Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20nasuta_20[genbank_20GCA_5F002222885.1_202017-07-20] 46,105 sequences; 137,224,182 total letters Query= NC_031004.1 Length=41857 Score E Sequences producing significant alignments: (Bits) Value SEQ36899 158 3e-34 seq1762 147 6e-31 SEQ31337 100 8e-17 >SEQ36899 Length=3030 Score = 158 bits (174), Expect = 3e-34 Identities = 262/376 (70%), Gaps = 17/376 (5%) Strand=Plus/Minus Query 1732 GGCGACCCGATGGGGATGCCGCATCCGTCGCCACTGATCCAGCTGACCGCGACGTCCGAG 1791 ||||| |||| || || |||||||||||| ||||||||| |||| |||| |||| Sbjct 2371 GGCGAGCCGAAAGGCCGGCGGCATCCGTCGCCGCTGATCCAGATGACAGCGAGCAGCGAG 2312 Query 1792 GACCAGGTCGACAACGTGTACCGGCCGCTGCGGTCGATGATCCGCATGGGGCCGCTG-TC 1850 |||||||| || ||| ||||| |||||||| ||||||||| ||||||||||||| Sbjct 2311 GACCAGGTGGAGAACACCTACCGTCCGCTGCGCTCGATGATCACCATGGGGCCGCTGCGG 2252 Query 1851 CGACCTGATGCTGATCCGCGAGGGATTCATCAGGCTCC-CG--------GGCGAGGA--- 1898 | | | || || |||||| ||| || | ||| || |||| ||| Sbjct 2251 TGGCTTCTCGCCGA-CCGCGACACCTTCGTCCGCATCCTCGGCAATCTCGGCGGGGACGC 2193 Query 1899 ---CAACCGCATCGACATCGTGACGGCGTCGGCGAACTCCCGACTGGGTAACCCGATCTC 1955 | ||||||||||||| || || ||| |||||| ||| | || | || | || Sbjct 2192 CGCCGACCGCATCGACATGGTCACCGCGAACGCGAACAGCCGCGTCGGCCAGCCCGTGTC 2133 Query 1956 GTTCGGCCTGCACGACGAGAACGGTTTGTACACAAAGGAAAACAAGCTGATCAAGGTCGC 2015 |||| ||| || ||||||| ||| ||| | | ||| |||||| |||||| Sbjct 2132 CTTCGTCCTCCAGGACGAGACCGGGCTGTGGAACGCGAGCAACCGGCTGATGGCGGTCGC 2073 Query 2016 CGAGACTCAGCGCCGTGGCGCGGCCGGCATGGGTGGCCGCACGATGGCGACGACGAACTG 2075 || | |||||||||||| ||||||||||| |||||| | || | |||||||||| Sbjct 2072 GGACAACCAGCGCCGTGGCCTCGCCGGCATGGGCGGCCGCTCCATCGAGACGACGAACGC 2013 Query 2076 CTGGGACCCGGCCGAG 2091 |||| || | |||||| Sbjct 2012 CTGGAACGCCGCCGAG 1997 Score = 86.0 bits (94), Expect = 2e-12 Identities = 207/306 (68%), Gaps = 17/306 (6%) Strand=Plus/Minus Query 1369 TTCCCCACCCTCGGCCACCTGCACGACAAGTGGGTGCGCGCGCACTGCACGGTGCCCGAC 1428 ||||| ||||||||| |||| || ||||| || ||||||||| ||| |||||| Sbjct 2731 TTCCCGACCCTCGGCGACCTCTGGGAAGCCTGGGTCCGGGCGCACTGCCTGGTCCCCGAC 2672 Query 1429 GGTTTCGACCAGGGCCAGCCGTTCGTCTGGTCTGACGGTCAGTTCTGGTGCGCGGCGAAC 1488 || ||| ||| || | ||| | ||||| | ||| | ||||||||| ||| || Sbjct 2671 GGCTTCCACCGCGGTGACCCGCTGATCTGGACCGACTGGCAGTTCTGGGTCGCCAGCAAG 2612 Query 1489 CATTACCGGGTACGGAAGTCTGCGCGGTGGCG---TGAGTCGAAACCGATGCTCGCGGA- 1544 || ||| | || || |||| | | | || | || || | ||| | ||| Sbjct 2611 --TT--CGGCGA--GA--TCCGCGCCGGGCTGAAATGGGACGGGAC-GCCGCT-GAGGAA 2562 Query 1545 ---GGCCTTCACGTATCGCCGCTCGTTGATCGTCGGACCGCAGAAGTCGGGCAAGGGTCC 1601 ||| ||| ||| |||||| | | ||||||||||||||||| | || ||||| || Sbjct 2561 CCAGGCATTCCGGTACCGCCGCGAGCAGGTCGTCGGACCGCAGAAGACAGGGAAGGGGCC 2502 Query 1602 GTGGTCAGCGTCGGTCGTCGCAGTCGAGGCGGTCGGCCCGTCGCTGTTCGCCGGTTGGGC 1661 |||| | ||||| | ||| | |||| |||||||||| ||||| ||| ||||| Sbjct 2501 GTGGGCGGCGTCCATGGTCCTCCTGCAGGCCGTCGGCCCGTGCGAGTTCGACGGCTGGGC 2442 Query 1662 GGACGA 1667 | |||| Sbjct 2441 GCACGA 2436 >seq1762 Length=3526 Score = 147 bits (162), Expect = 6e-31 Identities = 539/837 (64%), Gaps = 8/837 (1%) Strand=Plus/Plus Query 12668 AAGGCCCGCCAGCTCGGCAACGACATCGCGCTGCCCGCGACGTCGGCGGTCGACGCCGCG 12727 |||||||| | ||||||||||||| || || | || || || || ||||||||| Sbjct 1210 AAGGCCCGTGAACTCGGCAACGACACTGCCCTCACAGCCACCTCCGCCTCCGACGCCGCA 1269 Query 12728 ACCGCGATGCTCGAGCTGTCCAAGGGCGGGCTGACGGTGAAGGCGTCGATGGACGCTGCC 12787 | || ||| |||||||||||||||||| | | || | | |||||||| || ||| Sbjct 1270 GCTGCCATGGCCGAGCTGTCCAAGGGCGGCTTCTCCGTCGACGAGTCGATGGGAGCGGCC 1329 Query 12788 CGCGGTTCCCTCGCGCTCGCCGCCGCCGCGCAGATCGATGCGGGTAAGGCCGCGGAGATC 12847 || | || |||||||||||| || |||||||| |||| | | || || ||| Sbjct 1330 AAGGGAACGCTGCAGCTCGCCGCCGCAGCACAGATCGAGGCGGCTGACGCGGCCACGATT 1389 Query 12848 CAGGCCAACGCCATCAACACCTTCCGGCTGAAGGCGACCGACGCCGAGCATGTCGCCGAC 12907 ||| | | || | | | ||| ||| |||| ||||| | | || ||||| Sbjct 1390 CAGTCGCAGGCGCTGCAGGCTTTCTCCCTGCAGGCTGGTGACGCGGCCCGGGTGTCCGAC 1449 Query 12908 GTCCTCGCCAACACCGCGAACAAGTCGTCGGCCGGAATGACCGACATCGCCGACGCCCTG 12967 | ||||| | |||||| || || |||| || | ||||||| | | |||| Sbjct 1450 ATTCTCGCAGGTGCGGCGAACGCCTCATCCGCCGAGATCGAGGGCATCGCCCAGGGCCTG 1509 Query 12968 CAACAGTCGGGATCGGTTGCCGCCCAGTTCAACATGACGTTGGATCAGACTGCCGGTGCG 13027 || ||| | ||| | || || ||||||| ||| | | || | ||| || || Sbjct 1510 CAGCAGGCCGGAACCGTGGCGAACCAGTTCGGCATCAGCATCGAGGACACTTCCACGGCC 1569 Query 13028 CTCGGCGTGATCGCGAACAACGGCATCAAGGGCAGCGACGCCGGCACCCTGCTCAAGTCG 13087 |||| || |||| ||| |||||| ||||| ||||| ||||| ||||||||||| Sbjct 1570 CTCGCAATGTTCGCCAACGCGGGCATCCAGGGCTCTGACGCGGGCACGCTGCTCAAGTCC 1629 Query 13088 ACGCTGCTCGCACTCCAGGACACCGGCAAGCCGGCCACCGAGGCGATGAAAACCCTCGGC 13147 | ||||| || || |||| |||||||| || | ||||||| | |||||| Sbjct 1630 GCACTGCTGGCGCTGACGGACCAGGGCAAGCCCGCGCAGGCGGCGATGGAGGAACTCGGC 1689 