Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20nasuta_20[genbank_20GCA_5F002222885.1_202017-07-20] 46,105 sequences; 137,224,182 total letters Query= NC_031097.1 Length=52077 Score E Sequences producing significant alignments: (Bits) Value seq6253 179 1e-40 SEQ30131 109 2e-19 >seq6253 Length=4700 Score = 179 bits (198), Expect = 1e-40 Identities = 393/582 (68%), Gaps = 10/582 (2%) Strand=Plus/Minus Query 42799 CCGATTTGTTCTGTGGAGCTGGAGGCTCGTCGACCGGAGCCGTCGCGATCCCGGGCGTCA 42858 |||| || ||||| || || || || || || |||||||| ||| |||| |||||| Sbjct 4463 CCGACTTCTTCTGCGGTGCCGGCGGATCCTCCACCGGAGCACTCGACGTCCCCGGCGTCG 4404 Query 42859 CCGTGAAGATCGCGGCGAACCACTGGGACCTCGCGATCGCCACGCACAATACGAATCACC 42918 ||| ||| || | ||||||||| ||||| ||| || ||| | | |||| Sbjct 4403 ACGTCCGCGCCGCCGCCACCCACTGGGATCTCGCCGTCGAAACCCACCAGCGCCACCACC 4344 Query 42919 CCGACGCGGACCACCTCTGCGCGGACCTATCGCAGATCGATCCCCGGTACTTCCCGACGA 42978 | ||||| || ||| ||||||| ||| | ||| ||| || | | ||||| | Sbjct 4343 CGGACGCCGAACACATCTGCGCCGACATCAGCCAGTACGAGCCGAGCTTGTTCCCCCACA 4284 Query 42979 CCGACATCCTGTGGGCGTCACCCGAGTGCACCAATCACTCGGTGGCGAAGGGCCGCAAAC 43038 | ||| || ||| || ||| ||||||| ||| |||||||| ||||| | Sbjct 4283 CGGACCTCGCCTGGTTCTCCCCCTCCTGCACCAGCCACACGGTGGCGCAGGGCATGGCCC 4224 Query 43039 GAGTTG--CTG--CGCAGCCTGATCTCTTCGATGAGGTGC---TGCCCGACGCGGCGGCC 43091 | | | | | ||| |||| | || ||| || | | ||||||| ||| | Sbjct 4223 GTGCCGACCGGGCCGCCGCCT-ACGTCCTCGGAGAAACCCCCCTCCCCGACGACGCGCAC 4165 Query 43092 GAGAGATCGAGAGCGACGATGTGGGACGTCCCGCGGTTCGCCGAGGTCCACCAGTACCGC 43151 || |||| | || || ||||||||||| ||| ||| ||||| |||||| ||| | Sbjct 4164 GAACGATCCCGCGCCACCATGTGGGACGTGGTGCGCTTCACCGAGTACCACCACTACGCC 4105 Query 43152 GCCGTGATCGTCGAGAACGTTGTCGACGCGTTCCACTGGGTTCCGTTCCGCGCGTGGCTG 43211 || || || ||||||||||| ||| | | | |||| || |||| ||||||| | Sbjct 4104 GCGGTCATTGTCGAGAACGTCACCGAGGTCACCAAGTGGGCGCCATTCCCCGCGTGGATC 4045 Query 43212 ATGGCGATGGACTGCCTCGGCTACGACCACCACATCGTCATGCTCAACTCGATGCACGCC 43271 ||||||||||| ||||||||| | |||| ||| |||||||||||| ||||||||| Sbjct 4044 ATGGCGATGGAAGCGCTCGGCTACAAGCACCGCATTGTCATGCTCAACAGCATGCACGCC 3985 Query 43272 CAGACGTTCGGGCCGGGGGCGCCGCAGTCCCGCGACCGGATGTACGTCGTGTTCTGGCAC 43331 || ||| || | || |||| |||||||||||| | ||| |||||||||||| Sbjct 3984 GGCCTGTACGGCCCCGCCGCCGCGCAATCCCGCGACCGGTTCTACTGCGTGTTCTGGCAG 3925 Query 43332 AAGGGCAATCCGCG-CCCGGACCTCGGCCGCGTGGTCCGCCC 43372 | | ||| || |||||| |||| | ||| ||| |||| Sbjct 3924 CCCGAC-ATCACCGACCCGGATCTCGACGCCGTCGTCAGCCC 3884 Score = 114 bits (126), Expect = 4e-21 Identities = 136/182 (75%), Gaps = 2/182 (1%) Strand=Plus/Minus Query 43873 CGTTCATGGCCGAACTGCGCGGCGGCGGATCGAAGCACCGGCGCGTCTCG-GATCCGCTC 43931 ||||||| || ||||| ||||||||||| | |||||| | | | | ||||| || Sbjct 3612 CGTTCATCGCGGAACTCCGCGGCGGCGGCA-GTAGCACCCGGTCTGCCCACGATCCCCTG 3554 Query 43932 TCCACGGTCACCGCGTCGGGCAACCACCACGGCCTCGTGACGACCTACTACGGGAAGGGC 43991 ||||| ||||| || || || | |||||| ||||| || | | | |||||||| || ||| Sbjct 3553 TCCACCGTCACAGCATCCGGAACCCACCATGGCCTGGTCATGTCGTACTACGGCAACGGC 3494 Query 43992 AGCGCGCAGTCGACGGACGCGCCGCTGCCGACCGTCACGACGGTCGAGAAGCACGCACTC 44051 | ||||| | || | | |||| ||||||||||||| || || |||||||| || ||| Sbjct 3493 ACAACGCAGACCACTGGCCGGCCGATGCCGACCGTCACCACCGTGGAGAAGCAGGCGCTC 3434 Query 44052 CT 44053 || Sbjct 3433 CT 3432 >SEQ30131 Length=2206 Score = 109 bits (120), Expect = 2e-19 Identities = 256/377 (68%), Gaps = 17/377 (5%) Strand=Plus/Plus Query 46524 GAAGGAGGGTTCA--TGAGAATCCGGGCAACGAAGCCAGAGTTCTGGCGCTCCAAGACGA 46581 ||||||||| || |||| ||| | | |||||||| ||||||||| | || ||||||| Sbjct 1673 GAAGGAGGGGACAGGTGAGGATCAGATCGACGAAGCCGGAGTTCTGGAGTTCGAAGACGA 1732 Query 46582 TCGCCACCCTCGACTGGGATACCCGCCTCGTCCTGAAGGCGCTGGAGTCCTACGTCGACG 46641 | || | ||||||||||| | || || ||||| |||| || ||| ||| ||||| | Sbjct 1733 TAGCGGCTGTCGACTGGGATGCGCGTCTGGTCCTCAAGGGACTTGAGAGCTATGTCGATG 1792 Query 46642 ACAACGGCGT----CGGGAAGGACTCGGTCGTCATCTTCTGCGCGGACGCCTTCCCCCAC 46697 |||| || || ||||| | | | || | ||| ||| |||| | ||| | | Sbjct 1793 ACAATGGTGTGGGCCGGGATGACATTGCTC-TGATCGTCT---CGGAAGTGTTCGTTCGC 1848 Query 46698 GACC---TCGCGAACTCTCCCGAAATCTG-CGCGAAGGTTTCGCGCAGTC-TCTCCCGGT 46752 |||| |||||| ||| ||| | ||| ||||| ||| || || || | | |||| | Sbjct 1849 GACCATTTCGCGAGGCCTCGCGAGA-CTGTCGCGAGGGTGTC-CGAAGCCATTTCCCAGC 1906 Query 46753 TGTCCGAGGCCGGTCTCATTGCGCGCTACAACGTCGATGGCGAAGACCTGGTGTACGTGC 46812 || | || ||||||||| | | | ||| | | |||||| | || || | ||| | Sbjct 1907 TGACTGAAGCCGGTCTCCTATGGAGATACGAGGCCGATGGTAATGAATTGATATACATTT 1966 Query 46813 GCAACTGGAAGAAGTGGCAGTACATCGACAAGCCGAAGGCGGGACGCCACCCGAGACCCG 46872 |||||| | | || ||||||||||| || ||||| ||| || || | Sbjct 1967 CGAACTGGGACAGCCTCCAACGAATCGACAAGCCAAACAAAGGACGTTTCCCCAGGCCAG 2026 Query 46873 ACGGCACCATGAACTAC 46889 ||||||| ||||||||| Sbjct 2027 ACGGCACAATGAACTAC 2043 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 166433628192390