Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20nasuta_20[genbank_20GCA_5F002222885.1_202017-07-20]
46,105 sequences; 137,224,182 total letters
Query= NC_031004.1
Length=41857
Score E
Sequences producing significant alignments: (Bits) Value
SEQ36899 158 3e-34
seq1762 147 6e-31
SEQ31337 100 8e-17
>SEQ36899
Length=3030
Score = 158 bits (174), Expect = 3e-34
Identities = 262/376 (70%), Gaps = 17/376 (5%)
Strand=Plus/Minus
Query 1732 GGCGACCCGATGGGGATGCCGCATCCGTCGCCACTGATCCAGCTGACCGCGACGTCCGAG 1791
||||| |||| || || |||||||||||| ||||||||| |||| |||| ||||
Sbjct 2371 GGCGAGCCGAAAGGCCGGCGGCATCCGTCGCCGCTGATCCAGATGACAGCGAGCAGCGAG 2312
Query 1792 GACCAGGTCGACAACGTGTACCGGCCGCTGCGGTCGATGATCCGCATGGGGCCGCTG-TC 1850
|||||||| || ||| ||||| |||||||| ||||||||| |||||||||||||
Sbjct 2311 GACCAGGTGGAGAACACCTACCGTCCGCTGCGCTCGATGATCACCATGGGGCCGCTGCGG 2252
Query 1851 CGACCTGATGCTGATCCGCGAGGGATTCATCAGGCTCC-CG--------GGCGAGGA--- 1898
| | | || || |||||| ||| || | ||| || |||| |||
Sbjct 2251 TGGCTTCTCGCCGA-CCGCGACACCTTCGTCCGCATCCTCGGCAATCTCGGCGGGGACGC 2193
Query 1899 ---CAACCGCATCGACATCGTGACGGCGTCGGCGAACTCCCGACTGGGTAACCCGATCTC 1955
| ||||||||||||| || || ||| |||||| ||| | || | || | ||
Sbjct 2192 CGCCGACCGCATCGACATGGTCACCGCGAACGCGAACAGCCGCGTCGGCCAGCCCGTGTC 2133
Query 1956 GTTCGGCCTGCACGACGAGAACGGTTTGTACACAAAGGAAAACAAGCTGATCAAGGTCGC 2015
|||| ||| || ||||||| ||| ||| | | ||| |||||| ||||||
Sbjct 2132 CTTCGTCCTCCAGGACGAGACCGGGCTGTGGAACGCGAGCAACCGGCTGATGGCGGTCGC 2073
Query 2016 CGAGACTCAGCGCCGTGGCGCGGCCGGCATGGGTGGCCGCACGATGGCGACGACGAACTG 2075
|| | |||||||||||| ||||||||||| |||||| | || | ||||||||||
Sbjct 2072 GGACAACCAGCGCCGTGGCCTCGCCGGCATGGGCGGCCGCTCCATCGAGACGACGAACGC 2013
Query 2076 CTGGGACCCGGCCGAG 2091
|||| || | ||||||
Sbjct 2012 CTGGAACGCCGCCGAG 1997
Score = 86.0 bits (94), Expect = 2e-12
Identities = 207/306 (68%), Gaps = 17/306 (6%)
Strand=Plus/Minus
Query 1369 TTCCCCACCCTCGGCCACCTGCACGACAAGTGGGTGCGCGCGCACTGCACGGTGCCCGAC 1428
||||| ||||||||| |||| || ||||| || ||||||||| ||| ||||||
Sbjct 2731 TTCCCGACCCTCGGCGACCTCTGGGAAGCCTGGGTCCGGGCGCACTGCCTGGTCCCCGAC 2672
Query 1429 GGTTTCGACCAGGGCCAGCCGTTCGTCTGGTCTGACGGTCAGTTCTGGTGCGCGGCGAAC 1488
|| ||| ||| || | ||| | ||||| | ||| | ||||||||| ||| ||
Sbjct 2671 GGCTTCCACCGCGGTGACCCGCTGATCTGGACCGACTGGCAGTTCTGGGTCGCCAGCAAG 2612
Query 1489 CATTACCGGGTACGGAAGTCTGCGCGGTGGCG---TGAGTCGAAACCGATGCTCGCGGA- 1544
|| ||| | || || |||| | | | || | || || | ||| | |||
