Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20nasuta_20[genbank_20GCA_5F002222885.1_202017-07-20] 46,105 sequences; 137,224,182 total letters Query= NC_031072.1 Length=47898 Score E Sequences producing significant alignments: (Bits) Value SEQ29447 197 4e-46 SEQ26880 113 1e-20 SEQ27525 102 2e-17 SEQ44291 80.6 8e-11 >SEQ29447 Length=7397 Score = 197 bits (218), Expect = 4e-46 Identities = 255/349 (73%), Gaps = 5/349 (1%) Strand=Plus/Minus Query 15140 GCGACGGCGCTCGTCGAGGTGGGCGACCCGATGAAGATGTACGCCAACACCGCCGTCCCG 15199 |||||||| || || ||| ||| |||||||||||||||||||||| || || || ||| Sbjct 5641 GCGACGGCACTGGTGGAGTCGGGTGACCCGATGAAGATGTACGCCAGCAATGCGGTTCCG 5582 Query 15200 GAATCGCTGAAGTTCCCGCACGACGCCGTCGGCTCCGACCACGACTCGATCGGCCTGTTC 15259 || |||||||| | |||||||||||| |||| |||||| || || ||||| |||||| Sbjct 5581 GAGTCGCTGAACTACCCGCACGACGCGATCGGGAGCGACCATGATTCCATCGGTCTGTTC 5522 Query 15260 CAGCAGCGGCAGGCAGGGTGGGGGACCGTCGCCGACCGGATGGATCCGCACCGCTCGGCG 15319 |||||||| ||||| |||||||| |||||||| | || |||||||||||| | ||| Sbjct 5521 CAGCAGCGTCAGGCCGGGTGGGGCACCGTCGCACAGCGTATGGATCCGCACGACAGTGCG 5462 Query 15320 AAGATGTTCTACGACGC---GCTGATGAAGGTCCCCGGCTGGGAAACCATGGACATGGGT 15376 |||||| | || ||| |||| |||| |||| |||| | | |||||| || Sbjct 5461 TCGATGTTTTTCGCCGCGATGCTGCGGAAGTTCCCGAACTGGCAGTCGATGGACCCCGGC 5402 Query 15377 GCCGCGGCACAGGCGGTGCAGCGCAGCGCATTCCCCGGGAAGTACGCCGGCCGGATGGCG 15436 |||| ||| |||| |||||| | ||||| || | |||| | | ||||| Sbjct 5401 GCCGTGGCGCAGGGTGTGCAGGTCTCGGCATTTCCGGACCGGTACAACACCAAGATGGGT 5342 Query 15437 CGTGCGACGGAGCTCGTCGACAAGTTC-GGCATCTACGACCAGGGCGGC 15484 | || |||||||| | || | | ||| | ||||||||||||||| Sbjct 5341 AGGGCTGAAGAGCTCGTTG-CATCTGCGGGCCTGTACGACCAGGGCGGC 5294 >SEQ26880 Length=5820 Score = 113 bits (124), Expect = 1e-20 Identities = 128/170 (75%), Gaps = 5/170 (3%) Strand=Plus/Minus Query 15170 ATGAAGATGTACGCCAACACCGCCGTCCCGGAATCGCTGAAGTTCCCGCACGACGCCGTC 15229 |||||||||||||||||| | || || || || || |||| ||||| ||||| || ||| Sbjct 1517 ATGAAGATGTACGCCAACCCGGCGGTGCCTGAGTCCATGAACTTCCCCCACGATGCGGTC 1458 Query 15230 GGCTCCGACCACGACTCGATCGGCCTGTTCCAGCAGCGGCA----GGCAGGGTGGGGGAC 15285 ||| |||| |||||| ||||||| ||||||||||| | ||| | |||||| || Sbjct 1457 GGCGGCGACGCGGACTCGGTCGGCCTTTTCCAGCAGCGCGACAATGGC-GCGTGGGGCAC 1399 Query 15286 CGTCGCCGACCGGATGGATCCGCACCGCTCGGCGAAGATGTTCTACGACG 15335 | ||| ||||| ||||| || | || || || ||||||||||||| Sbjct 1398 CATCGAAGACCGCATGGACCCTGAGCGGTCCGCCGGAATGTTCTACGACG 1349 >SEQ27525 Length=13899 Score = 102 bits (112), Expect = 2e-17 Identities = 136/189 (72%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 2840 GCGATCGCCTACCACGACAACATGATCGCGATCGCCGGTCTCGCCCACTTCCTCAACCTC 2899 |||||||||||||||||| ||||| |||| || | || || |||||||| ||||| Sbjct 9806 GCGATCGCCTACCACGACTCGATGATGGCGAAGGCGGTGCTGGCGCACTTCCTGAACCTT 9747 Query 2900 GAAGGCAAGGGCGGCTCGTACGCGCTGGCCAGCGTCCAGGAGCACACGTTCTCCCAGTCG 2959 || |||||||||||||| ||||| ||||| |||| | | |||| ||||||| Sbjct 9746 GAGGGCAAGGGCGGCTCCTACGCCCTGGCGGAGACCCAGTCGGATCTGTTCATCCAGTCG 9687 Query 2960 GTGCAGACCGTCGGCGAGCAGACCCGCGACATCGGCAACGCGCACGTGATCGAGGACCTC 3019 |||||||| ||| || || |||| || || | |||| | | || |||||| Sbjct 9686 CTGCAGACCATCGCGGACTGGATAGCGGACACCGCCACCCAGCACATCGTGGAAGACCTC 9627 Query 3020 GTCGACATC 3028 || |||||| Sbjct 9626 GTTGACATC 9618 >SEQ44291 Length=775 Score = 80.6 bits (88), Expect = 8e-11 Identities = 115/162 (71%), Gaps = 0/162 (0%) Strand=Plus/Minus Query 37426 GACGACTTCGACTACGGCCACGCCTGCGAGCTCGCCGCCCGCGAGTACTGGCTGTACAAG 37485 ||| || |||||| ||||||| | |||| ||| || | |||| | |||| Sbjct 737 GACCACCTCGACTGGGGCCACGACATCGAGGACGCATTGGTCGCCTGGTGGCGGCGCAAG 678 Query 37486 AACCCCGGGTGGCGGCTGTCCCGCGGCGAAGTCGCCTACACCAACGACGCCCTGACGTTC 37545 |||||||| |||| | || ||| || ||||||||||| || || |||| ||||| Sbjct 677 AACCCCGGATGGCAGACCAACCACGGGGAGATCGCCTACACCGACCCCGACCTGCCGTTC 618 Query 37546 CCGAACCTCGCGACCCTCGACCTCCGCGCCTCGCGCGGCCGC 37587 ||||||| || ||||| |||| ||| ||| ||||||||| Sbjct 617 CCGAACCAGGCCACCCTGGACCGCCGGGCCCGCCGCGGCCGC 576 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 153068149758600