Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20nasuta_20[genbank_20GCA_5F002222885.1_202017-07-20]
46,105 sequences; 137,224,182 total letters
Query= NC_030943.1
Length=54990
Score E
Sequences producing significant alignments: (Bits) Value
SEQ27525 125 3e-24
SEQ44338 91.5 5e-14
>SEQ27525
Length=13899
Score = 125 bits (138), Expect = 3e-24
Identities = 183/257 (71%), Gaps = 9/257 (4%)
Strand=Plus/Minus
Query 2877 GCGATCGCCTACCACGACAACATGATCGCGATCGCCGGTCTCGCGCACTTCCTCAACCTC 2936
|||||||||||||||||| ||||| |||| || | || ||||||||||| |||||
Sbjct 9806 GCGATCGCCTACCACGACTCGATGATGGCGAAGGCGGTGCTGGCGCACTTCCTGAACCTT 9747
Query 2937 GAGGGCGGCGGCGGGTCGTACGCGCTGGC---GAGCGTGCAGGAACACACCTTCACCCAG 2993
|||||| ||||| || ||||| ||||| || | | ||| | |||| ||||
Sbjct 9746 GAGGGCAAGGGCGGCTCCTACGCCCTGGCGGAGACCCAGTCGGATC---TGTTCATCCAG 9690
Query 2994 TCGGTGCAGACGACCGCCGAATGGATCCGCGACACCGCGACGGCCCACATCGTCGAGGAC 3053
||| ||||||| | ||| || ||||| |||||||| || |||||||| || |||
Sbjct 9689 TCGCTGCAGACCATCGCGGACTGGATAGCGGACACCGCCACCCAGCACATCGTGGAAGAC 9630
Query 3054 CTCGTCGACATCAACTT---CGGCGTCGACGAACCGTCACCGCGGATCGTGTTCGACGAG 3110
||||| |||||| || ||| || | | | |||||||||||| ||||| |
Sbjct 9629 CTCGTTGACATCGCTTTCCCCGGATATGAGGGGGTGGCGCCGCGGATCGTGGTCGACCCG 9570
Query 3111 ATCGGCAGCCGGCAGGA 3127
|||| |||| | ||||
Sbjct 9569 ATCGCCAGCAAGAAGGA 9553
Score = 120 bits (132), Expect = 1e-22
Identities = 261/386 (68%), Gaps = 11/386 (3%)
Strand=Plus/Minus
Query 3602 GTGCGGATCAACTCTCCCGGCGGCGACGTCTACGACGCGATCGCCATCACCAACGCGCTG 3661
|| || |||||| ||||| ||||| |||||| | | | | || |||| |||||||||
Sbjct 9142 GTCCGCATCAACAGCCCCGGTGGCGATGTCTACCAGGGGCTGGCGATCATGAACGCGCTG 9083
Query 3662 CGCAACCACGACGCGACGATCACCGTCCAGGTCGACGGCCTCGCCGCGTCGGCGGCGAGC 3721
|| |||||||| ||| | |||| ||| || ||| | ||||| ||||| || |
Sbjct 9082 CGATCCCACGACGGCACGGTGACCGCGGTGGTGGAGGGCATGGCCGCATCGGCAGCATCC 9023
Query 3722 TTCATCGCGATGGCCGGCG---ACGAGGTGGTGATGTGCCGCAACACCGAGATGATGATC 3778
|||||||| | | ||||| | ||||||||| ||| || | | ||| | ||||||
Sbjct 9022 TTCATCGCTGTCGGCGGCGCGTCCCGTGTGGTGATGCGCCCCACCGCGGAGCTAATGATC 8963
Query 3779 CACGACGCCCGCGGATTCTGCATCGGCAACGCCACCGACATGGCCGAGTACG-CCGAGTG 3837
||||| || ||| | ||| |||||| || || || || || ||||
Sbjct 8962 CACGAAGCGATGTCTTTCGTCGGCGGGAACGCCGGGGAGAT-GCAGAAGGCGATCGAGGA 8904
Query 3838 GCTCGGCCGCGCGAGC---GACAACATCGCCTCGATGTACGCCGAGAAGACCGGCGGCGA 3894
|| | ||| || | | ||| | ||| || || || ||| | ||||||||
Sbjct 8903 TCTGGACCG---GATCTCTGCGAACCTGGCCGGCATCTATGCGGAGCGCGCTGGCGGCGA 8847
Query 3895 GGTGAAGGACTGGCGCAAGGCGATGACGGCCGAGACCTGGTACACGGCTGAGGAAGCCGT 3954
| | || | ||||| | ||||||| ||| ||||| ||||| |||| |||| |||||
Sbjct 8846 GCCGGAGCAGTGGCGTGACGCGATGAAGGCGGAGACGTGGTATTCGGCGCAGGAGGCCGT 8787
Query 3955 CGAGGCGGGGCTCGCCGACAAGGTGG 3980
|| ||||||||||| ||| |||||
Sbjct 8786 GGATGCGGGGCTCGCTGACGCGGTGG 8761
>SEQ44338
Length=826