Sbjct 2611 --TT--CGGCGA--GA--TCCGCGCCGGGCTGAAATGGGACGGGAC-GCCGCT-GAGGAA 2562
Query 1545 ---GGCCTTCACGTATCGCCGCTCGTTGATCGTCGGACCGCAGAAGTCGGGCAAGGGTCC 1601
||| ||| ||| |||||| | | ||||||||||||||||| | || ||||| ||
Sbjct 2561 CCAGGCATTCCGGTACCGCCGCGAGCAGGTCGTCGGACCGCAGAAGACAGGGAAGGGGCC 2502
Query 1602 GTGGTCAGCGTCGGTCGTCGCAGTCGAGGCGGTCGGCCCGTCGCTGTTCGCCGGTTGGGC 1661
|||| | ||||| | ||| | |||| |||||||||| ||||| ||| |||||
Sbjct 2501 GTGGGCGGCGTCCATGGTCCTCCTGCAGGCCGTCGGCCCGTGCGAGTTCGACGGCTGGGC 2442
Query 1662 GGACGA 1667
| ||||
Sbjct 2441 GCACGA 2436
>seq1762
Length=3526
Score = 147 bits (162), Expect = 6e-31
Identities = 539/837 (64%), Gaps = 8/837 (1%)
Strand=Plus/Plus
Query 12668 AAGGCCCGCCAGCTCGGCAACGACATCGCGCTGCCCGCGACGTCGGCGGTCGACGCCGCG 12727
|||||||| | ||||||||||||| || || | || || || || |||||||||
Sbjct 1210 AAGGCCCGTGAACTCGGCAACGACACTGCCCTCACAGCCACCTCCGCCTCCGACGCCGCA 1269
Query 12728 ACCGCGATGCTCGAGCTGTCCAAGGGCGGGCTGACGGTGAAGGCGTCGATGGACGCTGCC 12787
| || ||| |||||||||||||||||| | | || | | |||||||| || |||
Sbjct 1270 GCTGCCATGGCCGAGCTGTCCAAGGGCGGCTTCTCCGTCGACGAGTCGATGGGAGCGGCC 1329
Query 12788 CGCGGTTCCCTCGCGCTCGCCGCCGCCGCGCAGATCGATGCGGGTAAGGCCGCGGAGATC 12847
|| | || |||||||||||| || |||||||| |||| | | || || |||
Sbjct 1330 AAGGGAACGCTGCAGCTCGCCGCCGCAGCACAGATCGAGGCGGCTGACGCGGCCACGATT 1389
Query 12848 CAGGCCAACGCCATCAACACCTTCCGGCTGAAGGCGACCGACGCCGAGCATGTCGCCGAC 12907
||| | | || | | | ||| ||| |||| ||||| | | || |||||
Sbjct 1390 CAGTCGCAGGCGCTGCAGGCTTTCTCCCTGCAGGCTGGTGACGCGGCCCGGGTGTCCGAC 1449
Query 12908 GTCCTCGCCAACACCGCGAACAAGTCGTCGGCCGGAATGACCGACATCGCCGACGCCCTG 12967
| ||||| | |||||| || || |||| || | ||||||| | | ||||
Sbjct 1450 ATTCTCGCAGGTGCGGCGAACGCCTCATCCGCCGAGATCGAGGGCATCGCCCAGGGCCTG 1509
Query 12968 CAACAGTCGGGATCGGTTGCCGCCCAGTTCAACATGACGTTGGATCAGACTGCCGGTGCG 13027
|| ||| | ||| | || || ||||||| ||| | | || | ||| || ||
Sbjct 1510 CAGCAGGCCGGAACCGTGGCGAACCAGTTCGGCATCAGCATCGAGGACACTTCCACGGCC 1569
Query 13028 CTCGGCGTGATCGCGAACAACGGCATCAAGGGCAGCGACGCCGGCACCCTGCTCAAGTCG 13087
|||| || |||| ||| |||||| ||||| ||||| ||||| |||||||||||
Sbjct 1570 CTCGCAATGTTCGCCAACGCGGGCATCCAGGGCTCTGACGCGGGCACGCTGCTCAAGTCC 1629
Query 13088 ACGCTGCTCGCACTCCAGGACACCGGCAAGCCGGCCACCGAGGCGATGAAAACCCTCGGC 13147
| ||||| || || |||| |||||||| || | ||||||| | ||||||
Sbjct 1630 GCACTGCTGGCGCTGACGGACCAGGGCAAGCCCGCGCAGGCGGCGATGGAGGAACTCGGC 1689
Query 13148 ATCGTC-ACCTACGACGCCGAGGGTCGGTTCGTCGGGCT--CGGCAAGATCCTCGAGCAG 13204
| ||| |||||| |||| ||||| || || ||||| || |||| |||
Sbjct 1690 CT-GTCGGTGTACGACATGCAGGGCAACTTCGTTGGACTACCGGCA--CTCTTCGACCAG 1746
Query 13205 GTCAACACAGCCTCGAAGAACCTCACCGAGGAGCAGT-TCAACCAGGCGACATCCATCCT 13263
| | || |||| | | || |||| || ||| | ||| || || | ||
Sbjct 1747 CTGCAGGATGCGCAGAAGCGCATGACGCCGGAGGCGTATCAGGC-GGCCACCGCCGTGCT 1805
Query 13264 GTTCGGCAGCGACGCGATGCGCCTGGCGGGCATCGCCGCCAAGGAGAACGCCGACTCATT 13323
|||||| ||||| ||||||||||| ||||||| ||| || || ||| ||
Sbjct 1806 CTTCGGCTCTGACGCCATGCGCCTGGCCGGCATCGGCGCGGAGCAGGGGAGCGAGGGCTT 1865
Query 13324 CCGGAATATGACCGACGCGGTCGGCCAGGCTGGCGGCGCGTCACGCCTCGCGGCCGAGAT 13383
| || ||| || |||| || | | || ||| || ||||||| |
Sbjct 1866 CAACAAGCTGAAGGAGCAGGTCACCCGGTCCGGGCAGGCGGCAGAGGTCGCGGCAGCCCA 1925
Query 13384 GAACAAGGGACTGCCGGGTGCGCTCGAGCGCGTGAAGAACGCCGCCGAAACCACCCAGCT 13443
|| | |||| || || || ||||| ||||| | | ||||||||||||| | ||
Sbjct 1926 GACCCAGGGCCTTCCCGGAGCGCTGGAGCGGGCGCAGAACGCCGCCGAGGATCTCGGTCT 1985
Query 13444 CGCCATCTACGAGCTGCTGCGCGGACCGCTCACCGACCTCGCGAACTTCGGCGCCGA 13500
|||||||| | || || ||||| |||||| ||||||| ||||| |||
Sbjct 1986 GAAGATCTACGACGCGGTGAAGGGGCCGCTGACCGACGCCGCGAACGCCGGCGTCGA 2042
>SEQ31337
Length=1603
Score = 100 bits (110), Expect = 8e-17
Identities = 191/275 (69%), Gaps = 36/275 (13%)
Strand=Plus/Plus
Query 5033 TGCTCGAGGTGCGCGATCCTCGCGGGCCGCAAGTAC-AGGGCGGCGACGGCGTTTCTGCG 5091
||||| | |||||||||||||| ||||||| ||| | ||||||| || |||| |||
Sbjct 733 TGCTCCCGCTGCGCGATCCTCGCCGGCCGCATCTACGACGGCGGCGGCG-CGTTCAAGCG 791
Query 5092 TCACCCGGGGTGCGACTGCCGACACA-TCCCGGTCCCGGAGCGC-TC--CGGTCACGGCG 5147
|||||| ||||||||| ||| || ||||||||| || | || | | ||| ||
Sbjct 792 CCACCCGAACTGCGACTGC-GACGCAGTCCCGGTCCACGACTACCTCAACCGGCACAACG 850
Query 5148 AT---------GAGGTCCTGG--------ACCCGCAAGCATTCTTCAACTCACTCACGCG 5190
| || | | || |||||| || | |||| |||| ||| ||
Sbjct 851 ACCCATCCCTCGACGGCTGGGTGTTCGACACCCGCGAGTA--CTTCCACTCCCTCCCGGA 908
Query 5191 CGAC-----GAACAAGATCGCAAGTTCACCAAGGCTGGCGCGCAGGCGATCCGCGATGGC 5245
| | |||||||||| ||||||||||| || ||| | ||||||||||| |||
Sbjct 909 AGCCCAGCAGAACAAGATC-----TTCACCAAGGCCGGGGCGGAAGCGATCCGCGACGGC 963
Query 5246 GCCGACCCGGCGCAGGTGGTCAACGCGCGCCGCGG 5280
|| ||||| |||||||| |||||||| ||||||||
Sbjct 964 GCAGACCCCGCGCAGGTCGTCAACGCCCGCCGCGG 998
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 133747533530190
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |