Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20nasuta_20[genbank_20GCA_5F002222885.1_202017-07-20] 46,105 sequences; 137,224,182 total letters Query= NC_030916.1 Length=56212 Score E Sequences producing significant alignments: (Bits) Value seq6253 297 7e-76 SEQ18518 91.5 5e-14 >seq6253 Length=4700 Score = 297 bits (328), Expect = 7e-76 Identities = 433/606 (71%), Gaps = 17/606 (3%) Strand=Plus/Minus Query 47064 CCTCACCGTCGCCGACTTCTTCTGCGGTGCAGGCGGCTCGAGCACCGGCGCCATCCAGGT 47123 ||||||| || ||||||||||||||||||| ||||| || |||||| || || | || Sbjct 4474 CCTCACCCTCTCCGACTTCTTCTGCGGTGCCGGCGGATCCTCCACCGGAGCACTCGACGT 4415 Query 47124 CCCGGGCATCGAGGTCGTCGCAGCCGCGAACCACTGGCAGCTCGCCGTCGACACCCACAA 47183 ||| ||| |||| ||| ||| ||||| | ||||||| | ||||||||||| |||||| | Sbjct 4414 CCCCGGCGTCGACGTCCGCGCCGCCGCCACCCACTGGGATCTCGCCGTCGAAACCCACCA 4355 Query 47184 CACGAACCACCCCGACGCCGCACACATCTGCGCCGACCTGTCGCAGTACGACCCGCGGTA 47243 ||||||| ||||||| |||||||||||||||| | |||||||| ||| | | Sbjct 4354 GCGCCACCACCCGGACGCCGAACACATCTGCGCCGACATCAGCCAGTACGAGCCGAGCTT 4295 Query 47244 CTTCCCGGCCAGCGACATCGGCTGGTTCAGCCCGGAGTGCACCAACCACTCGCAGGCCAA 47303 ||||| || ||| ||| ||||||| ||| ||||||| |||| || ||| | Sbjct 4294 GTTCCCCCACACGGACCTCGCCTGGTTCTCCCCCTCCTGCACCAGCCACACGGTGGCGCA 4235 Query 47304 GGGCAAGAAGCGCGCCCTGCGCGGCGACGCCCAGCCGGACCTATTCGGCGAGA---TCCT 47360 ||||| | || ||| || | || |||| || | |||| || | ||| Sbjct 4234 GGGCATGGCCCGTGCCGACCGGGCCGCCGCC------TACGTCCTCGGAGAAACCCCCCT 4181 Query 47361 GCCCGACGCCGCCGCCGAGCGGTCCAGAGCGACGATGTGGGACGTCGTCCGGTTCACCGA 47420 ||||||| ||| ||| || ||| | || || ||||||||||| || || |||||||| Sbjct 4180 CCCCGACGACGCGCACGAACGATCCCGCGCCACCATGTGGGACGTGGTGCGCTTCACCGA 4121 Query 47421 GCACTTCAAGTACCGGATCGTCATCACCGAGAACGTGATCGAGGCCGCCGCGTGGGCACT 47480 | || | | ||| ||||| ||||||||| | ||||| | || |||||| | Sbjct 4120 GTACCACCACTACGCCGCGGTCATTGTCGAGAACGTCACCGAGGTCACCAAGTGGGCGCC 4061 Query 47481 GTTCGACGCGTGGATCGCCGCGATGCGCGCCCTCGGCTACCGGCACCGCCTCGTCATGCT 47540 ||| |||||||||| |||||| || ||||||||| ||||||| | |||||||| Sbjct 4060 ATTCCCCGCGTGGATCATGGCGATGGAAGCGCTCGGCTACAAGCACCGCATTGTCATGCT 4001 Query 47541 GAACTCGATGCACGCGCAGCTCGCCGGCCCCGGCGCCGCGCAGTCCCGCGACCGCATGTA 47600 ||| |||||||| || |||||||| ||||||||| ||||||||||| | || Sbjct 4000 CAACAGCATGCACGCCGGCCTGTACGGCCCCGCCGCCGCGCAATCCCGCGACCGGTTCTA 3941 Query 47601 CGTGGTGTTCTG---GCGCGAAGGCGACCGGGAGCCGGACCTCGAACGTC-TCGTCCGCC 47656 | |||||||| || ||| | ||| || ||||| |||| ||| | ||||| ||| Sbjct 3940 CTGCGTGTTCTGGCAGCCCGACATC-ACC--GACCCGGATCTCG-ACGCCGTCGTCAGCC 3885 Query 47657 CCGAGG 47662 || ||| Sbjct 3884 CCCAGG 3879 >SEQ18518 Length=6842 Score = 91.5 bits (100), Expect = 5e-14 Identities = 117/159 (74%), Gaps = 2/159 (1%) Strand=Plus/Plus Query 46520 CGACCCGGACCTGTGGTTCCCCGAGCGGGGCGGATCGACCCGCGACGCGAAGCGGATCTG 46579 ||| ||||| || ||||| ||| ||||||||||||||| || |||||||||||||| Sbjct 357 CGATCCGGAGGCGTTCTTCCCGGAGAAGGGCGGATCGACCCGGGAGGCGAAGCGGATCTG 416 Query 46580 CAGGCGC-TGCCCCGTCCAGGAGAAGTGCCTGCAGCAGGCACTCGACGCGGGGGAGCGGT 46638 | |||| ||| |||| || ||||||| || | |||||||| | ||||||| Sbjct 417 C-CGCGCATGCGGGGTCCGCGACGAGTGCCTCGAGTACGCACTCGAGCACGATGAGCGGT 475 Query 46639 TCGGAGTGTGGGGCGGCGTCAGCGAACGCGAACGCCGCC 46677 |||| | |||||||| | ||| ||||| || |||| Sbjct 476 TCGGGATCTGGGGCGGACTGTCCGAGCGCGAGCGTCGCC 514 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 179658383713740