Score = 91.5 bits (100), Expect = 5e-14
Identities = 483/758 (64%), Gaps = 49/758 (6%)
Strand=Plus/Plus
Query 53219 CCCATGTTCAGGGCGTCGAGGGCGAGGTCGGTGTGCATGGTGGTCGAGACCTGCCAGCCG 53278
|||||| ||||||| || ||| || |||||| || || |||| ||||||||
Sbjct 69 CCCATGGTCAGGGCATCTTTGGCCAGTCCGGTGTACAGGGACCGCGAGCATTGCCAGCCA 128
Query 53279 ACGACCATCCGCGAGAACACGTCCAGGACGAACGCCGCGTACACCCAGCCCGAGTGGGTG 53338
|||| | || || |||||||| ||| || || | |||||||||||| ||| ||
Sbjct 129 ACGATCCGGCGGGAAAACACGTCGGTGACAAAGGCGGTGTACACCCAGCCGGAGAACGTT 188
Query 53339 CGGATGTAGGTCAGGTCCGCCACCCACAACGCGTTCGGTGCCGCCGC-GGTGAACTGACG 53397
| | ||| || | |||||| ||||||||| || | || | | || || || || ||
Sbjct 189 CTCACGTAAGTGATGTCCGCGACCCACAAC-CGGTTGGGCCAGTAGCTGGCAAAGTGCCG 247
Query 53398 GTTGACCCGGTCAGCCGGCCGGGGTGTTTCAGCTCCC-----TCGCTGCGCGTGGTCTTG 53452
||||||| |||| | ||||| ||| ||||| || ||| || || ||
Sbjct 248 GTTGACCAGGTC-----GGCGGGGCATTT---CTCCCGTGGGGCGGAGCGGGTCGTGTT- 298
Query 53453 CGTGTCTTGAGTCTCG--CTATCCCTTGCAGCCCATCGGCTTT---CATCAATCGCTCGA 53507
|| ||| | | || | ||||| ||||| | ||||||| ||| | || |||||
Sbjct 299 CGGCGCTTTTG-CCCGTACGATCCCGTGCAGGC---CGGCTTTGCGCATGAGTCTCTCGA 354
Query 53508 CGGTGCAGCGGGCAGCACTATGGC-CCTGTCTGCG------CAATTGGG-----CATGCA 53555
|||||||||||| || | | || || || | | ||| | | ||
Sbjct 355 TGGTGCAGCGGGCTACATGACCCCGCCGGTGTGGGTCGTGCCGGTTGAGGACAACCCACA 414
Query 53556 CCTTGCGGGCACCGTAGACGCCGAGGTTGTCGGCATGCACCGCGCGGA---CCTGGGTAA 53612
||| | ||| |||||| || || ||| | ||||| | | || ||| |||
Sbjct 415 TCTTCCTGGCGCCGTAGGCGTCGTAGTTCGCTTTGTGCACGGTGGTGATCTCCTCGGT-- 472
Query 53613 GGAGCTCCCGGTCACGCACCACACGAGGCGCCTCGGTCTTCTGGGGGCTCAGGTGGGCTC 53672
||| ||| ||| |||| | || ||| | ||| ||||| | ||| ||
Sbjct 473 -GAGTTCCTCGTCGCGCAGCCTGCG-GGCTGAT-GGTGGTCTGG----TTGTGTGTGCGT 525
Query 53673 GTACCGTGGACGGAGCGATCTGGGCGGACGTATCGCGCAATGCCGCACAGATCGGATCGA 53732
| || ||||| ||||||| | | ||||| ||| |||||||| ||||
Sbjct 526 AGAAGGTCGACGGGGCGATCTTCACACCGGCGCTGCGCAGCGCCCGGCAGATCGGCTCGA 585
Query 53733 CTCCGTGTTCATCGCGGTGAGCCGCGACGAACTCCACGATCAGCGCTGTGGGCGGTCGAT 53792
| |||| || || ||| | ||| | | | ||||||||| ||||||||||
Sbjct 586 CCCCGTAGTCGTCCTTGTGCGAGTCGATGTAGTTGCAGATCAGCGCAAGGGGCGGTCGAG 645
Query 53793 CTCCGCCGCAAAGAAAGCCGAAGCCTGCTTCAAGATCGTGTTCGCTCGCCGCAGTTCACG 53852
||||||||| || |||||||| || || | |||| ||| || || ||||| || ||
Sbjct 646 CTCCGCCGCGAAAAAAGCCGATGCGGATTTGAGGATCTCGTTGGCCCGGCGCAGCTCCCG 705
Query 53853 GTTCTCCCGCTCCAACGCCGCGATGCGGTCAGCGTCCTCACTCGTGGTGCCCGGGCGGAC 53912
|| ||| |||| || ||| ||||| | ||| || | |||| || || ||| |
Sbjct 706 GTGCTCTTTTTCCAGGGCGCGGATCCGGTCGGTGTCGTCGGTGGTGGCCCCGGGCCGGTC 765
Query 53913 CCCGCCGTCGATCTCGGCCTGACGAACCCAATTGCGCA 53950
||| |||||| |||| | || | |||| |||||
Sbjct 766 ACCGGTGTCGATTTCGGTGCGGCGGATCCAACCGCGCA 803
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 175750124645520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |