjct 4474 CCTCACCCTCTCCGACTTCTTCTGCGGTGCCGGCGGATCCTCCACCGGAGCACTCGACGT 4415
Query 47124 CCCGGGCATCGAGGTCGTCGCAGCCGCGAACCACTGGCAGCTCGCCGTCGACACCCACAA 47183
||| ||| |||| ||| ||| ||||| | ||||||| | ||||||||||| |||||| |
Sbjct 4414 CCCCGGCGTCGACGTCCGCGCCGCCGCCACCCACTGGGATCTCGCCGTCGAAACCCACCA 4355
Query 47184 CACGAACCACCCCGACGCCGCACACATCTGCGCCGACCTGTCGCAGTACGACCCGCGGTA 47243
||||||| ||||||| |||||||||||||||| | |||||||| ||| | |
Sbjct 4354 GCGCCACCACCCGGACGCCGAACACATCTGCGCCGACATCAGCCAGTACGAGCCGAGCTT 4295
Query 47244 CTTCCCGGCCAGCGACATCGGCTGGTTCAGCCCGGAGTGCACCAACCACTCGCAGGCCAA 47303
||||| || ||| ||| ||||||| ||| ||||||| |||| || ||| |
Sbjct 4294 GTTCCCCCACACGGACCTCGCCTGGTTCTCCCCCTCCTGCACCAGCCACACGGTGGCGCA 4235
Query 47304 GGGCAAGAAGCGCGCCCTGCGCGGCGACGCCCAGCCGGACCTATTCGGCGAGA---TCCT 47360
||||| | || ||| || | || |||| || | |||| || | |||
Sbjct 4234 GGGCATGGCCCGTGCCGACCGGGCCGCCGCC------TACGTCCTCGGAGAAACCCCCCT 4181
Query 47361 GCCCGACGCCGCCGCCGAGCGGTCCAGAGCGACGATGTGGGACGTCGTCCGGTTCACCGA 47420
||||||| ||| ||| || ||| | || || ||||||||||| || || ||||||||
Sbjct 4180 CCCCGACGACGCGCACGAACGATCCCGCGCCACCATGTGGGACGTGGTGCGCTTCACCGA 4121
Query 47421 GCACTTCAAGTACCGGATCGTCATCACCGAGAACGTGATCGAGGCCGCCGCGTGGGCACT 47480
| || | | ||| ||||| ||||||||| | ||||| | || |||||| |
Sbjct 4120 GTACCACCACTACGCCGCGGTCATTGTCGAGAACGTCACCGAGGTCACCAAGTGGGCGCC 4061
Query 47481 GTTCGACGCGTGGATCGCCGCGATGCGCGCCCTCGGCTACCGGCACCGCCTCGTCATGCT 47540
||| |||||||||| |||||| || ||||||||| ||||||| | ||||||||
Sbjct 4060 ATTCCCCGCGTGGATCATGGCGATGGAAGCGCTCGGCTACAAGCACCGCATTGTCATGCT 4001
Query 47541 GAACTCGATGCACGCGCAGCTCGCCGGCCCCGGCGCCGCGCAGTCCCGCGACCGCATGTA 47600
||| |||||||| || |||||||| ||||||||| ||||||||||| | ||
Sbjct 4000 CAACAGCATGCACGCCGGCCTGTACGGCCCCGCCGCCGCGCAATCCCGCGACCGGTTCTA 3941
Query 47601 CGTGGTGTTCTG---GCGCGAAGGCGACCGGGAGCCGGACCTCGAACGTC-TCGTCCGCC 47656
| |||||||| || ||| | ||| || ||||| |||| ||| | ||||| |||
Sbjct 3940 CTGCGTGTTCTGGCAGCCCGACATC-ACC--GACCCGGATCTCG-ACGCCGTCGTCAGCC 3885
Query 47657 CCGAGG 47662
|| |||
Sbjct 3884 CCCAGG 3879
>SEQ18518
Length=6842
Score = 91.5 bits (100), Expect = 5e-14
Identities = 117/159 (74%), Gaps = 2/159 (1%)
Strand=Plus/Plus
Query 46520 CGACCCGGACCTGTGGTTCCCCGAGCGGGGCGGATCGACCCGCGACGCGAAGCGGATCTG 46579
||| ||||| || ||||| ||| ||||||||||||||| || ||||||||||||||
Sbjct 357 CGATCCGGAGGCGTTCTTCCCGGAGAAGGGCGGATCGACCCGGGAGGCGAAGCGGATCTG 416
Query 46580 CAGGCGC-TGCCCCGTCCAGGAGAAGTGCCTGCAGCAGGCACTCGACGCGGGGGAGCGGT 46638
| |||| ||| |||| || ||||||| || | |||||||| | |||||||
Sbjct 417 C-CGCGCATGCGGGGTCCGCGACGAGTGCCTCGAGTACGCACTCGAGCACGATGAGCGGT 475
Query 46639 TCGGAGTGTGGGGCGGCGTCAGCGAACGCGAACGCCGCC 46677
|||| | |||||||| | ||| ||||| || ||||
Sbjct 476 TCGGGATCTGGGGCGGACTGTCCGAGCGCGAGCGTCGCC 514
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 179658383713740
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |