Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20nasuta_20[genbank_20GCA_5F002222885.1_202017-07-20] 46,105 sequences; 137,224,182 total letters Query= NC_030943.1 Length=54990 Score E Sequences producing significant alignments: (Bits) Value SEQ27525 125 3e-24 SEQ44338 91.5 5e-14 >SEQ27525 Length=13899 Score = 125 bits (138), Expect = 3e-24 Identities = 183/257 (71%), Gaps = 9/257 (4%) Strand=Plus/Minus Query 2877 GCGATCGCCTACCACGACAACATGATCGCGATCGCCGGTCTCGCGCACTTCCTCAACCTC 2936 |||||||||||||||||| ||||| |||| || | || ||||||||||| ||||| Sbjct 9806 GCGATCGCCTACCACGACTCGATGATGGCGAAGGCGGTGCTGGCGCACTTCCTGAACCTT 9747 Query 2937 GAGGGCGGCGGCGGGTCGTACGCGCTGGC---GAGCGTGCAGGAACACACCTTCACCCAG 2993 |||||| ||||| || ||||| ||||| || | | ||| | |||| |||| Sbjct 9746 GAGGGCAAGGGCGGCTCCTACGCCCTGGCGGAGACCCAGTCGGATC---TGTTCATCCAG 9690 Query 2994 TCGGTGCAGACGACCGCCGAATGGATCCGCGACACCGCGACGGCCCACATCGTCGAGGAC 3053 ||| ||||||| | ||| || ||||| |||||||| || |||||||| || ||| Sbjct 9689 TCGCTGCAGACCATCGCGGACTGGATAGCGGACACCGCCACCCAGCACATCGTGGAAGAC 9630 Query 3054 CTCGTCGACATCAACTT---CGGCGTCGACGAACCGTCACCGCGGATCGTGTTCGACGAG 3110 ||||| |||||| || ||| || | | | |||||||||||| ||||| | Sbjct 9629 CTCGTTGACATCGCTTTCCCCGGATATGAGGGGGTGGCGCCGCGGATCGTGGTCGACCCG 9570 Query 3111 ATCGGCAGCCGGCAGGA 3127 |||| |||| | |||| Sbjct 9569 ATCGCCAGCAAGAAGGA 9553 Score = 120 bits (132), Expect = 1e-22 Identities = 261/386 (68%), Gaps = 11/386 (3%) Strand=Plus/Minus Query 3602 GTGCGGATCAACTCTCCCGGCGGCGACGTCTACGACGCGATCGCCATCACCAACGCGCTG 3661 || || |||||| ||||| ||||| |||||| | | | | || |||| ||||||||| Sbjct 9142 GTCCGCATCAACAGCCCCGGTGGCGATGTCTACCAGGGGCTGGCGATCATGAACGCGCTG 9083 Query 3662 CGCAACCACGACGCGACGATCACCGTCCAGGTCGACGGCCTCGCCGCGTCGGCGGCGAGC 3721 || |||||||| ||| | |||| ||| || ||| | ||||| ||||| || | Sbjct 9082 CGATCCCACGACGGCACGGTGACCGCGGTGGTGGAGGGCATGGCCGCATCGGCAGCATCC 9023 Query 3722 TTCATCGCGATGGCCGGCG---ACGAGGTGGTGATGTGCCGCAACACCGAGATGATGATC 3778 |||||||| | | ||||| | ||||||||| ||| || | | ||| | |||||| Sbjct 9022 TTCATCGCTGTCGGCGGCGCGTCCCGTGTGGTGATGCGCCCCACCGCGGAGCTAATGATC 8963 Query 3779 CACGACGCCCGCGGATTCTGCATCGGCAACGCCACCGACATGGCCGAGTACG-CCGAGTG 3837 ||||| || ||| | ||| |||||| || || || || || |||| Sbjct 8962 CACGAAGCGATGTCTTTCGTCGGCGGGAACGCCGGGGAGAT-GCAGAAGGCGATCGAGGA 8904 Query 3838 GCTCGGCCGCGCGAGC---GACAACATCGCCTCGATGTACGCCGAGAAGACCGGCGGCGA 3894 || | ||| || | | ||| | ||| || || || ||| | |||||||| Sbjct 8903 TCTGGACCG---GATCTCTGCGAACCTGGCCGGCATCTATGCGGAGCGCGCTGGCGGCGA 8847 Query 3895 GGTGAAGGACTGGCGCAAGGCGATGACGGCCGAGACCTGGTACACGGCTGAGGAAGCCGT 3954 | | || | ||||| | ||||||| ||| ||||| ||||| |||| |||| ||||| Sbjct 8846 GCCGGAGCAGTGGCGTGACGCGATGAAGGCGGAGACGTGGTATTCGGCGCAGGAGGCCGT 8787 Query 3955 CGAGGCGGGGCTCGCCGACAAGGTGG 3980 || ||||||||||| ||| ||||| Sbjct 8786 GGATGCGGGGCTCGCTGACGCGGTGG 8761 >SEQ44338 