Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20nasuta_20[genbank_20GCA_5F002222885.1_202017-07-20] 46,105 sequences; 137,224,182 total letters Query= NC_030917.1 Length=93577 Score E Sequences producing significant alignments: (Bits) Value SEQ45358 250 1e-61 SEQ32968 205 6e-48 SEQ43844 203 2e-47 SEQ22413 165 5e-36 SEQ37149 143 2e-29 SEQ25496 86.0 4e-12 >SEQ45358 Length=678 Score = 250 bits (276), Expect = 1e-61 Identities = 291/393 (74%), Gaps = 0/393 (0%) Strand=Plus/Minus Query 78221 GCCATCAACTGGAACAAGGTCACCGACGAGGTCGACGACACCGTGTGGGATCGACTCACC 78280 || ||||||||||||| || | |||||| ||| || ||||| || || ||| Sbjct 396 GCGATCAACTGGAACACCATCCCGGACGAGAAGGACCTGGAGGTCTGGGACCGGCTGACC 337 Query 78281 GGCAACTTCTGGTTGCCCGAGAAGGTACCGGTGTCCAACGACATCCCATCCTGGGACACC 78340 || ||||||||| ||||||||||||| ||| |||||||||||||| ||||| ||| Sbjct 336 GGAAACTTCTGGCTGCCCGAGAAGGTGCCGCTGTCCAACGACATCAAGAGCTGGGGCACG 277 Query 78341 CTTACGCCGGAAGAGAAGGAACTCACTATGCGTGTGTTCACCGGCCTCACCCTGCTCGAC 78400 || || || |||||| ||| ||||| || |||||||| || ||| |||| ||| Sbjct 276 CTCACCGAGGCGGAGAAGACCACCACCATGCGGGTCTTCACCGGTCTGACCATGCTGGAC 217 Query 78401 ACCATCCAGGGCACAGTTGGCGCCATCTCGCTCATCGCCGACGCCAACACCCCGCACGAG 78460 |||||||||||||| || || || | | ||||||| || || ||| || |||||| Sbjct 216 ACCATCCAGGGCACCGTCGGTGCGACCAGCCTCATCGAGGATTCCGTCACGCCCCACGAG 157 Query 78461 GAGGCGGTGCTCACCAACATCGCGTTCATGGAGTCGGTACACGCCAAGTCCTACAGCTCG 78520 ||||||||| ||||||||||||| ||||||||||| || ||||| | ||||||| ||| Sbjct 156 GAGGCGGTGTTCACCAACATCGCCTTCATGGAGTCCGTGCACGCGACGTCCTACTCGTCG 97 Query 78521 ATCTTCTCAACGCTATGCTCCTCCAAGCAGATTGACGAGGCGTTCCGTTGGTCGGAGGAG 78580 |||||| |||| |||| || || | | ||| || ||||| ||||||||| | Sbjct 96 ATCTTCATGCCGCTCGCCTCCGCCCCGCCGCTCCACGCCGCCTTCCGCTGGTCGGAGTCG 37 Query 78581 AACGAGTACCTGCAGCGCAAGGCCCAGATCGTC 78613 | || ||||||| |||||||| | || ||| Sbjct 36 TCCCAGACCCTGCAGAGCAAGGCCGATATAGTC 4 >SEQ32968 Length=2597 Score = 205 bits (226), Expect = 6e-48 Identities = 249/339 (73%), Gaps = 3/339 (1%) Strand=Plus/Minus Query 69642 ATCACCGTCATCGGTAACCTGACCGCCGACCCCGAACTCCGGTTCACGCCCTCCGGTGCC 69701 ||||| ||| |||| ||||| || ||| || || ||| ||||||| || || Sbjct 2179 ATCACTGTCGTCGGCAACCTCGTTGCTGACGTTGACCTTAGGTACACGCCCAGTGGCGCG 2120 Query 69702 GCGGTCGCGAACTTCACCGTCGCGTCGACCCCGCGGTACTTCGACAAGCAGTCGAACGAG 69761 ||||||||||||||| ||||||||| || || || |||||| | |||||||| || Sbjct 2119 GCGGTCGCGAACTTCCGCGTCGCGTCAACGCCCCGTCGGTTCGACTCGAAGTCGAACCAG 2060 Query 69762 TGGAAGGATGCCGAGGCACTCTTCCTGCGCTGCAACGTCTGGCGCGAGTACGCCGAGAAC 69821 ||| || | |||||||| ||||| ||||||||||||||||| || |||||||||| Sbjct 2059 TGGGTCGACGGGGAGGCACTGTTCCTCAGCTGCAACGTCTGGCGCCAGGCCGCCGAGAAC 2000 