Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20nasuta_20[genbank_20GCA_5F002222885.1_202017-07-20] 46,105 sequences; 137,224,182 total letters Query= NC_030921.1 Length=49768 Score E Sequences producing significant alignments: (Bits) Value SEQ29447 172 2e-38 SEQ26880 107 6e-19 SEQ27525 91.5 5e-14 >SEQ29447 Length=7397 Score = 172 bits (190), Expect = 2e-38 Identities = 250/348 (72%), Gaps = 5/348 (1%) Strand=Plus/Minus Query 15111 GCGACGGCGCTCGTCGAGGTCGGCGACCCGATGAAGATGTACGCCAACACCGCCGTCCCG 15170 |||||||| || || ||| || |||||||||||||||||||||| || || || ||| Sbjct 5641 GCGACGGCACTGGTGGAGTCGGGTGACCCGATGAAGATGTACGCCAGCAATGCGGTTCCG 5582 Query 15171 GAGTCTCTGAAGTTTCCACACGATGCCGTCGGCTCCGACCACGACTCGATCGGTCTGTTT 15230 ||||| ||||| | || ||||| || |||| |||||| || || ||||||||||| Sbjct 5581 GAGTCGCTGAACTACCCGCACGACGCGATCGGGAGCGACCATGATTCCATCGGTCTGTTC 5522 Query 15231 CAGCAACGGCAGGCGGGCTGGGGCACTGTCGCCGACCGGATGGATCCGCACCGCTCGGCG 15290 ||||| || ||||| || |||||||| ||||| | || |||||||||||| | ||| Sbjct 5521 CAGCAGCGTCAGGCCGGGTGGGGCACCGTCGCACAGCGTATGGATCCGCACGACAGTGCG 5462 Query 15291 AAGATGTTCTACGACGCCCTG--GTGAAGGTTCCCG-GCTGGGAAACGATGGACATGGGT 15347 |||||| | || ||| || | | | ||||||| |||| | |||||||| || Sbjct 5461 TCGATGTTTTTCGCCGCGATGCTGCGGAAGTTCCCGAACTGGCAGTCGATGGACCCCGGC 5402 Query 15348 GCCGCGGCACAGGCGGTGCAGCGCAGCGCATTCCCCGGCAAGTACGCCGGCCGGATGGCC 15407 |||| ||| |||| |||||| | ||||| || | | |||| | | ||||| Sbjct 5401 GCCGTGGCGCAGGGTGTGCAGGTCTCGGCATTTCCGGACCGGTACAACACCAAGATGGGT 5342 Query 15408 CGCGCGACGGAGCTCGTCGACAAGTTC-GGCATCTACGACCAGGGCGG 15454 | || |||||||| | || | | ||| | |||||||||||||| Sbjct 5341 AGGGCTGAAGAGCTCGTTG-CATCTGCGGGCCTGTACGACCAGGGCGG 5295 >SEQ26880 Length=5820 Score = 107 bits (118), Expect = 6e-19 Identities = 129/174 (74%), Gaps = 5/174 (3%) Strand=Plus/Minus Query 15141 ATGAAGATGTACGCCAACACCGCCGTCCCGGAGTCTCTGAAGTTTCCACACGATGCCGTC 15200 |||||||||||||||||| | || || || ||||| |||| || || |||||||| ||| Sbjct 1517 ATGAAGATGTACGCCAACCCGGCGGTGCCTGAGTCCATGAACTTCCCCCACGATGCGGTC 1458 Query 15201 GGCTCCGACCACGACTCGATCGGTCTGTTTCAGCAACGGCA----GGCGGGCTGGGGCAC 15256 ||| |||| |||||| |||| || || ||||| || | |||| | |||||||| Sbjct 1457 GGCGGCGACGCGGACTCGGTCGGCCTTTTCCAGCAGCGCGACAATGGCGCG-TGGGGCAC 