Length=826 Score = 91.5 bits (100), Expect = 5e-14 Identities = 483/758 (64%), Gaps = 49/758 (6%) Strand=Plus/Plus Query 53219 CCCATGTTCAGGGCGTCGAGGGCGAGGTCGGTGTGCATGGTGGTCGAGACCTGCCAGCCG 53278 |||||| ||||||| || ||| || |||||| || || |||| |||||||| Sbjct 69 CCCATGGTCAGGGCATCTTTGGCCAGTCCGGTGTACAGGGACCGCGAGCATTGCCAGCCA 128 Query 53279 ACGACCATCCGCGAGAACACGTCCAGGACGAACGCCGCGTACACCCAGCCCGAGTGGGTG 53338 |||| | || || |||||||| ||| || || | |||||||||||| ||| || Sbjct 129 ACGATCCGGCGGGAAAACACGTCGGTGACAAAGGCGGTGTACACCCAGCCGGAGAACGTT 188 Query 53339 CGGATGTAGGTCAGGTCCGCCACCCACAACGCGTTCGGTGCCGCCGC-GGTGAACTGACG 53397 | | ||| || | |||||| ||||||||| || | || | | || || || || || Sbjct 189 CTCACGTAAGTGATGTCCGCGACCCACAAC-CGGTTGGGCCAGTAGCTGGCAAAGTGCCG 247 Query 53398 GTTGACCCGGTCAGCCGGCCGGGGTGTTTCAGCTCCC-----TCGCTGCGCGTGGTCTTG 53452 ||||||| |||| | ||||| ||| ||||| || ||| || || || Sbjct 248 GTTGACCAGGTC-----GGCGGGGCATTT---CTCCCGTGGGGCGGAGCGGGTCGTGTT- 298 Query 53453 CGTGTCTTGAGTCTCG--CTATCCCTTGCAGCCCATCGGCTTT---CATCAATCGCTCGA 53507 || ||| | | || | ||||| ||||| | ||||||| ||| | || ||||| Sbjct 299 CGGCGCTTTTG-CCCGTACGATCCCGTGCAGGC---CGGCTTTGCGCATGAGTCTCTCGA 354 Query 53508 CGGTGCAGCGGGCAGCACTATGGC-CCTGTCTGCG------CAATTGGG-----CATGCA 53555 |||||||||||| || | | || || || | | ||| | | || Sbjct 355 TGGTGCAGCGGGCTACATGACCCCGCCGGTGTGGGTCGTGCCGGTTGAGGACAACCCACA 414 Query 53556 CCTTGCGGGCACCGTAGACGCCGAGGTTGTCGGCATGCACCGCGCGGA---CCTGGGTAA 53612 ||| | ||| |||||| || || ||| | ||||| | | || ||| ||| Sbjct 415 TCTTCCTGGCGCCGTAGGCGTCGTAGTTCGCTTTGTGCACGGTGGTGATCTCCTCGGT-- 472 Query 53613 GGAGCTCCCGGTCACGCACCACACGAGGCGCCTCGGTCTTCTGGGGGCTCAGGTGGGCTC 53672 ||| ||| ||| |||| | || ||| | ||| ||||| | ||| || Sbjct 473 -GAGTTCCTCGTCGCGCAGCCTGCG-GGCTGAT-GGTGGTCTGG----TTGTGTGTGCGT 525 Query 53673 GTACCGTGGACGGAGCGATCTGGGCGGACGTATCGCGCAATGCCGCACAGATCGGATCGA 53732 | || ||||| ||||||| | | ||||| ||| |||||||| |||| Sbjct 526 AGAAGGTCGACGGGGCGATCTTCACACCGGCGCTGCGCAGCGCCCGGCAGATCGGCTCGA 585 Query 53733 CTCCGTGTTCATCGCGGTGAGCCGCGACGAACTCCACGATCAGCGCTGTGGGCGGTCGAT 53792 | |||| || || ||| | ||| | | | ||||||||| |||||||||| Sbjct 586 CCCCGTAGTCGTCCTTGTGCGAGTCGATGTAGTTGCAGATCAGCGCAAGGGGCGGTCGAG 645 Query 53793 CTCCGCCGCAAAGAAAGCCGAAGCCTGCTTCAAGATCGTGTTCGCTCGCCGCAGTTCACG 53852 ||||||||| || |||||||| || || | |||| ||| || || ||||| || || Sbjct 646 CTCCGCCGCGAAAAAAGCCGATGCGGATTTGAGGATCTCGTTGGCCCGGCGCAGCTCCCG 705 Query 53853 GTTCTCCCGCTCCAACGCCGCGATGCGGTCAGCGTCCTCACTCGTGGTGCCCGGGCGGAC 53912 || ||| |||| || ||| ||||| | ||| || | |||| || || ||| | Sbjct 706 GTGCTCTTTTTCCAGGGCGCGGATCCGGTCGGTGTCGTCGGTGGTGGCCCCGGGCCGGTC 765 Query 53913 CCCGCCGTCGATCTCGGCCTGACGAACCCAATTGCGCA 53950 ||| |||||| |||| | || | |||| ||||| Sbjct 766 ACCGGTGTCGATTTCGGTGCGGCGGATCCAACCGCGCA 803 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 175750124645520