Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20nasuta_20[genbank_20GCA_5F002222885.1_202017-07-20] 46,105 sequences; 137,224,182 total letters Query= NC_030936.1 Length=93843 Score E Sequences producing significant alignments: (Bits) Value SEQ22413 163 2e-35 SEQ43844 154 9e-33 SEQ32968 145 5e-30 SEQ37149 93.3 3e-14 >SEQ22413 Length=7522 Score = 163 bits (180), Expect = 2e-35 Identities = 233/328 (71%), Gaps = 0/328 (0%) Strand=Plus/Minus Query 72316 ATCACCGTGATCGGAAACCTGACCGCCGATCCCGAACTGCGCTTCACCCCCTCGGGTGCG 72375 |||||| | |||| ||||| || || ||||| |||||| ||||||| ||||| Sbjct 3681 ATCACCATCGTCGGCAACCTCGTGGCGGACCCCGAGTTGCGCTACACCCCCAGCGGTGCC 3622 Query 72376 CCGGTCGCCAACTTCACCGTCGCAAGCACCCCCCGGTACTTCGACAAGCAGAGCAACGAG 72435 ||||| |||||||| || || ||| || || ||||||| |||| |||| || Sbjct 3621 GCGGTCACCAACTTCCGGGTGGCTTCCACACCGCGACGCTTCGACTCACAGACCAACCAG 3562 Query 72436 TGGAAGGACGCCGAGGCGCTCTTCCTGCGCTGCAACATCTGGCGCGAGCCGGCCGAGAAC 72495 ||| |||| |||||| | |||||| |||||||||||||||| | ||||||||| Sbjct 3561 TGGGTCGACGACGAGGCCTTGTTCCTGACCTGCAACATCTGGCGCACCGCCGCCGAGAAC 3502 Query 72496 GTCGCCGAGTCGCTGACCAAGGGCATGCGCGTCATCGTCCAGGGACGCCTCAAGCAGCGC 72555 |||||| | ||| ||||||| || || |||||| || || | || || Sbjct 3501 GTCGCCAACAGCCTGCACAAGGGCGACCGGGTGATCGTCACCGGCCGGTTGCGTCAACGG 3442 Query 72556 AGCTACGAGACGAAGGAAGGCGAGAACCGGACGGTCATCGAGCTCGAGGTCGAGGAGATC 72615 ||||||||| || || ||||| || || || ||||| | ||| ||| ||| || Sbjct 3441 TCCTACGAGACCCGCGAGGGTGAGAAGCGCACCGTGTTCGAGGTGGAGACCGACGAGGTC 3382 Query 72616 GGCCCCGCGCTGCGGTACGCCACCGCCC 72643 |||||| ||||||| ||||||||||||| Sbjct 3381 GGCCCCTCGCTGCGCTACGCCACCGCCC 3354 >SEQ43844 Length=619 Score = 154 bits (170), Expect = 9e-33 Identities = 235/335 (70%), Gaps = 0/335 (0%) Strand=Plus/Plus Query 72307 GACACCGTGATCACCGTGATCGGAAACCTGACCGCCGATCCCGAACTGCGCTTCACCCCC 72366 |||||| |||||| | |||| ||||| ||||| ||||||||||||| |||||| Sbjct 1 GACACCCCCATCACCATCGTCGGCAACCTCGTAGCCGACCCCGAACTGCGCTACACCCCG 60 Query 72367 TCGGGTGCGCCGGTCGCCAACTTCACCGTCGCAAGCACCCCCCGGTACTTCGACAAGCAG 72426 || || || | || |||| | |||||| ||||||||| ||| |||||||| Sbjct 61 TCCGGCGCCGCCGTGTGCAACGGCCGTGTCGCATCCACCCCCCGCACGTTCAACAAGCAG 120 Query 72427 AGCAACGAGTGGAAGGACGCCGAGGCGCTCTTCCTGCGCTGCAACATCTGGCGCGAGCCG 72486 | |||| ||||| |||| ||||| || || ||||| || |||| | |||||| || | Sbjct 121 ACCAACCAGTGGGAGGATGCCGAAGCACTGTTCCTCACCTTCAACCTGTGGCGCCAGGCA 180 Query 72487 GCCGAGAACGTCGCCGAGTCGCTGACCAAGGGCATGCGCGTCATCGTCCAGGGACGCCTC 72546 || |||||||| || | ||| |||||| || || |||||| || ||| Sbjct 181 GCGGAGAACGTGGCGAACAGCCTGCACAAGGGTGACCGGGTGATCGTCGTCGGCAATCTC 240 Query 72547 AAGCAGCGCAGCTACGAGACGAAGGAAGGCGAGAACCGGACGGTCATCGAGCTCGAGGTC 