Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20nasuta_20[genbank_20GCA_5F002222885.1_202017-07-20]
46,105 sequences; 137,224,182 total letters
Query= NC_030921.1
Length=49768
Score E
Sequences producing significant alignments: (Bits) Value
SEQ29447 172 2e-38
SEQ26880 107 6e-19
SEQ27525 91.5 5e-14
>SEQ29447
Length=7397
Score = 172 bits (190), Expect = 2e-38
Identities = 250/348 (72%), Gaps = 5/348 (1%)
Strand=Plus/Minus
Query 15111 GCGACGGCGCTCGTCGAGGTCGGCGACCCGATGAAGATGTACGCCAACACCGCCGTCCCG 15170
|||||||| || || ||| || |||||||||||||||||||||| || || || |||
Sbjct 5641 GCGACGGCACTGGTGGAGTCGGGTGACCCGATGAAGATGTACGCCAGCAATGCGGTTCCG 5582
Query 15171 GAGTCTCTGAAGTTTCCACACGATGCCGTCGGCTCCGACCACGACTCGATCGGTCTGTTT 15230
||||| ||||| | || ||||| || |||| |||||| || || |||||||||||
Sbjct 5581 GAGTCGCTGAACTACCCGCACGACGCGATCGGGAGCGACCATGATTCCATCGGTCTGTTC 5522
Query 15231 CAGCAACGGCAGGCGGGCTGGGGCACTGTCGCCGACCGGATGGATCCGCACCGCTCGGCG 15290
||||| || ||||| || |||||||| ||||| | || |||||||||||| | |||
Sbjct 5521 CAGCAGCGTCAGGCCGGGTGGGGCACCGTCGCACAGCGTATGGATCCGCACGACAGTGCG 5462
Query 15291 AAGATGTTCTACGACGCCCTG--GTGAAGGTTCCCG-GCTGGGAAACGATGGACATGGGT 15347
|||||| | || ||| || | | | ||||||| |||| | |||||||| ||
Sbjct 5461 TCGATGTTTTTCGCCGCGATGCTGCGGAAGTTCCCGAACTGGCAGTCGATGGACCCCGGC 5402
Query 15348 GCCGCGGCACAGGCGGTGCAGCGCAGCGCATTCCCCGGCAAGTACGCCGGCCGGATGGCC 15407
|||| ||| |||| |||||| | ||||| || | | |||| | | |||||
Sbjct 5401 GCCGTGGCGCAGGGTGTGCAGGTCTCGGCATTTCCGGACCGGTACAACACCAAGATGGGT 5342
Query 15408 CGCGCGACGGAGCTCGTCGACAAGTTC-GGCATCTACGACCAGGGCGG 15454
| || |||||||| | || | | ||| | ||||||||||||||
Sbjct 5341 AGGGCTGAAGAGCTCGTTG-CATCTGCGGGCCTGTACGACCAGGGCGG 5295
>SEQ26880
Length=5820
Score = 107 bits (118), Expect = 6e-19
Identities = 129/174 (74%), Gaps = 5/174 (3%)
Strand=Plus/Minus
Query 15141 ATGAAGATGTACGCCAACACCGCCGTCCCGGAGTCTCTGAAGTTTCCACACGATGCCGTC 15200
|||||||||||||||||| | || || || ||||| |||| || || |||||||| |||
Sbjct 1517 ATGAAGATGTACGCCAACCCGGCGGTGCCTGAGTCCATGAACTTCCCCCACGATGCGGTC 1458
Query 15201 GGCTCCGACCACGACTCGATCGGTCTGTTTCAGCAACGGCA----GGCGGGCTGGGGCAC 15256
||| |||| |||||| |||| || || ||||| || | |||| | ||||||||
Sbjct 1457 GGCGGCGACGCGGACTCGGTCGGCCTTTTCCAGCAGCGCGACAATGGCGCG-TGGGGCAC 1399