Query 69822 GTGACTGAGTCGCTCCAGAAGGGCGCCCGCGTCATCGTCCAGGGCAAGCTCAAGCAGCGG 69881 || | | || || || ||||| | |||||| |||||| ||| ||| |||||| Sbjct 1999 GTCGCGAACTCCCTGCACAAGGGGGACCGCGTGATCGTCTCCGGCCGGCTGCGCCAGCGG 1940 Query 69882 TCCTACGAGA---AGGATGGCCAGCCGCGCACCACCTTCGAGCTCGAGGTTGAGGAGATC 69938 |||||||| | || || || ||||||| |||||| | ||||| || ||| || Sbjct 1939 TCCTACGAAACCCGTGAGGGTGAGAAGCGCACCGTGTTCGAGGTGGAGGTCGACGAGGTC 1880 Query 69939 GGCCCCGCACTCCGGTACGCCACCGCCCGGGTCACCAAG 69977 ||||| | ||||||||||||||||| | |||| ||||| Sbjct 1879 GGCCCGTCTCTCCGGTACGCCACCGCACAGGTCGCCAAG 1841 >SEQ43844 Length=619 Score = 203 bits (224), Expect = 2e-47 Identities = 254/348 (73%), Gaps = 3/348 (1%) Strand=Plus/Plus Query 69633 GACACCGTCATCACCGTCATCGGTAACCTGACCGCCGACCCCGAACTCCGGTTCACGCCC 69692 |||||| ||||||| || |||| ||||| |||||||||||||| || | ||| || Sbjct 1 GACACCCCCATCACCATCGTCGGCAACCTCGTAGCCGACCCCGAACTGCGCTACACCCCG 60 Query 69693 TCCGGTGCCGCGGTCGCGAACTTCACCGTCGCGTCGACCCCGCGGTACTTCGACAAGCAG 69752 ||||| ||||| || ||| | ||||| || ||||| || ||| |||||||| Sbjct 61 TCCGGCGCCGCCGTGTGCAACGGCCGTGTCGCATCCACCCCCCGCACGTTCAACAAGCAG 120 Query 69753 TCGAACGAGTGGAAGGATGCCGAGGCACTCTTCCTGCGCTGCAACGTCTGGCGCGAGTAC 69812 | ||| ||||| |||||||||| ||||| ||||| || |||| | |||||| || Sbjct 121 ACCAACCAGTGGGAGGATGCCGAAGCACTGTTCCTCACCTTCAACCTGTGGCGCCAGGCA 180 Query 69813 GCCGAGAACGTGACTGAGTCGCTCCAGAAGGGCGCCCGCGTCATCGTCCAGGGCAAGCTC 69872 || ||||||||| | | || || ||||| | ||| || |||||| ||||| ||| Sbjct 181 GCGGAGAACGTGGCGAACAGCCTGCACAAGGGTGACCGGGTGATCGTCGTCGGCAATCTC 240 Query 69873 AAGCAGCGGTCCTACGA---GAAGGATGGCCAGCCGCGCACCACCTTCGAGCTCGAGGTT 69929 |||||||||||||| |||| ||| | |||||||| | |||| |||||| Sbjct 241 CGCCAGCGGTCCTACGAGTCGAAGACCGGCGACACGCGCACCGTGTACGAGATCGAGGCG 300 Query 69930 GAGGAGATCGGCCCCGCACTCCGGTACGCCACCGCCCGGGTCACCAAG 69977 || ||| ||||||| | ||||||||||||||||| | | |||||||| Sbjct 301 GACGAGGTCGGCCCTTCCCTCCGGTACGCCACCGCGCAGATCACCAAG 348 >SEQ22413 Length=7522 Score = 165 bits (182), Expect = 5e-36 Identities = 255/361 (71%), Gaps = 6/361 (2%) Strand=Plus/Minus Query 69623 AATGGCA-AATGACA--CCGTCATCACCGTCATCGGTAACCTGACCGCCGACCCCGAACT 69679 ||||||| || |||| || ||||||| || |||| ||||| || |||||||| | Sbjct 3703 AATGGCACAAGGACAGACCCCCATCACCATCGTCGGCAACCTCGTGGCGGACCCCGAGTT 3644 Query 69680 CCGGTTCACGCCCTCCGGTGCCGCGGTCGCGAACTTCACCGTCGCGTCGACCCCGCGGTA 69739 || | ||| ||| ||||||||||||| | |||||| || || || || ||||| Sbjct 3643 GCGCTACACCCCCAGCGGTGCCGCGGTCACCAACTTCCGGGTGGCTTCCACACCGCGACG 3584 Query 69740 CTTCGACAAGCAGTCGAACGAGTGGAAGGATGCCGAGGCACTCTTCCTGCGCTGCAACGT 69799 ||||||| ||| | ||| ||||| || | |||||| | |||||| ||||||| | Sbjct 3583 