Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20nasuta_20[genbank_20GCA_5F002222885.1_202017-07-20] 46,105 sequences; 137,224,182 total letters Query= NC_031078.1 Length=50082 Score E Sequences producing significant alignments: (Bits) Value SEQ32872 587 2e-163 SEQ43235 111 5e-20 >SEQ32872 Length=2637 Score = 587 bits (650), Expect = 2e-163 Identities = 1205/1767 (68%), Gaps = 67/1767 (4%) Strand=Plus/Minus Query 38676 AGACCCTTGCG--GGTAGCTCCGGTCGAGTCGAAGGCACCGGCCTTGATCAAGGACTCGA 38733 || |||||||| ||| || || ||||||||||| ||||||||||||| || ||| Sbjct 1828 AGGCCCTTGCGCGGGTGGCCGAGG--GAGTCGAAGGCGCCGGCCTTGATCAGTGAGTCGG 1771 Query 38734 TGGCACGCTTGCT-CA--CGGTCGCCTGAGTCGCAGCCT-TC-AGGAAGTCCGGCAGGGA 38788 || | |||||| | || |||| || |||| | | | || ||| |||| | | | Sbjct 1770 TGACGCGCTTGTTGCAGGCGGTGGC----GTCG-ATCTTGTCGAGGTAGTCGGAGAAGTC 1716 Query 38789 AGTGAACTTCCCCCAGGCTTCCCGGAGTTCGGCGATCTCCTGGACCATGCCCTCGCCCAC 38848 |||||||||||| | || || || |||| | ||| | | ||||||| || Sbjct 1715 CGTGAACTTCCCCTTCTCCTCGCGCGCCGCGATGATCGAGTCGACGACGTCCTCGCCGAC 1656 Query 38849 GTTCTTCACGGCGGTCAGCCCGAAGCGGATCTCCGTCTTCCCGTTCGGGGTGAAGGAGCT 38908 ||| || ||| || ||||||||||| ||| || | ||| || | || | Sbjct 1655 GTTGCGGACCGCGCCGAGGCCGAAGCGGATGTCC----TCGCCGACGGACTGGA--AGGT 1602 Query 38909 GTTCGAGACCGACACGT-------CGGGCGGCAGGACGTGAAGTCCCATCCGCCGTGCCT 38961 || || | ||| ||| ||||| | || ||| | | || | | || | Sbjct 1601 GT---AGGCGGACTCGTTGACGTCCGGGCTG-AGCACGCGCACCCCGAGGTGGCGGCAGT 1546 Query 38962 CGCCGAGGTACGTGGCCATCTTGTTCTTGTCGTCGCCCACCGAGGTGAGCACGGCCGCCA 39021 || ||||||| | || ||||| ||| | ||| ||||||||||||||| ||||||| Sbjct 1545 CGGCGAGGTAGATCGCGGACTTGTCCTTCTTGTCCGCCACCGAGGTGAGCAGCGCCGCCA 1486 Query 39022 TGTACTCGGCCGGGTAGTGCGTCTTCAGGTACGCCGTGCGGTAGGCGATGAGACCGTACG 39081 |||||||||| | ||| ||| ||| ||||| || || | | || | |||||||| Sbjct 1485 TGTACTCGGCGGTGTAATGCTCCTTGAGGTAGGCGGTCCAGAAGCTCACCAGACCGTAGC 1426 Query 39082 CCGCAGAGTGCGCCTTGTTGAAGGCGTACCCGGCGAAGGGTACGAGCACGTCCCACACCG 39141 | || | ||||| |||||||| ||||| |||||||| || | | | |||||||| | Sbjct 1425 CGGCGGCGTGCGACTTGTTGAGCGCGTAGCCGGCGAACGGCAGCACCGTGTCCCACAGGG 1366 Query 39142 CCTGGATGGCACCGTCCGAGTAGCCTCGCTCGCGCGC-TCCCTTCTG-GAAGTTCACGAA 39199 |||||| ||| |||| |||||||| | | | | | || | | ||| || |||| Sbjct 1365 CCTGGACGGCCTCGTCGGAGTAGCC--GTTGGACTTCATGCCGGCGGCGAACTTGTCGAA 1308 Query 39200 CTCCTTGGCCAGAACCTCGGGCTTCTTCTTGCCCATGGCTCGGCGGAGAAGGTCGGCCTG 39259 |||||||||||| |||||||||||||||||||||||||| ||||| |||||||| Sbjct 1307 CTCCTTGGCCAGCACCTCGGGCTTCTTCTTGCCCATGGCCTTGCGGAACCCGTCGGCCTC 1248 Query 39260 ACCCAGGCTGTACCCAGCGAGGATCTGTGCCGCCTTCTGCACCTGCTCCTGGTAGATGAC 39319 ||| | |||| |||| |||| | | || | |||||||||||| | || Sbjct 1247 ACCGGCGGTGTAGTTCGCGACCTTCTGCGAGATCCTCATGATCTGCTCCTGGTACACGAT 1188 Query 39320 CAGCCCGTAGGTCGGCCCCAGGATCTCGGCAAGCGGCTCCTCCACCTCGGGGTGGATCGG 39379 || ||||||||| | ||||||| || | | ||| | | ||| ||||||||||| Sbjct 1187 GAGACCGTAGGTCTCCTCCAGGATGTCCTTGATGGACTCGGCGAGCTCCGGGTGGATCGG 1128 Query 39380 CGTGATCGCCTGCTGCCCGTTCTTGCGGAGGGCGTAGTTCGTGTGCGAGCCCACGCCCAT 39439 | ||||| || | |||||||||||| ||||||| | ||||| || || ||||| Sbjct 1127 CTCGATCGGCTTGCGGCCGTTCTTGCGGTCCGCGTAGTCCCAGTGCGCCCCGACACCCAT 1068 Query 39440 CGGACCCGGACGGTACAGCGCGACG-ACGGCGCTGATGTCCTCGAAGTTGTCCGGCTTCA 39498 ||| ||||| ||||||||||| | | ||| | | ||||| | |||| | ||||||| Sbjct 1067 CGGGCCCGGCCGGTACAGCGCCAGGGACGCCACA-ATGTCGTTGAAGCCGGTGGGCTTCA 1009 Query 39499 GCAGGCGGAGCAGTGAGCGCATCGCGCCGCCGTCGAGCTGGAAGACCGAGAGCGTGTCGC 39558 | ||||||| |||| ||||| ||| |||||||||| ||||||||| | Sbjct 1008 TGCGCTTGAGCAGTTCCTGCATGCCGCCGGAGTCCAGCTGGAAGATGCCGAGCGTGTCAC 949 Query 39559 CCCTGGCCAGCAGCTCGTAGGTAGCAACGTCGTCCAGCGGGATGTTCTCCAGGTCGACGT 39618 | | ||||||||| || |||| || |||||| || | |||||||||||||| || Sbjct 948 CGCGGGCCAGCAGTTCATAGGACGCCGGGTCGTCGGTCGACAGGTTCTCCAGGTCGAAGT 889 Query 39619 GCTCCCCACGGTTGGCGCGGATGTTCTCGACCGCGTCGCCCATGATCGTGAGGTTCCGGA 39678 ||| || ||||| ||||||||| | |||| | |||| |||||||| || | Sbjct 888 CCTCGCCCCGGTTCTTCTTGATGTTCTCCAGGCAGTCGGCGATGACGGTGAGGTTGCGCA 829 Query 39679 GCCCGAGGAAGTCCATCTTCACCGCGCCCAGGCTCTCGCACTGGGGGTAGTCCCA--CTG 39736 |||| |||||||||||||||| | ||| | | ||| || |||||| ||| | | Sbjct 828 GCCCCAGGAAGTCCATCTTCAGCAGGCCGATGGCCTCACAGGCCGGGTAGGGCCAGCCGG 769 Query 39737 CG-TCACGGTCACGCCGTCCGCAGGGCGGACCCACACCGGGAGGTGATCGACCAACGGCT 39795 | ||| || ||||||| ||||| ||||| ||||| ||| |||| || |||| Sbjct 768 TGATCAGGG---CGCCGTCGTTGGGGCGCTTCCACATCGGGATGTGGTCGAGCAGCGGCA 712 Query 39796 CGTTGGACATGATCACACCGGCCGCGTGAACGCCCATCTGCCGGACGAGACCTTCGAGCC 39855 | || ||||||||| || ||||| |||| ||| ||||| | || || || | Sbjct 711 CCGAGGCCATGATCACTGCGCAGGCGTGGCCGCCGGCCTGGCGGACCACGCCCTCCAGGC 652 Query 39856 CGAGCGCAGTGTCGATGACCTGCTTCGAGTCCGGGTCGTTCTCGTACAGCCCACGGATCT 39915 |||| || |||| || || ||| |||| ||| ||||| || ||||||| Sbjct 651 CGAGGGCGTCGTCGTAGATCTCCTTGACCACCGGATCGGTCTCGATGAGGGTGCGGATCT 592 Query 39916 CGCCCGCCTCGTCGTAGCGCGGGTGCTCCGGGTTGAAGATGCCCTCCAGGGGCATCGAGT 39975 | | ||| || ||||||||||||||||||| | | |||||| || || || | Sbjct 591 CCGCGGCCGCGCCGTAGCGCGGGTGCTCCGGATCCATGATGCC------GGACAGCGGGA 538 Query 39976 TGCCCAT---CACGTCGGCCGGGTAC---GCCTTGGTCAGCTTCTCGCCGACCTGGAA-- 40027 || || | | | | |||||| | |||||||| | | ||| ||| |||||| Sbjct 537 TGTCCTTCGCCGCCTGCGCCGGGGGCAGGGCCTTGGTGATCCGGTCGGCGATCTGGAAGC 478 Query 40028 -GGGCT---TGTCCAGCACGCGCGCCGCGTCCTTCATCGCGTTGCGCGCCTTGATCCGAC 40083 ||||| || | |||| || |||||||| ||||| | | ||| | | | Sbjct 477 CGGGCTGGCCGTGGTGGGCGCGGGCGGCGTCCTTGATCGCCTGCTTGGTCTTCACCGTGC 418 Query 40084 CGAAGGTCCCGATCTGTGCGACCTTGTCCGCCCCGTACTTCTCGGTGACGTACCTGATCA 40143 ||||||| || ||| |||||||||||| | || | |||| || | |||| | ||||| Sbjct 417 CGAAGGTGATGACCTGGGCGACCTTGTCCTCGCCCCAGTTCTGGGCGGCGTAGCGGATCA 358 Query 40144 CGTCGCCCCGTCGCCGGTCAT---CGAAGTCGATGTCAACGTCGGGCATGGACACGCGCT 40200 ||| |||||||||| ||||||||||||| | ||||| ||| ||| | Sbjct 357 TCTCG---GAACGCCGGTCATCGGCGAAGTCGATGTCGATATCGGGGGCGGAGGGGCGTT 301 Query 40201 CGGGGTTCAGGAACCGCTCGAAGATGAGCCCGTGCGGGATGGGGTCCAGGTCTGTGATGC 40260 | ||||| ||||| |||||||| || ||||||||| ||||||||| | || ||||| Sbjct 300 CCGGGTTGAGGAATCGCTCGAACATCAGCCCGTGCTCGATGGGGTCGATGTTGGTGATCG 241 Query 40261 CGAGGCAGTAGGCGACCAGCGAACCGGCAGCCGAGCCACGTCCGGGTCCGACCCACACGC 40320 || |||||||||||| | ||||| || |||||||| || || ||||| | | || Sbjct 240 TCAGTGCGTAGGCGACCAGGGCGCCGGCGGCGGAGCCACGGCCCGGGCCGACGGAGATGC 181 Query 40321 CGTTCTCCTTGGCCCAGCCGATGAAGTCGGCGACGACCAGGAAGTAGGACGGGAACCCCA 40380 || | ||| ||||| |||||||||||| ||||||||||||||| | ||| Sbjct 180 CGATGGAGCGGGCGTGCTTGATGAGGTCGGCGACGACGAGGAAGTAGGACGGGTAGCCCT 121 Query 40381 GCTGGATGATCATGTCGATCTCGTACT 40407 | | ||| | ||||||||||| Sbjct 120 TCATGTCGATGACACTGATCTCGTACT 94 >SEQ43235 Length=559 Score = 111 bits (122), Expect = 5e-20 Identities = 175/248 (71%), Gaps = 6/248 (2%) Strand=Plus/Plus Query 40765 AGTCGTTCGTGACCACGGGGGTGAGCGCGAGGTGCTTGCCCAGCCGGTAGAGGTCGTCGC 40824 ||||||| ||||||| || | ||| |||||| | || | | | ||||||||| | Sbjct 6 AGTCGTTGGTGACCAGCGGCGGGAGGGCGAGGCGGCGTCCGATCTCGAGGAGGTCGTCCC 65 Query 40825 GGACACGCCGCTCGATCTCCAGGCCGTGGTCCATGATCTCCAGGAAGTACCGGTCCCGAC 40884 |||| ||| |||||| ||||||||||||||||| ||| |||||||| ||| || | Sbjct 66 GGACCCGCTTCTCGATGGACAGGCCGTGGTCCATGAGCTCGAGGAAGTAGTTGTCGCGGC 125 Query 40885 CGAAGACCTCCAG--GTACCGGC-CAGCCTCGGCAACGGCCTCGTCGTACTGCCCGAGGT 40941 || ||| ||| | | || | | |||||| | ||||||| | |||| ||||| Sbjct 126 CGTAGATGTCCTGCCATTTCGCCGCGGCCTCG---AGCGCCTCGTTGAACTGGCCGAGCC 182 Query 40942 TGAGCCGGGTCATGATCGCACCGCCAGGGCATCCCGTGGTGACGATCAGGCCCTCGTTGT 41001 ||||||||| | | | ||| ||||| || |||||| |||| ||| ||| || Sbjct 183 GCAGCCGGGTCTGCACCTCGCCGGAGGGGCAGCCGGTGGTGGCGATGCTGCCGTCGGCGT 242 Query 41002 GCTCGGCG 41009 |||||||| Sbjct 243 GCTCGGCG 250 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 160053123412440