Query 15257 TGTCGCCGACCGGATGGATCCGCACCGCTCGGCGAAGATGTTCTACGACGCCCT 15310
||| ||||| ||||| || | || || || ||||||||||||| |||
Sbjct 1398 CATCGAAGACCGCATGGACCCTGAGCGGTCCGCCGGAATGTTCTACGACGTCCT 1345
>SEQ27525
Length=13899
Score = 91.5 bits (100), Expect = 5e-14
Identities = 164/241 (68%), Gaps = 3/241 (1%)
Strand=Plus/Minus
Query 2840 GCGATCGCCTACCACGACAACATGATNNNNNTCGCCGGTCTCGCCCACTTCCTCAACCTC 2899
|||||||||||||||||| ||||| || | || || |||||||| |||||
Sbjct 9806 GCGATCGCCTACCACGACTCGATGATGGCGAAGGCGGTGCTGGCGCACTTCCTGAACCTT 9747
Query 2900 GAAGGCAAGGGCGGCTCGTACGCGCTGGCCAGCGTCCAGGAGCACACGTTCTCCCAGTCG 2959
|| |||||||||||||| ||||| ||||| |||| | | |||| |||||||
Sbjct 9746 GAGGGCAAGGGCGGCTCCTACGCCCTGGCGGAGACCCAGTCGGATCTGTTCATCCAGTCG 9687
Query 2960 GTGCAGACCGTCGGTGAGCAGACCCGCGACATCGGCAACGCGCACGTGATCGAGGACCTC 3019
|||||||| ||| || || |||| || || | |||| | | || ||||||
Sbjct 9686 CTGCAGACCATCGCGGACTGGATAGCGGACACCGCCACCCAGCACATCGTGGAAGACCTC 9627
Query 3020 GTCGACATCAACTT---CGGACTCGACGAGCAGGCTCCGCTGCTGGTGTTCGACGAGATC 3076
|| |||||| || |||| || | | ||| |||| | | ||| ||||| ||||
Sbjct 9626 GTTGACATCGCTTTCCCCGGATATGAGGGGGTGGCGCCGCGGATCGTGGTCGACCCGATC 9567
Query 3077 G 3077
|
Sbjct 9566 G 9566
Score = 82.4 bits (90), Expect = 2e-11
Identities = 163/233 (70%), Gaps = 10/233 (4%)
Strand=Plus/Minus
Query 5365 GGTGTCGTCGCGTTCCGCGAAGGCGATCCGACATTCCTCGACGACGACGTCCAGGATGTC 5424
|| |||||||| |||||||| | || ||| | ||||| ||||| | | |||| ||
Sbjct 7132 GGCGTCGTCGCTTTCCGCGAGGCCGCGGCGAACTACCTCGGTGACGATGCCGAGGAGATC 7073
Query 5425 GCCGAGTTCGGCGAGATCCCGGTGAGCGCCGGTC--GA-CTCGGCCTGCCGCGTGCCGCG 5481
||||||| |||||||||||| || | ||| || || |||||| | | ||||||
Sbjct 7072 GCCGAGTACGGCGAGATCCCCGT---CTCCGCTCCGGAGCTCGGCGCACTGAAGGCCGCG 7016
Query 5482 TACGCGACGAAGAAGGCTCTCGGCGTTCGCATCTCGAAGGAGATGATCGACGAGAACAAG 5541
| || | |||| | | | | |||||||| |||| | | |||||||||||
Sbjct 7015 TTCGGCATCAAGACCGGTGAGGCAATCCGCATCTCCTGGGAGCAGCGCAACGAGAACAAG 6956
Query 5542 ATCGACGCGGTGAACAAGCAG-ATCACCGGTCT-GCGCAACACCTTCGTCCGC 5592
||||||||||| || |||| ||| |||||| | || ||| ||||||||
Sbjct 6955 ATCGACGCGGT-CACCCGCAGCATCGACGGTCTCGAGC-GCACTGTCGTCCGC 6905
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 159048873537300
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |