Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20nasuta_20[genbank_20GCA_5F002222885.1_202017-07-20] 46,105 sequences; 137,224,182 total letters Query= NC_031099.1 Length=44536 Score E Sequences producing significant alignments: (Bits) Value SEQ24884 230 7e-56 SEQ27525 96.9 1e-15 >SEQ24884 Length=1939 Score = 230 bits (254), Expect = 7e-56 Identities = 312/428 (73%), Gaps = 14/428 (3%) Strand=Plus/Minus Query 19943 CGGCGATGAACAACGCGATGATCGCCGC-GGGCTGC--ACCACGTTGAACCGGGCGGCGA 19999 ||||| | || ||||||| ||||||| ||| || ||| || || ||||||||| Sbjct 1490 CGGCGTTCAATGCCGCGATGGTCGCCGCCGGGGTGACTACCGCGCTG---CGGGCGGCGC 1434 Query 20000 TGTGGTGCGCGCAGATCGGGCACGAATCCGCAGGCCTGGTCTACATGGAAGAGATCGACG 20059 ||||||||||||||||| ||||| || || || || |||||||| || ||| || Sbjct 1433 ACTGGTGCGCGCAGATCGGTCACGAGTCGGCGGGACTCCGGTACATGGAGGAACTCGCCG 1374 Query 20060 ACGGGCAGCGGTACAACGGGCGAGCGGATCTCGGCAACACACAGCCCGGAGATGGGCCGC 20119 |||| | ||| | ||||| | || ||||||||||| |||||||| ||||||| | Sbjct 1373 ACGGCTCGGCCTACGAGGGGCGCTCCGACCTCGGCAACACGCAGCCCGGTGATGGGCAGA 1314 Query 20120 GCTACAAGGGGTCTGGTCCGATCCAGCTGACCGGCCGCAGCAACTTCCGCGAGTTCTCGC 20179 | | ||||||||| || ||||||||||| ||||| || |||||||| | |||| | | Sbjct 1313 GGTTCAAGGGGTCCGGCCCGATCCAGCTCACCGGGCGGGCGAACTTCCGGGCGTTCACTC 1254 Query 20180 GGT-GGTGCTTCTCGAAGGGCTGGACACCGACGCCGCGCTATTTCGAGGACATGCCGTAT 20238 ||| || || | | |||| | ||||||| | | ||||||| |||| | Sbjct 1253 GGTGGGCGCAGC-AGCAGGGAT--TCACCGAC----CTGGACTTCGAGGCGCAGCCGGAG 1201 Query 20239 CTCGTTCGCGAGGAACCGAAGTGGGGGTTCCTCGCGGCGTCCTGGTATTGGACCGTCGCC 20298 || || ||| ||| || ||||||||||||||| ||||||||||| ||||| |||||| Sbjct 1200 CTGGTGCGCTCGGATCCACGGTGGGGGTTCCTCGCCGCGTCCTGGTACTGGACGGTCGCC 1141 Query 20299 CGCCCGGGCATCAACGCGATGTGCGATCGGCAGGACGTTCACGGCGTCACCAAGGCGATC 20358 |||||| | |||||||| ||||||| | | || || | ||||||| | ||||| Sbjct 1140 CGCCCGAACCTCAACGCGCAGTGCGATGCGGATGATGTCGTGGCCGTCACCCGGTCGATC 1081 Query 20359 AACGGCGG 20366 |||||||| Sbjct 1080 AACGGCGG 1073 >SEQ27525 Length=13899 Score = 96.9 bits (106), Expect = 1e-15 Identities = 184/260 (71%), Gaps = 21/260 (8%) Strand=Plus/Minus Query 3086 GCGTCAGGCGATCGAGTACCACGACAAGCAGATGGCTCTCGCCGCGCTCGCGCACTTCCT 3145 |||| ||||||||| ||||||||| | |||||| || | ||| ||||||||||| Sbjct 9813 GCGTGAGGCGATCGCCTACCACGACTCGATGATGGCGAAGGCGGTGCTGGCGCACTTCCT 9754 Query 3146 GAACCTTGA---CAAGGGCGGATCGTACGCTCTCGCTTCGGTTCTCAAGTCG---CCGTT 3199 ||||||||| ||||||||| || ||||| || | ||| | ||||| | ||| Sbjct 9753 GAACCTTGAGGGCAAGGGCGGCTCCTACGCCCTGG---CGGAGACCCAGTCGGATCTGTT 9697 Query 3200 CGACCAGTCGCTGGGGTCGATCGCCGACGGGGTTCGCTCGACAGC-CCAGGC-GCACGTC 3257 | |||||||||| | | ||||| ||| || | || |||| | ||| | |||| || Sbjct 9696 CATCCAGTCGCTGCAGACCATCGCGGAC-TGGATAGC-GGACACCGCCACCCAGCACATC 9639 Query 3258 CTCGAGGACCTCGTGGACGTCAACTGGGGACCGGATAT-----GCCGGCGCCGCGGCTCG 3312 | || |||||||| ||| || || |||||||| | |||||||||| ||| Sbjct 9638 GTGGAAGACCTCGTTGACATC-GCT-TTCCCCGGATATGAGGGGGTGGCGCCGCGGATCG 9581 Query 3313 TGTTCGACGAGATCGGCCAG 3332 || ||||| |||| ||||| Sbjct 9580 TGGTCGACCCGATC-GCCAG 9562 Score = 86.0 bits (94), Expect = 2e-12 Identities = 310/480 (65%), Gaps = 24/480 (5%) Strand=Plus/Minus Query 4039 GAGCTGCTGATCTATGACGAGATCGATCCGTTCTGGGGCGTCGCCGCCGCGGAGCTGGTC 4098 |||||||||||||| | ||||||| |||| ||| || || || ||||| Sbjct 9232 GAGCTGCTGATCTACGGAGAGATCG------GGTGGGAGGTCAACGACGGCGACGTGGTC 9179 Query 4099 CGCGAGCTCGCGCGGATCGACGCCGACCGCGAGCTGAAGGTGCGCATCAACTCGCCCGGC 4158 || || ||||| || | || ||| || || | || ||||||||| ||||| Sbjct 9178 CGACAGATCGCGGACATGGCCGGCGA---AGACCTCACTGTCCGCATCAACAGCCCCGGT 9122 Query 4159 GGTGACGTCTACGAGGGCATCGCGATCCTCAACGCGCTCCGCGGCCGCGACGGCAAAGTC 4218 || || |||||| |||| | |||||| | |||||||| || || |||||||| || Sbjct 9121 GGCGATGTCTACCAGGGGCTGGCGATCATGAACGCGCTGCGATCCCACGACGGCACGGTG 9062 Query 4219 ACCACCGTCGTCGACGGCCTCGCTGCGTCGATTGCCAGCGTCATTGC-GATGGC--CGGA 4275 ||| | || || || ||| | || || ||| || | |||| || | ||| || Sbjct 9061 ACCGCGGTGGTGGAGGGCATGGCCGCATCGGCAGCATCCTTCATCGCTGTCGGCGGCGCG 9002 Query 4276 TCCGAGATCGTCATGATGCCGAACTCGGAGATGATGATTCACGATCCGTGGATGCTGACC 4335 ||| | || ||| || | | ||||| | ||||| ||||| | |||| | Sbjct 9001 TCCCGTGTGGTGATGCGCCCCACCGCGGAGCTAATGATCCACGAAGC---GATGTCTTTC 8945 Query 4336 ATCGGCG---ATGCCGAGGACATGCAGACCGCGGCTGACAATCTCGGTCGCATTGCCGAC 4392 |||||| | |||| ||| ||||||| ||| || |||| | || || | | Sbjct 8944 GTCGGCGGGAACGCCGGGGAGATGCAGAAGGCGATCGAGGATCTGGACCGGATCTCTGCG 8885 Query 4393 AATCTCGCCTCGATCTACGCCGACCGCACCGGCGGTACGGCCGAGGAGTGGCG---AGCG 4449 || || ||| ||||| || || ||| | ||||| | | ||| ||||||| ||| Sbjct 8884 AACCTGGCCGGCATCTATGCGGAGCGCGCTGGCGGCGAGCCGGAGCAGTGGCGTGACGCG 8825 Query 4450 ATCATGCGCGCCGAAACCTGGTACACCGCGGCCGAAACCGTCGAGGCCGGGCTCGCCGAC 4509 || | | || || || ||||| | ||| || |||| || || |||||||| ||| Sbjct 8824 ATGAAG---GCGGAGACGTGGTATTCGGCGCAGGAGGCCGTGGATGCGGGGCTCGCTGAC 8768 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 142315639948980