CTTCGACTCACAGACCAACCAGTGGGTCGACGACGAGGCCTTGTTCCTGACCTGCAACAT 3524 Query 69800 CTGGCGCGAGTACGCCGAGAACGTGACTGAGTCGCTCCAGAAGGGCGCCCGCGTCATCGT 69859 ||||||| |||||||||||| | | || || ||||||| ||| || ||||| Sbjct 3523 CTGGCGCACCGCCGCCGAGAACGTCGCCAACAGCCTGCACAAGGGCGACCGGGTGATCGT 3464 Query 69860 CCAGGGCAAGCTCAAGCAGCGGTCCTACGAGA---AGGATGGCCAGCCGCGCACCACCTT 69916 | ||| | | || ||||||||||||| || || || ||||||| || Sbjct 3463 CACCGGCCGGTTGCGTCAACGGTCCTACGAGACCCGCGAGGGTGAGAAGCGCACCGTGTT 3404 Query 69917 CGAGCTCGAGGTTGAGGAGATCGGCCCCGCACTCCGGTACGCCACCGCCCGGGTCACCAA 69976 |||| | ||| || ||| |||||||| | || || ||||||||||||| |||| |||| Sbjct 3403 CGAGGTGGAGACCGACGAGGTCGGCCCCTCGCTGCGCTACGCCACCGCCCAGGTCGCCAA 3344 Query 69977 G 69977 | Sbjct 3343 G 3343 >SEQ37149 Length=713 Score = 143 bits (158), Expect = 2e-29 Identities = 266/378 (70%), Gaps = 18/378 (5%) Strand=Plus/Plus Query 42100 CATCGGCCTGATCACCG--CGGAGGGCAGCGACGCCGAGAAGGACGTCCTGAACGTCGCC 42157 |||||| |||||||||| || || | || ||||||| |||||||| |||||| Sbjct 307 CATCGGGCTGATCACCGGTCGCGGGTCCGC--CGCCGAGCGCGACGTCCTCTCGGTCGCC 364 Query 42158 CGGGACCGATGGCCGCACGTGCAGTTCAAGC-CGTACCACATCCCTGTGCAGGGC--CAA 42214 |||||||| ||||| || ||||| || ||| | ||| | |||| |||||| | | Sbjct 365 CGGGACCGGTGGCCCGCGGTCGAGTTCGAGGTCGT-CAACACCGCTGTCCAGGGCGCCCA 423 Query 42215 CGCTGCGCAGGACGTGCCACCGCCGCCCTGAAGGCACTGGATGCCGACCCCGAGGTTGAC 42274 || | | | | || || ||||||||| | ||||| || || ||| ||| ||| Sbjct 424 GGCGGTCCCGCAGGT--CATCGCCGCCCTCGATCAGCTGGAAGCGGATCCCCGGGTCGAC 481 Query 42275 GTCATCATCTTCGCCCGCGGCGGCGGGTCCAACCAGGACCTCCTTCCCTGGTCCGACGAG 42334 ||||||||| |||||||||||||||| || |||||||||| |||| ||||| ||| Sbjct 482 GTCATCATCGTCGCCCGCGGCGGCGGCTCGGTGGAGGACCTCCTGCCCTTTTCCGAGGAG 541 Query 42335 GGCCTCTCCCGGGCCGTGTTCGC-CGCTAAC-ACGCCCACGGTCAGCGCCATCGGACACG 42392 ||| |||| | || ||| || | || || || ||||| ||||||||||| Sbjct 542 ACACTCGTCCGG--CACGTCCGCACGATGACGACTCCGGTCGTCAGTGCCATCGGACA-- 597 Query 42393 AGAAC--GACAAGCCGATGCTGGACCGGGTTGTGGACCTGCGAGCTGCGACTCCGACAGA 42450 ||||| |||| ||| | || ||| || | || ||||| || ||||| || || || Sbjct 598 AGAACCGGACACCCCGGTCCTCGACAATGTCGCCGATCTGCGGGCCGCGACGCCCACGGA 657 Query 42451 TGCGGCAAAACGTGTCGT 42468 || || || |||||||| Sbjct 658 CGCCGCGAAGCGTGTCGT 675 >SEQ25496 Length=2929 Score = 86.0 bits (94), Expect = 4e-12 Identities = 60/67 (90%), Gaps = 1/67 (1%) Strand=Plus/Plus Query 4263 GGGCGTAGCTCAATTGGAAGAGCAGCGGTCTCCAAAACCGCCGG-TGTAGGTTCGAGTCC 4321 |||||| |||||||||| ||||||||||||||||||||||| || || |||||| ||||| Sbjct 400 GGGCGTGGCTCAATTGGCAGAGCAGCGGTCTCCAAAACCGCAGGTTGCAGGTTCAAGTCC 459 Query 4322 TGCCGCC 4328 || |||| Sbjct 460 TGTCGCC 466 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 299153409789890