Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20nasuta_20[genbank_20GCA_5F002222885.1_202017-07-20]
46,105 sequences; 137,224,182 total letters
Query= NC_030936.1
Length=93843
Score E
Sequences producing significant alignments: (Bits) Value
SEQ22413 163 2e-35
SEQ43844 154 9e-33
SEQ32968 145 5e-30
SEQ37149 93.3 3e-14
>SEQ22413
Length=7522
Score = 163 bits (180), Expect = 2e-35
Identities = 233/328 (71%), Gaps = 0/328 (0%)
Strand=Plus/Minus
Query 72316 ATCACCGTGATCGGAAACCTGACCGCCGATCCCGAACTGCGCTTCACCCCCTCGGGTGCG 72375
|||||| | |||| ||||| || || ||||| |||||| ||||||| |||||
Sbjct 3681 ATCACCATCGTCGGCAACCTCGTGGCGGACCCCGAGTTGCGCTACACCCCCAGCGGTGCC 3622
Query 72376 CCGGTCGCCAACTTCACCGTCGCAAGCACCCCCCGGTACTTCGACAAGCAGAGCAACGAG 72435
||||| |||||||| || || ||| || || ||||||| |||| |||| ||
Sbjct 3621 GCGGTCACCAACTTCCGGGTGGCTTCCACACCGCGACGCTTCGACTCACAGACCAACCAG 3562
Query 72436 TGGAAGGACGCCGAGGCGCTCTTCCTGCGCTGCAACATCTGGCGCGAGCCGGCCGAGAAC 72495
||| |||| |||||| | |||||| |||||||||||||||| | |||||||||
Sbjct 3561 TGGGTCGACGACGAGGCCTTGTTCCTGACCTGCAACATCTGGCGCACCGCCGCCGAGAAC 3502
Query 72496 GTCGCCGAGTCGCTGACCAAGGGCATGCGCGTCATCGTCCAGGGACGCCTCAAGCAGCGC 72555
|||||| | ||| ||||||| || || |||||| || || | || ||
Sbjct 3501 GTCGCCAACAGCCTGCACAAGGGCGACCGGGTGATCGTCACCGGCCGGTTGCGTCAACGG 3442
Query 72556 AGCTACGAGACGAAGGAAGGCGAGAACCGGACGGTCATCGAGCTCGAGGTCGAGGAGATC 72615
||||||||| || || ||||| || || || ||||| | ||| ||| ||| ||
Sbjct 3441 TCCTACGAGACCCGCGAGGGTGAGAAGCGCACCGTGTTCGAGGTGGAGACCGACGAGGTC 3382
Query 72616 GGCCCCGCGCTGCGGTACGCCACCGCCC 72643
|||||| ||||||| |||||||||||||
Sbjct 3381 GGCCCCTCGCTGCGCTACGCCACCGCCC 3354
>SEQ43844
Length=619
Score = 154 bits (170), Expect = 9e-33
Identities = 235/335 (70%), Gaps = 0/335 (0%)
Strand=Plus/Plus
Query 72307 GACACCGTGATCACCGTGATCGGAAACCTGACCGCCGATCCCGAACTGCGCTTCACCCCC 72366
|||||| |||||| | |||| ||||| ||||| ||||||||||||| ||||||
Sbjct 1 GACACCCCCATCACCATCGTCGGCAACCTCGTAGCCGACCCCGAACTGCGCTACACCCCG 60
Query 72367 TCGGGTGCGCCGGTCGCCAACTTCACCGTCGCAAGCACCCCCCGGTACTTCGACAAGCAG 72426
|| || || | || |||| | |||||| ||||||||| ||| ||||||||
Sbjct 61 TCCGGCGCCGCCGTGTGCAACGGCCGTGTCGCATCCACCCCCCGCACGTTCAACAAGCAG 120
Query 72427 AGCAACGAGTGGAAGGACGCCGAGGCGCTCTTCCTGCGCTGCAACATCTGGCGCGAGCCG 72486
| |||| ||||| |||| ||||| || || ||||| || |||| | |||||| || |
Sbjct 121 ACCAACCAGTGGGAGGATGCCGAAGCACTGTTCCTCACCTTCAACCTGTGGCGCCAGGCA 180
Query 72487 GCCGAGAACGTCGCCGAGTCGCTGACCAAGGGCATGCGCGTCATCGTCCAGGGACGCCTC 72546
|| |||||||| || | ||| |||||| || || |||||| || |||
Sbjct 181 GCGGAGAACGTGGCGAACAGCCTGCACAAGGGTGACCGGGTGATCGTCGTCGGCAATCTC 240
Query 72547 AAGCAGCGCAGCTACGAGACGAAGGAAGGCGAGAACCGGACGGTCATCGAGCTCGAGGTC 72606