1399 Query 15257 TGTCGCCGACCGGATGGATCCGCACCGCTCGGCGAAGATGTTCTACGACGCCCT 15310 ||| ||||| ||||| || | || || || ||||||||||||| ||| Sbjct 1398 CATCGAAGACCGCATGGACCCTGAGCGGTCCGCCGGAATGTTCTACGACGTCCT 1345 >SEQ27525 Length=13899 Score = 91.5 bits (100), Expect = 5e-14 Identities = 164/241 (68%), Gaps = 3/241 (1%) Strand=Plus/Minus Query 2840 GCGATCGCCTACCACGACAACATGATNNNNNTCGCCGGTCTCGCCCACTTCCTCAACCTC 2899 |||||||||||||||||| ||||| || | || || |||||||| ||||| Sbjct 9806 GCGATCGCCTACCACGACTCGATGATGGCGAAGGCGGTGCTGGCGCACTTCCTGAACCTT 9747 Query 2900 GAAGGCAAGGGCGGCTCGTACGCGCTGGCCAGCGTCCAGGAGCACACGTTCTCCCAGTCG 2959 || |||||||||||||| ||||| ||||| |||| | | |||| ||||||| Sbjct 9746 GAGGGCAAGGGCGGCTCCTACGCCCTGGCGGAGACCCAGTCGGATCTGTTCATCCAGTCG 9687 Query 2960 GTGCAGACCGTCGGTGAGCAGACCCGCGACATCGGCAACGCGCACGTGATCGAGGACCTC 3019 |||||||| ||| || || |||| || || | |||| | | || |||||| Sbjct 9686 CTGCAGACCATCGCGGACTGGATAGCGGACACCGCCACCCAGCACATCGTGGAAGACCTC 9627 Query 3020 GTCGACATCAACTT---CGGACTCGACGAGCAGGCTCCGCTGCTGGTGTTCGACGAGATC 3076 || |||||| || |||| || | | ||| |||| | | ||| ||||| |||| Sbjct 9626 GTTGACATCGCTTTCCCCGGATATGAGGGGGTGGCGCCGCGGATCGTGGTCGACCCGATC 9567 Query 3077 G 3077 | Sbjct 9566 G 9566 Score = 82.4 bits (90), Expect = 2e-11 Identities = 163/233 (70%), Gaps = 10/233 (4%) Strand=Plus/Minus Query 5365 GGTGTCGTCGCGTTCCGCGAAGGCGATCCGACATTCCTCGACGACGACGTCCAGGATGTC 5424 || |||||||| |||||||| | || ||| | ||||| ||||| | | |||| || Sbjct 7132 GGCGTCGTCGCTTTCCGCGAGGCCGCGGCGAACTACCTCGGTGACGATGCCGAGGAGATC 7073 Query 5425 GCCGAGTTCGGCGAGATCCCGGTGAGCGCCGGTC--GA-CTCGGCCTGCCGCGTGCCGCG 5481 ||||||| |||||||||||| || | ||| || || |||||| | | |||||| Sbjct 7072 GCCGAGTACGGCGAGATCCCCGT---CTCCGCTCCGGAGCTCGGCGCACTGAAGGCCGCG 7016 Query 5482 TACGCGACGAAGAAGGCTCTCGGCGTTCGCATCTCGAAGGAGATGATCGACGAGAACAAG 5541 | || | |||| | | | | |||||||| |||| | | ||||||||||| Sbjct 7015 TTCGGCATCAAGACCGGTGAGGCAATCCGCATCTCCTGGGAGCAGCGCAACGAGAACAAG 6956 Query 5542 ATCGACGCGGTGAACAAGCAG-ATCACCGGTCT-GCGCAACACCTTCGTCCGC 5592 ||||||||||| || |||| ||| |||||| | || ||| |||||||| Sbjct 6955 ATCGACGCGGT-CACCCGCAGCATCGACGGTCTCGAGC-GCACTGTCGTCCGC 6905 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 159048873537300