Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20nasuta_20[genbank_20GCA_5F002222885.1_202017-07-20] 46,105 sequences; 137,224,182 total letters Query= NC_031029.1 Length=93686 Score E Sequences producing significant alignments: (Bits) Value SEQ22413 165 5e-36 SEQ32968 147 1e-30 SEQ43844 145 5e-30 SEQ37149 93.3 3e-14 SEQ44338 91.5 9e-14 >SEQ22413 Length=7522 Score = 165 bits (182), Expect = 5e-36 Identities = 237/332 (71%), Gaps = 8/332 (2%) Strand=Plus/Minus Query 72629 ATCACCGTGATCGGAAACCTGACCGCCGATCCCGAACTGCGCTTCACCCCCTCGGGTGCG 72688 |||||| | |||| ||||| || || ||||| |||||| ||||||| ||||| Sbjct 3681 ATCACCATCGTCGGCAACCTCGTGGCGGACCCCGAGTTGCGCTACACCCCCAGCGGTGCC 3622 Query 72689 CCGGTCGCCAACTTCACCGTCGCAAGCACCCCGCGGTACTTCGACAAGCAGTCCAACGAG 72748 ||||| |||||||| || || ||| ||||| ||||||| ||| ||||| || Sbjct 3621 GCGGTCACCAACTTCCGGGTGGCTTCCACACCGCGACGCTTCGACTCACAGACCAACCAG 3562 Query 72749 TGGAAGGACGCCGAGGCGCTCTTCCTGCGCTGCAACATCTGGCGCGAGCCGGCCGAGAAC 72808 ||| |||| |||||| | |||||| |||||||||||||||| | ||||||||| Sbjct 3561 TGGGTCGACGACGAGGCCTTGTTCCTGACCTGCAACATCTGGCGCACCGCCGCCGAGAAC 3502 Query 72809 GTCACCGAGTCGCTGTCCAAGGGCATGCGCGTCATCGTC-CAG---GGTCGCCTCAAGCA 72864 ||| || | ||| ||||||| || || |||||| | | ||| || |||| Sbjct 3501 GTCGCCAACAGCCTGCACAAGGGCGACCGGGTGATCGTCACCGGCCGGTTGCGTCAA--- 3445 Query 72865 GCGCAGCTACGAGACGAAGGAAGGCGAGAACCGGACGGTCATCGAGCTCGAGGTCGAGGA 72924 || ||||||||| || || ||||| || || || ||||| | ||| ||| || Sbjct 3444 -CGGTCCTACGAGACCCGCGAGGGTGAGAAGCGCACCGTGTTCGAGGTGGAGACCGACGA 3386 Query 72925 GATCGGCCCCGCGCTGCGGTACGCCACCGCCC 72956 | |||||||| ||||||| ||||||||||||| Sbjct 3385 GGTCGGCCCCTCGCTGCGCTACGCCACCGCCC 3354 >SEQ32968 Length=2597 Score = 147 bits (162), Expect = 1e-30 Identities = 237/338 (70%), Gaps = 6/338 (2%) Strand=Plus/Minus Query 72620 GACACCGTGATCACCGTGATCGGAAACCTGACCGCCGATCCCGAACTGCGCTTCACCCCC 72679 || ||| |||||| || |||| ||||| || || || || | | ||| ||| Sbjct 2188 GATACCCAGATCACTGTCGTCGGCAACCTCGTTGCTGACGTTGACCTTAGGTACACGCCC 2129 Query 72680 TCGGGTGCGCCGGTCGCCAACTTCACCGTCGCA--AGCACCCCG-CGGTACTTCGACAAG 72736 || ||| ||||||| |||||| |||||| | | ||||| |||| ||||| | Sbjct 2128 AGTGGCGCGGCGGTCGCGAACTTCCGCGTCGCGTCAACGCCCCGTCGGT---TCGACTCG 2072 Query 72737 CAGTCCAACGAGTGGAAGGACGCCGAGGCGCTCTTCCTGCGCTGCAACATCTGGCGCGAG 72796 |||| ||| ||||| |||| ||||| || ||||| |||||||| |||||||| || Sbjct 2071 AAGTCGAACCAGTGGGTCGACGGGGAGGCACTGTTCCTCAGCTGCAACGTCTGGCGCCAG 2012 Query 72797 CCGGCCGAGAACGTCACCGAGTCGCTGTCCAAGGGCATGCGCGTCATCGTCCAGGGTCGC 72856 | |||||||||||| | | || ||| |||||| ||||| |||||| || || Sbjct 2011 GCCGCCGAGAACGTCGCGAACTCCCTGCACAAGGGGGACCGCGTGATCGTCTCCGGCCGG 1952 Query 72857 CTCAAGCAGCGCAGCTACGAGACGAAGGAAGGCGAGAACCGGACGGTCATCGAGCTCGAG 72916 || ||||| |||||| || || || ||||| || || || ||||| | ||| Sbjct 1951 CTGCGCCAGCGGTCCTACGAAACCCGTGAGGGTGAGAAGCGCACCGTGTTCGAGGTGGAG 1892 Query 72917 GTCGAGGAGATCGGCCCCGCGCTGCGGTACGCCACCGC 72954 ||||| ||| ||||||| | || |||||||||||||| Sbjct 1891 GTCGACGAGGTCGGCCCGTCTCTCCGGTACGCCACCGC 1854 >SEQ43844 Length=619 Score = 145 bits (160), Expect = 5e-30 Identities = 233/335 (70%), Gaps = 0/335 (0%) Strand=Plus/Plus Query 72620 GACACCGTGATCACCGTGATCGGAAACCTGACCGCCGATCCCGAACTGCGCTTCACCCCC 72679 |||||| |||||| | |||| ||||| ||||| ||||||||||||| |||||| Sbjct 1 GACACCCCCATCACCATCGTCGGCAACCTCGTAGCCGACCCCGAACTGCGCTACACCCCG 60 Query 72680 TCGGGTGCGCCGGTCGCCAACTTCACCGTCGCAAGCACCCCGCGGTACTTCGACAAGCAG 72739 || || || | || |||| | |||||| |||||| || ||| |||||||| Sbjct 61 TCCGGCGCCGCCGTGTGCAACGGCCGTGTCGCATCCACCCCCCGCACGTTCAACAAGCAG 120 Query 72740 TCCAACGAGTGGAAGGACGCCGAGGCGCTCTTCCTGCGCTGCAACATCTGGCGCGAGCCG 72799 ||||| ||||| |||| ||||| || || ||||| || |||| | |||||| || | Sbjct 121 ACCAACCAGTGGGAGGATGCCGAAGCACTGTTCCTCACCTTCAACCTGTGGCGCCAGGCA 180 Query 72800 GCCGAGAACGTCACCGAGTCGCTGTCCAAGGGCATGCGCGTCATCGTCCAGGGTCGCCTC 72859 || |||||||| | | ||| |||||| || || |||||| || ||| Sbjct 181 GCGGAGAACGTGGCGAACAGCCTGCACAAGGGTGACCGGGTGATCGTCGTCGGCAATCTC 240 Query 72860 AAGCAGCGCAGCTACGAGACGAAGGAAGGCGAGAACCGGACGGTCATCGAGCTCGAGGTC 72919 ||||| ||||||| ||||| ||||| | || || || |||| |||||| Sbjct 241 CGCCAGCGGTCCTACGAGTCGAAGACCGGCGACACGCGCACCGTGTACGAGATCGAGGCG 300 Query 72920 GAGGAGATCGGCCCCGCGCTGCGGTACGCCACCGC 72954 || ||| ||||||| | || |||||||||||||| Sbjct 301 GACGAGGTCGGCCCTTCCCTCCGGTACGCCACCGC 335 >SEQ37149 Length=713 Score = 93.3 bits (102), Expect = 3e-14 Identities = 161/232 (69%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 44105 GCCATCGAGGAGTTCGACGCGGACCCGGGCGTGGACGTCATCATCCTGGCCCGCGGCGGC 44164 ||| |||| || | || ||||| || | || |||||||||||| | |||||||||||| Sbjct 446 GCCCTCGATCAGCTGGAAGCGGATCCCCGGGTCGACGTCATCATCGTCGCCCGCGGCGGC 505 Query 44165 GGCTCGAAGGAAGACCTCCTCCCGTGGTCCGACGAGGCTCTGGTTCGCGCCGCGTTCG-- 44222 |||||| ||| |||||||| || | ||||| ||| | || || || | ||| || Sbjct 506 GGCTCGGTGGAGGACCTCCTGCCCTTTTCCGAGGAGACACTCGT--CCGGCACGTCCGCA 563 Query 44223 CGTCTGCAACCCCGGTTGTGTCTGCGATTGGCCACGAGAATGATCGGCCGCTCCTCGACC 44282 || | || ||||| || ||| || || || || || ||| |||||||| Sbjct 564 CGATGACGACTCCGGTCGTCAGTGCCATCGGACAAGAACCGGACACCCCGGTCCTCGACA 623 Query 44283 GCGTTGTGGACCTTCGAGCGGCAACTCCGACGGATGCAGCGAAACGTGTCGT 44334 || | || || || || || || || ||||| || ||||| |||||||| Sbjct 624 ATGTCGCCGATCTGCGGGCCGCGACGCCCACGGACGCCGCGAAGCGTGTCGT 675 >SEQ44338 Length=826 Score = 91.5 bits (100), Expect = 9e-14 Identities = 483/758 (64%), Gaps = 49/758 (6%) Strand=Plus/Minus Query 6643 TGCGCAATTGGGTTCGTCAGGCCGAGATCGACGGCGGGGTCCGCCCGGGCACCACGAGTG 6702 ||||| |||| | || | |||| |||||| ||| | ||| || || |||| | | Sbjct 803 TGCGCGGTTGGATCCGCCGCACCGAAATCGACACCGGTGACCGGCCCGGGGCCACCACCG 744 Query 6703 AGGACGCTGACCGCATCGCGGCGTTGGAGCGGGAGAACCGTGAACTGCGGCGAGCGAACA 6762 | ||| | ||||| ||| || |||| ||| |||| || ||||| || || ||| Sbjct 743 ACGACACCGACCGGATCCGCGCCCTGGAAAAAGAGCACCGGGAGCTGCGCCGGGCCAACG 684 Query 6763 CGATCTTGAAGCAGGCTTCGGCTTTCTTTGCGGCGGAGATCGACCGCCCACAGCGCTGAT 6822 |||| | || || |||||||| || ||||||||| |||||||||| |||||||| Sbjct 683 AGATCCTCAAATCCGCATCGGCTTTTTTCGCGGCGGAGCTCGACCGCCCCTTGCGCTGAT 624 Query 6823 CGTGGAGTTCGTCGCGGCTCACCGCGATGAACACGGAGTCGATCCGATCTGTGCGGCATT 6882 | | | | ||| | ||| || || |||| ||||| |||||||| ||| | Sbjct 623 CTGCAACTACATCGACTCGCACAAGGACGACTACGGGGTCGAGCCGATCTGCCGGGCGCT 564 Query 6883 GCGCGATACGTCCGCCCAGATCGCTCCGTCCACGGTACGAGCCCACCTGAGCCCCCAGAA 6942 |||| | | ||||||| ||||| || | || ||| | ||||| Sbjct 563 GCGCAGCGCCGGTGTGAAGATCGCCCCGTCGACCTTCTACGCACACACAA----CCAGAC 508 Query 6943 GACCGAGGCGCCTCGTGTGGTGCGTGACCGGGAGCTCCTTACCCAGG---TCCGCGCGGT 6999 ||| | ||| || | |||| ||| ||| ||| ||| ||| || | | || Sbjct 507 CACC-ATCAGCC-CGCAGGCTGCGCGACGAGGAACTC---ACCGAGGAGATCACCACCGT 453 Query 7000 GCATGCCGACAACCTCGGCGTCTACGGTGCCCGCAAGGTGCATG-----CCCAATTG--- 7051 ||| | ||| || || |||||| ||| | ||| || | | ||| | Sbjct 452 GCACAAAGCGAACTACGACGCCTACGGCGCCAGGAAGATGTGGGTTGTCCTCAACCGGCA 393 Query 7052 ---CGCAGACAGG-GCCATAGTGCTGCCCGCTGCACCGTCGAGCGATTGATG---AAAGC 7104 | || || || | | || |||||||||||| ||||| || | ||| ||||| Sbjct 392 CGACCCACACCGGCGGGGTCATGTAGCCCGCTGCACCATCGAGAGACTCATGCGCAAAGC 333 Query 7105 CGATGGGCTGCAAGGGATAG--CGAGACTCAAGACACGCAAGACCACGCGCAGCGA---- 7158 || | ||||| ||||| | || | | ||| || || || || ||| || Sbjct 332 CG---GCCTGCACGGGATCGTACGGG-CAAAAGCGCCG-AACACGACCCGCTCCGCCCCA 278 Query 7159 -GGGAGCTGAAACACCCCGGCCGGCTGACCGGGTCAACCGTCAGTTCACC-GCGGCGGCA 7216 ||||| ||| ||||| | |||| ||||||||| || || || || | | Sbjct 277 CGGGAG---AAATGCCCCGCC-----GACCTGGTCAACCGGCACTTTGCCAGCTACTGGC 226 Query 7217 CCGAACGCGTTGTGGGTGGCGGACCTGACCTACATCCGCACCCACTCGGGCTGGGTGTAC 7276 || | || ||||||||| |||||| | || ||| | | || ||| |||||||||||| Sbjct 225 CCAACCG-GTTGTGGGTCGCGGACATCACTTACGTGAGAACGTTCTCCGGCTGGGTGTAC 167 Query 7277 GCGGCGTTCGTCCTGGACGTGTTCTCGCGGATGGTCGTCGGCTGGCAGGTCTCGACCACC 7336 | || || ||| |||||||| || || | |||| |||||||| |||| || Sbjct 166 ACCGCCTTTGTCACCGACGTGTTTTCCCGCCGGATCGTTGGCTGGCAATGCTCGCGGTCC 107 Query 7337 ATGCACACCGACCTCGCCCTCGACGCCCTGAACATGGG 7374 || |||||| || ||| || ||||||| |||||| Sbjct 106 CTGTACACCGGACTGGCCAAAGATGCCCTGACCATGGG 69 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 299502013797535