72606 ||||| ||||||| ||||| ||||| | || || || |||| |||||| Sbjct 241 CGCCAGCGGTCCTACGAGTCGAAGACCGGCGACACGCGCACCGTGTACGAGATCGAGGCG 300 Query 72607 GAGGAGATCGGCCCCGCGCTGCGGTACGCCACCGC 72641 || ||| ||||||| | || |||||||||||||| Sbjct 301 GACGAGGTCGGCCCTTCCCTCCGGTACGCCACCGC 335 >SEQ32968 Length=2597 Score = 145 bits (160), Expect = 5e-30 Identities = 233/335 (70%), Gaps = 0/335 (0%) Strand=Plus/Minus Query 72307 GACACCGTGATCACCGTGATCGGAAACCTGACCGCCGATCCCGAACTGCGCTTCACCCCC 72366 || ||| |||||| || |||| ||||| || || || || | | ||| ||| Sbjct 2188 GATACCCAGATCACTGTCGTCGGCAACCTCGTTGCTGACGTTGACCTTAGGTACACGCCC 2129 Query 72367 TCGGGTGCGCCGGTCGCCAACTTCACCGTCGCAAGCACCCCCCGGTACTTCGACAAGCAG 72426 || ||| ||||||| |||||| |||||| || ||||| |||||| | || Sbjct 2128 AGTGGCGCGGCGGTCGCGAACTTCCGCGTCGCGTCAACGCCCCGTCGGTTCGACTCGAAG 2069 Query 72427 AGCAACGAGTGGAAGGACGCCGAGGCGCTCTTCCTGCGCTGCAACATCTGGCGCGAGCCG 72486 ||| ||||| |||| ||||| || ||||| |||||||| |||||||| || | Sbjct 2068 TCGAACCAGTGGGTCGACGGGGAGGCACTGTTCCTCAGCTGCAACGTCTGGCGCCAGGCC 2009 Query 72487 GCCGAGAACGTCGCCGAGTCGCTGACCAAGGGCATGCGCGTCATCGTCCAGGGACGCCTC 72546 |||||||||||||| | || ||| |||||| ||||| |||||| || || || Sbjct 2008 GCCGAGAACGTCGCGAACTCCCTGCACAAGGGGGACCGCGTGATCGTCTCCGGCCGGCTG 1949 Query 72547 AAGCAGCGCAGCTACGAGACGAAGGAAGGCGAGAACCGGACGGTCATCGAGCTCGAGGTC 72606 ||||| |||||| || || || ||||| || || || ||||| | |||||| Sbjct 1948 CGCCAGCGGTCCTACGAAACCCGTGAGGGTGAGAAGCGCACCGTGTTCGAGGTGGAGGTC 1889 Query 72607 GAGGAGATCGGCCCCGCGCTGCGGTACGCCACCGC 72641 || ||| ||||||| | || |||||||||||||| Sbjct 1888 GACGAGGTCGGCCCGTCTCTCCGGTACGCCACCGC 1854 >SEQ37149 Length=713 Score = 93.3 bits (102), Expect = 3e-14 Identities = 161/232 (69%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 43246 GCCATCGAGGAGTTCGACGCGGACCCGGGCGTGGACGTCATCATCCTGGCCCGCGGCGGC 43305 ||| |||| || | || ||||| || | || |||||||||||| | |||||||||||| Sbjct 446 GCCCTCGATCAGCTGGAAGCGGATCCCCGGGTCGACGTCATCATCGTCGCCCGCGGCGGC 505 Query 43306 GGCTCGAAGGAAGACCTCCTCCCGTGGTCCGACGAGGCTCTGGTTCGCGCCGCGTTCG-- 43363 |||||| ||| |||||||| || | ||||| ||| | || || || | ||| || Sbjct 506 GGCTCGGTGGAGGACCTCCTGCCCTTTTCCGAGGAGACACTCGT--CCGGCACGTCCGCA 563 Query 43364 CGTCTGCAACCCCGGTTGTGTCTGCGATTGGCCACGAGAATGATCGGCCGCTCCTCGACC 43423 || | || ||||| || ||| || || || || || ||| |||||||| Sbjct 564 CGATGACGACTCCGGTCGTCAGTGCCATCGGACAAGAACCGGACACCCCGGTCCTCGACA 623 Query 43424 GCGTTGTGGACCTTCGAGCGGCAACTCCGACGGATGCAGCGAAACGTGTCGT 43475 || | || || || || || || || ||||| || ||||| |||||||| Sbjct 624 ATGTCGCCGATCTGCGGGCCGCGACGCCCACGGACGCCGCGAAGCGTGTCGT 675 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 300004131496620