Query 13148 ATCGTC-ACCTACGACGCCGAGGGTCGGTTCGTCGGGCT--CGGCAAGATCCTCGAGCAG 13204 | ||| |||||| |||| ||||| || || ||||| || |||| ||| Sbjct 1690 CT-GTCGGTGTACGACATGCAGGGCAACTTCGTTGGACTACCGGCA--CTCTTCGACCAG 1746 Query 13205 GTCAACACAGCCTCGAAGAACCTCACCGAGGAGCAGT-TCAACCAGGCGACATCCATCCT 13263 | | || |||| | | || |||| || ||| | ||| || || | || Sbjct 1747 CTGCAGGATGCGCAGAAGCGCATGACGCCGGAGGCGTATCAGGC-GGCCACCGCCGTGCT 1805 Query 13264 GTTCGGCAGCGACGCGATGCGCCTGGCGGGCATCGCCGCCAAGGAGAACGCCGACTCATT 13323 |||||| ||||| ||||||||||| ||||||| ||| || || ||| || Sbjct 1806 CTTCGGCTCTGACGCCATGCGCCTGGCCGGCATCGGCGCGGAGCAGGGGAGCGAGGGCTT 1865 Query 13324 CCGGAATATGACCGACGCGGTCGGCCAGGCTGGCGGCGCGTCACGCCTCGCGGCCGAGAT 13383 | || ||| || |||| || | | || ||| || ||||||| | Sbjct 1866 CAACAAGCTGAAGGAGCAGGTCACCCGGTCCGGGCAGGCGGCAGAGGTCGCGGCAGCCCA 1925 Query 13384 GAACAAGGGACTGCCGGGTGCGCTCGAGCGCGTGAAGAACGCCGCCGAAACCACCCAGCT 13443 || | |||| || || || ||||| ||||| | | ||||||||||||| | || Sbjct 1926 GACCCAGGGCCTTCCCGGAGCGCTGGAGCGGGCGCAGAACGCCGCCGAGGATCTCGGTCT 1985 Query 13444 CGCCATCTACGAGCTGCTGCGCGGACCGCTCACCGACCTCGCGAACTTCGGCGCCGA 13500 |||||||| | || || ||||| |||||| ||||||| ||||| ||| Sbjct 1986 GAAGATCTACGACGCGGTGAAGGGGCCGCTGACCGACGCCGCGAACGCCGGCGTCGA 2042 >SEQ31337 Length=1603 Score = 100 bits (110), Expect = 8e-17 Identities = 191/275 (69%), Gaps = 36/275 (13%) Strand=Plus/Plus Query 5033 TGCTCGAGGTGCGCGATCCTCGCGGGCCGCAAGTAC-AGGGCGGCGACGGCGTTTCTGCG 5091 ||||| | |||||||||||||| ||||||| ||| | ||||||| || |||| ||| Sbjct 733 TGCTCCCGCTGCGCGATCCTCGCCGGCCGCATCTACGACGGCGGCGGCG-CGTTCAAGCG 791 Query 5092 TCACCCGGGGTGCGACTGCCGACACA-TCCCGGTCCCGGAGCGC-TC--CGGTCACGGCG 5147 |||||| ||||||||| ||| || ||||||||| || | || | | ||| || Sbjct 792 CCACCCGAACTGCGACTGC-GACGCAGTCCCGGTCCACGACTACCTCAACCGGCACAACG 850 Query 5148 AT---------GAGGTCCTGG--------ACCCGCAAGCATTCTTCAACTCACTCACGCG 5190 | || | | || |||||| || | |||| |||| ||| || Sbjct 851 ACCCATCCCTCGACGGCTGGGTGTTCGACACCCGCGAGTA--CTTCCACTCCCTCCCGGA 908 Query 5191 CGAC-----GAACAAGATCGCAAGTTCACCAAGGCTGGCGCGCAGGCGATCCGCGATGGC 5245 | | |||||||||| ||||||||||| || ||| | ||||||||||| ||| Sbjct 909 AGCCCAGCAGAACAAGATC-----TTCACCAAGGCCGGGGCGGAAGCGATCCGCGACGGC 963 Query 5246 GCCGACCCGGCGCAGGTGGTCAACGCGCGCCGCGG 5280 || ||||| |||||||| |||||||| |||||||| Sbjct 964 GCAGACCCCGCGCAGGTCGTCAACGCCCGCCGCGG 998 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 133747533530190