||||| ||||||| ||||| ||||| | || || || |||| ||||||
Sbjct 241 CGCCAGCGGTCCTACGAGTCGAAGACCGGCGACACGCGCACCGTGTACGAGATCGAGGCG 300
Query 72607 GAGGAGATCGGCCCCGCGCTGCGGTACGCCACCGC 72641
|| ||| ||||||| | || ||||||||||||||
Sbjct 301 GACGAGGTCGGCCCTTCCCTCCGGTACGCCACCGC 335
>SEQ32968
Length=2597
Score = 145 bits (160), Expect = 5e-30
Identities = 233/335 (70%), Gaps = 0/335 (0%)
Strand=Plus/Minus
Query 72307 GACACCGTGATCACCGTGATCGGAAACCTGACCGCCGATCCCGAACTGCGCTTCACCCCC 72366
|| ||| |||||| || |||| ||||| || || || || | | ||| |||
Sbjct 2188 GATACCCAGATCACTGTCGTCGGCAACCTCGTTGCTGACGTTGACCTTAGGTACACGCCC 2129
Query 72367 TCGGGTGCGCCGGTCGCCAACTTCACCGTCGCAAGCACCCCCCGGTACTTCGACAAGCAG 72426
|| ||| ||||||| |||||| |||||| || ||||| |||||| | ||
Sbjct 2128 AGTGGCGCGGCGGTCGCGAACTTCCGCGTCGCGTCAACGCCCCGTCGGTTCGACTCGAAG 2069
Query 72427 AGCAACGAGTGGAAGGACGCCGAGGCGCTCTTCCTGCGCTGCAACATCTGGCGCGAGCCG 72486
||| ||||| |||| ||||| || ||||| |||||||| |||||||| || |
Sbjct 2068 TCGAACCAGTGGGTCGACGGGGAGGCACTGTTCCTCAGCTGCAACGTCTGGCGCCAGGCC 2009
Query 72487 GCCGAGAACGTCGCCGAGTCGCTGACCAAGGGCATGCGCGTCATCGTCCAGGGACGCCTC 72546
|||||||||||||| | || ||| |||||| ||||| |||||| || || ||
Sbjct 2008 GCCGAGAACGTCGCGAACTCCCTGCACAAGGGGGACCGCGTGATCGTCTCCGGCCGGCTG 1949
Query 72547 AAGCAGCGCAGCTACGAGACGAAGGAAGGCGAGAACCGGACGGTCATCGAGCTCGAGGTC 72606
||||| |||||| || || || ||||| || || || ||||| | ||||||
Sbjct 1948 CGCCAGCGGTCCTACGAAACCCGTGAGGGTGAGAAGCGCACCGTGTTCGAGGTGGAGGTC 1889
Query 72607 GAGGAGATCGGCCCCGCGCTGCGGTACGCCACCGC 72641
|| ||| ||||||| | || ||||||||||||||
Sbjct 1888 GACGAGGTCGGCCCGTCTCTCCGGTACGCCACCGC 1854
>SEQ37149
Length=713
Score = 93.3 bits (102), Expect = 3e-14
Identities = 161/232 (69%), Gaps = 4/232 (2%)
Strand=Plus/Plus
Query 43246 GCCATCGAGGAGTTCGACGCGGACCCGGGCGTGGACGTCATCATCCTGGCCCGCGGCGGC 43305
||| |||| || | || ||||| || | || |||||||||||| | ||||||||||||
Sbjct 446 GCCCTCGATCAGCTGGAAGCGGATCCCCGGGTCGACGTCATCATCGTCGCCCGCGGCGGC 505
Query 43306 GGCTCGAAGGAAGACCTCCTCCCGTGGTCCGACGAGGCTCTGGTTCGCGCCGCGTTCG-- 43363
|||||| ||| |||||||| || | ||||| ||| | || || || | ||| ||
Sbjct 506 GGCTCGGTGGAGGACCTCCTGCCCTTTTCCGAGGAGACACTCGT--CCGGCACGTCCGCA 563
Query 43364 CGTCTGCAACCCCGGTTGTGTCTGCGATTGGCCACGAGAATGATCGGCCGCTCCTCGACC 43423
|| | || ||||| || ||| || || || || || ||| ||||||||
Sbjct 564 CGATGACGACTCCGGTCGTCAGTGCCATCGGACAAGAACCGGACACCCCGGTCCTCGACA 623
Query 43424 GCGTTGTGGACCTTCGAGCGGCAACTCCGACGGATGCAGCGAAACGTGTCGT 43475
|| | || || || || || || || ||||| || ||||| ||||||||
Sbjct 624 ATGTCGCCGATCTGCGGGCCGCGACGCCCACGGACGCCGCGAAGCGTGTCGT 675
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 300004131496620
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |