Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20nasuta_20[genbank_20GCA_5F002222885.1_202017-07-20] 46,105 sequences; 137,224,182 total letters Query= NC_030942.1 Length=55524 Score E Sequences producing significant alignments: (Bits) Value seq1762 268 3e-67 SEQ18518 93.3 1e-14 SEQ26880 91.5 5e-14 >seq1762 Length=3526 Score = 268 bits (296), Expect = 3e-67 Identities = 563/829 (68%), Gaps = 18/829 (2%) Strand=Plus/Plus Query 11320 GGCCCGCGAACTGGGCACCGACA--GCCAGCTGGCGGCGACGTCATCGACCGACGCCGCG 11377 |||||| ||||| |||| ||||| ||| || | || || || | |||||||||| Sbjct 1212 GGCCCGTGAACTCGGCAACGACACTGCC--CTCACAGCCACCTCCGCCTCCGACGCCGCA 1269 Query 11378 AACGCAATGCTCGAACTGGCCAAGGGCGGGTTCACTGTTCAGCAGTCGATGCAGGCCGCG 11437 || ||| ||| ||| |||||||||| ||| | || | |||||||| || || Sbjct 1270 GCTGCCATGGCCGAGCTGTCCAAGGGCGGCTTCTCCGTCGACGAGTCGATGGGAGCGGCC 1329 Query 11438 CGCGGAACCCTGCAGCTCGCGGCAGCGGCTCAGATCTCGGCGGCCGACGCCGCCACGATC 11497 ||||| ||||||||||| || || || |||||| |||||| ||||| |||||||| Sbjct 1330 AAGGGAACGCTGCAGCTCGCCGCCGCAGCACAGATCGAGGCGGCTGACGCGGCCACGATT 1389 Query 11498 CAGTCGCAGGCACTGCAGGCCTTTGGCAAGAACGCCGACTACGCAGGGAAGACGGCCGAC 11557 ||||||||||| |||||||| || | | | || | |||| | | | ||||| Sbjct 1390 CAGTCGCAGGCGCTGCAGGCTTTCTCCCTGCAGGCTGGTGACGCGGCCCGGGTGTCCGAC 1449 Query 11558 ATCCTCGCGAACGCTGCGAACGCGTCGTCCGCTGAGATCACCGACGTCGCGCAGGCGTTG 11617 || ||||| || |||||||| || ||||| |||||| | | |||| |||| || Sbjct 1450 ATTCTCGCAGGTGCGGCGAACGCCTCATCCGCCGAGATCGAGGGCATCGCCCAGGGCCTG 1509 Query 11618 CAACAGTCCGGCACTGTGGCCAACCAGTTCGGCCTCTCGATGTCGGACACCGCGGCGTCG 11677 || ||| |||| || ||||| |||||||||||| || || |||||| | || | Sbjct 1510 CAGCAGGCCGGAACCGTGGCGAACCAGTTCGGCATCAGCATCGAGGACACTTCCACGGCC 1569 Query 11678 ATCGCGCTCTTGGCCAACGCCGGCATCAAGGGTTCCGACGCCGGAACGCTGCTGAAGTCA 11737 |||| | || |||||||| |||||| |||| || ||||| || |||||||| ||||| Sbjct 1570 CTCGCAATGTTCGCCAACGCGGGCATCCAGGGCTCTGACGCGGGCACGCTGCTCAAGTCC 1629 Query 11738 ACGCTCCTCGCGCTCACCGATCAGAGCGACCAGGCCGAGACGGTGATGAAACAGCTCGGC 11797 | || || ||||| || || ||| || | | || || ||| |||| | | |||||| Sbjct 1630 GCACTGCTGGCGCTGACGGACCAGGGCAAGCCCGCGCAGGCGGCGATGGAGGAACTCGGC 1689 Query 11798 CTCACCGTCTACGACTCGTCCGGCCGTTTCGTGGGCATGGAGTCGCTGTTCGGGCAGCTG 11857 || | || |||||| | ||| ||||| || | | | || |||| |||||| Sbjct 1690 CTGTCGGTGTACGACATGCAGGGCAACTTCGTTGGACTACCGGCACTCTTCGACCAGCTG 1749 Query 11858 AACGCCGCGTCTGAA-CGGATGACAGACCAGCAGTACCAGCAAGCGACCGCGATCCTGTT 11916 | | ||| | ||| || ||||| || ||| ||| || ||||| | || || Sbjct 1750 CAGGATGCG-CAGAAGCGCATGACGCCGGAGGCGTATCAGGCGGCCACCGCCGTGCTCTT 1808 Query 11917 CGGCAGCGATGCGATGCGCCTGTCGGGACTGGCCGC---GCAGGTCGGCGCTGACGGGTT 11973 |||| || || ||||||||| | || | | ||| ||||| || || || || || Sbjct 1809 CGGCTCTGACGCCATGCGCCTGGCCGGCATCGGCGCGGAGCAGG--GGAGC-GAGGGCTT 1865 Query 11974 CACGCAGATG--CGTGC-GGCCATGGAGAAGAACGGGTCTGCGGCCGAGGTCGCCGCCGC 12030 || || || | || || || | |||| ||||| |||||||| || || Sbjct 1866 CAACAAGCTGAAGGAGCAGGTCA---CCCGGTCCGGGCAGGCGGCAGAGGTCGCGGCAGC 1922 Query 12031 GAAGATGCAAGGTCTCCCCGGGGCGTGGGAACGGCTGAAGAACTCCGCCCAGGACGCGGG 12090 ||| || || || ||||| ||| ||| ||| | ||||| ||||| |||| || Sbjct 1923 CCAGACCCAGGGCCTTCCCGGAGCGCTGGAGCGGGCGCAGAACGCCGCCGAGGATCTCGG 1982 Query 12091 CCTCGCGTTCTATGACGCCGTCGACGGACCGCTCACCGCCGCCGCCAAC 12139 || | |||| ||||| || | || ||||| |||| |||||| ||| Sbjct 1983 TCTGAAGATCTACGACGCGGTGAAGGGGCCGCTGACCGACGCCGCGAAC 2031 >SEQ18518 Length=6842 Score = 93.3 bits (102), Expect = 1e-14 Identities = 111/151 (74%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 42845 GTTCTTCCCTGAGAAGGGTGGATCGACCGCAGAAGCCAAAACGATCTGCGCCGGGTGTGA 42904 ||||||||| |||||||| ||||||||| || || || ||||||| || || | Sbjct 369 GTTCTTCCCGGAGAAGGGCGGATCGACCCGGGAGGCGAAGCGGATCTGCCGCGCATGCGG 428 Query 42905 TGTGCGCGAACAGTGCCTGGAATGGGCGCTCGAGAACCAAGAACGGTTCGGGATCTTCGG 42964 || ||||| ||||||| || | || |||||| || | || ||||||||||||| || Sbjct 429 GGTCCGCGACGAGTGCCTCGAGTACGCACTCGAGCACGATGAGCGGTTCGGGATCTGGGG 488 Query 42965 GGGCAAGTCGGAGCGTGAACGCCGCCGTATC 42995 || ||| ||||| || || |||||| || Sbjct 489 CGGACTGTCCGAGCGCGAGCGTCGCCGTCTC 519 >SEQ26880 Length=5820 Score = 91.5 bits (100), Expect = 5e-14 Identities = 70/83 (84%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 15230 CGTTTCGGCTGGGTCAACGGCGGGCCCGGAGGCGGGCACACCGCCGGCACACTCCCGGAC 15289 ||| | |||||| | ||||| || || |||||||| ||||| ||||||| || |||||| Sbjct 2402 CGTATTGGCTGGATGAACGGGGGTCCGGGAGGCGGCCACACTTCCGGCACCCTGCCGGAC 2343 Query 15290 GGCACCAACGTCGAGATGGGCGG 15312 ||||||||||| ||||||||||| Sbjct 2342 GGCACCAACGTGGAGATGGGCGG 2320 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 177457989082860