Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20nasuta_20[genbank_20GCA_5F002222885.1_202017-07-20] 46,105 sequences; 137,224,182 total letters Query= NC_030930.1 Length=46570 Score E Sequences producing significant alignments: (Bits) Value SEQ27525 98.7 3e-16 >SEQ27525 Length=13899 Score = 98.7 bits (108), Expect = 3e-16 Identities = 249/378 (66%), Gaps = 11/378 (3%) Strand=Plus/Minus Query 3777 GTCCGCATCAACAGCCCGGGCGGCGATGTCTACGACGGGATCGCGATCCTCAACGCCCTG 3836 ||||||||||||||||| || |||||||||||| | ||| | |||||| | ||||| ||| Sbjct 9142 GTCCGCATCAACAGCCCCGGTGGCGATGTCTACCAGGGGCTGGCGATCATGAACGCGCTG 9083 Query 3837 CGCAACCGCAAGTCG--ACGGTCACCACCTATGTCGACGGCATCGCGGCCNNNNNNNNNN 3894 || | | || | || ||||| ||| | || || ||||| || || Sbjct 9082 CG--ATCCCACGACGGCACGGTGACCGCGGTGGTGGAGGGCATGGCCGCATCGGCAGCAT 9025 Query 3895 NNNNNNNNNNNNT-GGCGG-GCACCGAG-GTGGTGATGATGCCGAACGCGGAGATGATGA 3951 | ||||| || | | ||||||||| || | ||||||| | |||| Sbjct 9024 CCTTCATCGCTGTCGGCGGCGCGTCCCGTGTGGTGATGCGCCCCACCGCGGAGCTAATGA 8965 Query 3952 TCCACGACCCGTGGATGGTCGCGATCGGCAACGCGAAAGATCTGCAGGAGGCCGTCGACA 4011 ||||||| || | ||| ||| ||||| || ||||| |||| |||| Sbjct 8964 TCCACGAAGCGATGTCTTTCGTCGGCGGGAACGCCGGGGAGATGCAGAAGGCGATCGAGG 8905 Query 4012 ACCTGATCCGCGTCTCAGACAACCTCGCGTCGG--TGTACGCCGACCGCACCGGCGGCTC 4069 | ||| ||| |||| | ||||| || ||| | || || || ||| | |||||| Sbjct 8904 ATCTGGACCGGATCTCTGCGAACCTGGC--CGGCATCTATGCGGAGCGCGCTGGCGGCGA 8847 Query 4070 GGCTGAGGAATGGCGCGCCGCGATGGCCGCCGAGACGTGGTACTCGGCCGAGGAGGCCGT 4129 | | ||| | ||||| | ||||||| || ||||||||||| ||||| |||||||||| Sbjct 8846 GCCGGAGCAGTGGCGTGACGCGATGAAGGCGGAGACGTGGTATTCGGCGCAGGAGGCCGT 8787 Query 4130 CACCGCTGGCCTCGCGGA 4147 || || ||||| || Sbjct 8786 GGATGCGGGGCTCGCTGA 8769 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 148820876401320