Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20nasuta_20[genbank_20GCA_5F002222885.1_202017-07-20] 46,105 sequences; 137,224,182 total letters Query= NC_031061.1 Length=53431 Score E Sequences producing significant alignments: (Bits) Value seq6253 212 2e-50 SEQ30131 161 3e-35 SEQ35830 114 4e-21 >seq6253 Length=4700 Score = 212 bits (234), Expect = 2e-50 Identities = 380/552 (69%), Gaps = 16/552 (3%) Strand=Plus/Minus Query 44729 CTCACACTGACCGATCTGTTCTGTGGAGCGGGAGGCTCGTCGACCGGCGCGGTCGGCATC 44788 ||||| || |||| | ||||| || || || || || || ||||| || ||| | || Sbjct 4473 CTCACCCTCTCCGACTTCTTCTGCGGTGCCGGCGGATCCTCCACCGGAGCACTCGACGTC 4414 Query 44789 CCCGGCGTCACCGTCCGGATCGCCTCAAATCACTGGGACCTCGCCGTCGAGACCCACAAC 44848 ||||||||| |||||| |||| | | |||||||| ||||||||||| |||||| | Sbjct 4413 CCCGGCGTCGACGTCCGCGCCGCCGCCACCCACTGGGATCTCGCCGTCGAAACCCACCAG 4354 Query 44849 TCGAATCACCCCGACGCGGACCATCTGTGCGCGGACCTGTCGCAGATCGATCCGCGGTAC 44908 | ||||| ||||| || || | ||||| ||| | ||| ||| ||| | | Sbjct 4353 CGCCACCACCCGGACGCCGAACACATCTGCGCCGACATCAGCCAGTACGAGCCGAGCTTG 4294 Query 44909 TTCCCGACGACCGACATCCTGTGGGCGTCTCCCGAGTGTACGAATCACTCGGTGGCGAAG 44968 ||||| || ||| || ||| || ||| || || | ||| |||||||| || Sbjct 4293 TTCCCCCACACGGACCTCGCCTGGTTCTCCCCCTCCTGCACCAGCCACACGGTGGCGCAG 4234 Query 44969 GGC----CGCAAGCGGGTTGGCTCACAGCCGGACCTCTTCGGCGAGA---TCCTTCCAGA 45021 ||| | | || | || | | ||| || || |||| || | ||| || || Sbjct 4233 GGCATGGCCCGTGCCGACCGGGCCGCCGCC-TACGTCCTCGGAGAAACCCCCCTCCCCGA 4175 Query 45022 CGCGGCGTCGGAGCGGTCCCGCGCGACCATGTGGGACGTCCCGCGGTTCGCCGAGGTCCA 45081 || ||| || || |||||||| |||||||||||||| ||| ||| ||||| ||| Sbjct 4174 CGACGCGCACGAACGATCCCGCGCCACCATGTGGGACGTGGTGCGCTTCACCGAGTACCA 4115 Query 45082 CCACTACCGCGCCGTGATCGTCGAGAACGTTGTCGACGCGTTTCAC----TGGGTTCCGT 45137 ||||||| ||| || || ||||||||||| ||| | |||| |||| || | Sbjct 4114 CCACTACGCCGCGGTCATTGTCGAGAACGTCACCGAGG----TCACCAAGTGGGCGCCAT 4059 Query 45138 TCCGCGCGTGGCTGATGGCGATGGACTGCCTCGGCTACGACCACCACATCGTCATGCTCA 45197 ||| ||||||| | ||||||||||| ||||||||| | |||| ||| |||||||||| Sbjct 4058 TCCCCGCGTGGATCATGGCGATGGAAGCGCTCGGCTACAAGCACCGCATTGTCATGCTCA 3999 Query 45198 ACTCGATGCACGCCCAAGCGTTCGGTCCCGGGGCGCCGCAGTCTCGCGATCGGATGTACG 45257 || ||||||||| || ||| |||| || |||| || ||||| ||| | ||| Sbjct 3998 ACAGCATGCACGCCGGCCTGTACGGCCCCGCCGCCGCGCAATCCCGCGACCGGTTCTACT 3939 Query 45258 TCGTTTTCTGGC 45269 ||| ||||||| Sbjct 3938 GCGTGTTCTGGC 3927 Score = 95.1 bits (104), Expect = 4e-15 Identities = 133/184 (72%), Gaps = 2/184 (1%) Strand=Plus/Minus Query 45813 CGTTCATGGCCGAGCTGCGCGGCGGCGGGTCGAAGCACC-GGCCCGTGTCGGATCCGCTC 45871 ||||||| || || || ||||||||||| | |||||| || | | ||||| || Sbjct 3612 CGTTCATCGCGGAACTCCGCGGCGGCGGCA-GTAGCACCCGGTCTGCCCACGATCCCCTG 3554 Query 45872 TCCACCGTCACCGCGTCGGGCAACCACCACGGTCTCGTCACCACCTACTACGGGAAGGGC 45931 ||||||||||| || || || | |||||| || || |||| | |||||||| || ||| Sbjct 3553 TCCACCGTCACAGCATCCGGAACCCACCATGGCCTGGTCATGTCGTACTACGGCAACGGC 3494 Query 45932 GGCGCCCAGTCGACGGACGCACCGCTGCCGACGGTGACCACCGTCGAAAAGCACGCACTC 45991 | ||| | || | | ||| ||||||| || |||||||| || ||||| || ||| Sbjct 3493 ACAACGCAGACCACTGGCCGGCCGATGCCGACCGTCACCACCGTGGAGAAGCAGGCGCTC 3434 Query 45992 CTGA 45995 |||| Sbjct 3433 CTGA 3430 >SEQ30131 Length=2206 Score = 161 bits (178), Expect = 3e-35 Identities = 268/390 (69%), Gaps = 2/390 (1%) Strand=Plus/Plus Query 47904 GTGCGTATCCGATCGACGAAGCCAGAGTTCTGGCGATCTCACCGCATCGCGTCTGTGTCG 47963 ||| | ||| ||||||||||||| ||||||||| | || | || ||| |||| Sbjct 1687 GTGAGGATCAGATCGACGAAGCCGGAGTTCTGGAGTTCGAAGACGATAGCGGCTGTCGAC 1746 Query 47964 TGGGACGCCCGGCTGGTCCTGAAGGGCCTCGAATCGTTCGTCGATGACAACGGTGTCGGC 48023 ||||| || || |||||||| ||||| || || | ||||||||||| ||||| ||| Sbjct 1747 TGGGATGCGCGTCTGGTCCTCAAGGGACTTGAGAGCTATGTCGATGACAATGGTGTGGGC 1806 Query 48024 AAGGACGACATCGAGTTGATCATCGGGGATCTGTTCCAGCGGGACCTGATTCGCGAGCCC 48083 ||| ||||| | ||||| || ||| ||||| || |||| |||||||| || Sbjct 1807 CGGGATGACATTGCTCTGATCGTCTCGGAAGTGTTCGTTCGCGACCAT-TTCGCGAGGCC 1865 Query 48084 NNNNNNNNNNNNNNNN-GGGTGTCCGAAGCGATTTCCGAACTCCATGAGGCCGGTCTGGT 48142 ||||||||||||| |||||| | || ||| |||||||| | Sbjct 1866 TCGCGAGACTGTCGCGAGGGTGTCCGAAGCCATTTCCCAGCTGACTGAAGCCGGTCTCCT 1925 Query 48143 GTGGCGGTACGACCACGAGGGCACCTCGCTGCTCTATGTGGCGTTCTGGGAGAGCATCCA 48202 ||| | ||||| ||| || | || | || | || |||||| ||| |||| Sbjct 1926 ATGGAGATACGAGGCCGATGGTAATGAATTGATATACATTTCGAACTGGGACAGCCTCCA 1985 Query 48203 GAGAGTCGACAAGCCACAGCCGGGACGTTTGCCCAGGCCAGACGGCACGATGAACTACAA 48262 || ||||||||||| | |||||||| ||||||||||||||||| ||||||||||| Sbjct 1986 ACGAATCGACAAGCCAAACAAAGGACGTTTCCCCAGGCCAGACGGCACAATGAACTACAA 2045 Query 48263 GGACTCCCAAATTCGTGAGTCCCTCGCGAG 48292 ||| || ||||| ||| ||||||| Sbjct 2046 GGAATCAACGATTCGCGAGAGTGTCGCGAG 2075 >SEQ35830 Length=2388 Score = 114 bits (126), Expect = 4e-21 Identities = 286/426 (67%), Gaps = 19/426 (4%) Strand=Plus/Plus Query 37504 GTCAGCTCCAGAAGCTTAAGCAGAA-TCATGGGCAACCGTGGAGATCATCACCACGGTTG 37562 |||||| | |||||| | ||| || |||||||||| || || || ||| | ||| Sbjct 778 GTCAGCGTCGGAAGCTCCACGCGAAGTCGTGGGCAACCGAGGTCATGATGACCCTGCTTG 837 Query 37563 CGGCAGACGGGAAAGCGCGCGAGATGGTGATGGTTGACCGTCGCACATTCACCATGTGGC 37622 | | ||||| || | |||||||||| | || || || || || | || ||||||| Sbjct 838 CCGATGACGGCAAGGAGCGCGAGATGCACCTTGTGGATCGCCGGACGCTGACGATGTGGC 897 Query 37623 TCGCCACCATCGACCCCAGCCGTGTGTCCGAGACGGCCCGCC--CAATCA-TCGAAGCGT 37679 ||||||| ||||| || ||||||| || ||| | || || || | || |||| Sbjct 898 TCGCCACGATCGATGCCGGCCGTGT---CGCCCCGGAACACCGTGAAGCACTGGAGGCGT 954 Query 37680 TCCAGGCCGAAGCGGCCGACGCGCTCGATGCCTACTTCCACGAGGGCGGGGCGATCAACC 37739 |||||| || || |||||||| ||||| ||||||||| | || || |||||||||| Sbjct 955 ACCAGGCTGAGGCCGCCGACGCCCTCGACAAGTACTTCCACAATGGTGGTGCGATCAACC 1014 Query 37740 CGAACGCCAGTGAAGACCAACTGTCCCGTCTCGCGCAGCAAG-CGCGTGCGCAGGCCGGC 37798 || ||| || |||| || | || || | || || ||| |||| | Sbjct 1015 CGCGTGCCGACGAGCACCAGCTCAACGCACT-GCTCCGCCAGTCGCAGATGCAGATGGAA 1073 Query 37799 GTCCTACAGGCGCTGAAGGG---GATCGTTGACCCGAGG--CACCTCGAGGCGAAGGGGC 37853 | ||||| |||||| |||| | ||| | ||||| || ||||||| | Sbjct 1074 CTGTGCCAGGCCGCGAAGGGCCTGATC-----CACGAAGACCACCTGGAAGCGAAGGCCC 1128 Query 37854 GCATCGTCCTTGCACGAGCGCTAGGGGAGAAGCCGGAGATCGACCCGGCGACCGTGCCGC 37913 |||||||||| || || | || || ||| ||||| |||||||| |||| |||| Sbjct 1129 GCATCGTCCTGGCCCGTGGACTCGGCGAGGCACCGGAACTCGACCCGATGACCCGCCCGC 1188 Query 37914 TGTACG 37919 |||||| Sbjct 1189 TGTACG 1194 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 170764055997930