Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20nasuta_20[genbank_20GCA_5F002222885.1_202017-07-20] 46,105 sequences; 137,224,182 total letters Query= NC_031118.1 Length=54167 Score E Sequences producing significant alignments: (Bits) Value seq6253 248 3e-61 SEQ27525 125 2e-24 >seq6253 Length=4700 Score = 248 bits (274), Expect = 3e-61 Identities = 388/550 (71%), Gaps = 10/550 (2%) Strand=Plus/Minus Query 46392 CCTGACCCTCACCGACCTGTTCTGTGGCGCCGGCGGCTCGTCGACCGGAGCGGTCGACAT 46451 ||| |||||| ||||| | ||||| || |||||||| || || |||||||| ||||| | Sbjct 4474 CCTCACCCTCTCCGACTTCTTCTGCGGTGCCGGCGGATCCTCCACCGGAGCACTCGACGT 4415 Query 46452 CCCCGGCGTCACCGTCCGGATCGCCTCGAATCACTGGGACCTCGCAGTCGAGACCCACAA 46511 |||||||||| |||||| |||| | | |||||||| ||||| ||||| |||||| | Sbjct 4414 CCCCGGCGTCGACGTCCGCGCCGCCGCCACCCACTGGGATCTCGCCGTCGAAACCCACCA 4355 Query 46512 CAGCAACCACCCCGACGCCGACCACCTATGCGCGGACCTGTCGCAGATCGATCCCCGATA 46571 || ||||||| |||||||| ||| | ||||| ||| | ||| ||| || | | Sbjct 4354 GCGCCACCACCCGGACGCCGAACACATCTGCGCCGACATCAGCCAGTACGAGCCGAGCTT 4295 Query 46572 CTTCCCGACGACCGACATCCTGTGGGCGTCGCCCGAGTGCACGAATCACTCGGTGGCGAA 46631 ||||| || ||| || ||| || ||| ||||| | ||| |||||||| | Sbjct 4294 GTTCCCCCACACGGACCTCGCCTGGTTCTCCCCCTCCTGCACCAGCCACACGGTGGCGCA 4235 Query 46632 GGGCC--GCAAA---CGAGTTGGCTCACAGCCCGATCTCTTCGGCGAGATCC---TTCCG 46683 |||| || ||| ||| | | ||| | || |||| || | || | || Sbjct 4234 GGGCATGGCCCGTGCCGACCGGGC-CGCCGCCT-ACGTCCTCGGAGAAACCCCCCTCCCC 4177 Query 46684 GACGCGGCGTCGGAGCGGTCCCGCGCGACCATGTGGGACGTCCCGCGGTTCGCCGAGGTC 46743 |||| ||| || || |||||||| |||||||||||||| ||| ||| ||||| | Sbjct 4176 GACGACGCGCACGAACGATCCCGCGCCACCATGTGGGACGTGGTGCGCTTCACCGAGTAC 4117 Query 46744 CACCAGTACCGCGCCGTGATCGTCGAGAACGTCGTCGACGCGTTCCACTGGGTTCCGTTC 46803 ||||| ||| ||| || || |||||||||||| ||| | | | |||| || ||| Sbjct 4116 CACCACTACGCCGCGGTCATTGTCGAGAACGTCACCGAGGTCACCAAGTGGGCGCCATTC 4057 Query 46804 CGCGCCTGGCTGATGGCGATGGACTGCCTCGGCTACGACCACCACATCGTCATGCTCAAC 46863 | ||| ||| | ||||||||||| ||||||||| | |||| ||| |||||||||||| Sbjct 4056 CCCGCGTGGATCATGGCGATGGAAGCGCTCGGCTACAAGCACCGCATTGTCATGCTCAAC 3997 Query 46864 TCGATGCACGCCCAGACATTCGGCCCCGGGGCGCCGCAGTCCCGAGATCGCATGTACGTC 46923 ||||||||| | |||||||| || |||| ||||| || || | ||| | Sbjct 3996 AGCATGCACGCCGGCCTGTACGGCCCCGCCGCCGCGCAATCCCGCGACCGGTTCTACTGC 3937 Query 46924 GTGTTCTGGC 46933 |||||||||| Sbjct 3936 GTGTTCTGGC 3927 Score = 95.1 bits (104), Expect = 4e-15 Identities = 133/184 (72%), Gaps = 2/184 (1%) Strand=Plus/Minus Query 47477 CGTTCATCGCCGAGCTCCGCGGCGGCGGGTCGAAGCA-CCGGCCCGTGTCGGATCCGCTC 47535 |||||||||| || |||||||||||| || | |||| |||| | | ||||| || Sbjct 3612 CGTTCATCGCGGAACTCCGCGGCGGC-GGCAGTAGCACCCGGTCTGCCCACGATCCCCTG 3554 Query 47536 AGCACGGTCACCGCGTCGGGCAACCATCACGGCCTGGTTACGACCTACTACGGGAAGGGT 47595 ||| ||||| || || || | ||| || |||||||| | | | |||||||| || || Sbjct 3553 TCCACCGTCACAGCATCCGGAACCCACCATGGCCTGGTCATGTCGTACTACGGCAACGGC 3494 Query 47596 GGCGCCCAGTCGACGGACGCGCCGCTGCCGACGGTCACGACGGTCGAGAAGCACGCACTC 47655 | ||| | || | | |||| ||||||| ||||| || || |||||||| || ||| Sbjct 3493 ACAACGCAGACCACTGGCCGGCCGATGCCGACCGTCACCACCGTGGAGAAGCAGGCGCTC 3434 Query 47656 CTGA 47659 |||| Sbjct 3433 CTGA 3430 >SEQ27525 Length=13899 Score = 125 bits (138), Expect = 2e-24 Identities = 183/257 (71%), Gaps = 9/257 (4%) Strand=Plus/Minus Query 2876 GCGATCGCCTACCACGACAACATGATCGCGATCGCCGGTCTCGCGCACTTCCTCAACCTC 2935 |||||||||||||||||| ||||| |||| || | || ||||||||||| ||||| Sbjct 9806 GCGATCGCCTACCACGACTCGATGATGGCGAAGGCGGTGCTGGCGCACTTCCTGAACCTT 9747 Query 2936 GAGGGCGGCGGCGGGTCGTACGCGCTGGC---GAGCGTGCAGGAACACACCTTCACCCAG 2992 |||||| ||||| || ||||| ||||| || | | ||| | |||| |||| Sbjct 9746 GAGGGCAAGGGCGGCTCCTACGCCCTGGCGGAGACCCAGTCGGATC---TGTTCATCCAG 9690 Query 2993 TCGGTGCAGACGACCGCCGAATGGATCCGCGACACCGCGACCGCCCACATCGTCGAGGAC 3052 ||| ||||||| | ||| || ||||| |||||||| ||| |||||||| || ||| Sbjct 9689 TCGCTGCAGACCATCGCGGACTGGATAGCGGACACCGCCACCCAGCACATCGTGGAAGAC 9630 Query 3053 CTCGTCGACATCAACTT---CGGCGTCGACGAACCAGCACCCCGGATCGTGTTCGACGAG 3109 ||||| |||||| || ||| || | || || ||||||||| ||||| | Sbjct 9629 CTCGTTGACATCGCTTTCCCCGGATATGAGGGGGTGGCGCCGCGGATCGTGGTCGACCCG 9570 Query 3110 ATCGGCAGCCGGCAGGA 3126 |||| |||| | |||| Sbjct 9569 ATCGCCAGCAAGAAGGA 9553 Score = 109 bits (120), Expect = 2e-19 Identities = 260/386 (67%), Gaps = 13/386 (3%) Strand=Plus/Minus Query 3604 GTGCGGATCAACTCTCCCGGCGGCGACGTCTACGACGCGATCGCCATCACCAACGCGCTG 3663 || || |||||| ||||| ||||| |||||| | | | | || |||| ||||||||| Sbjct 9142 GTCCGCATCAACAGCCCCGGTGGCGATGTCTACCAGGGGCTGGCGATCATGAACGCGCTG 9083 Query 3664 CGCAACCACGACGCGACGATCACCGTCCAGGTCGACGGTCTCGCCGCGTCGGCGGCCAGC 3723 || |||||||| ||| | |||| ||| || || | ||||| ||||| || | Sbjct 9082 CGATCCCACGACGGCACGGTGACCGCGGTGGTGGAGGGCATGGCCGCATCGGCAGCATCC 9023 Query 3724 TTCATCGCGATGGCCGGCG---ACGAGGTGGTGATGTGCCGCAACACCGAGATGATGATC 3780 |||||||| | | ||||| | ||||||||| ||| || | | ||| | |||||| Sbjct 9022 TTCATCGCTGTCGGCGGCGCGTCCCGTGTGGTGATGCGCCCCACCGCGGAGCTAATGATC 8963 Query 3781 CATGACGCCCGTGGC-TTCTGCATCGGCAACGCCACCGACATGGCCGAGTACG-CCGAGT 3838 || || | | || | ||| | ||| |||||| || || || || || |||| Sbjct 8962 CACGAAG-CGATGTCTTTCGTCGGCGGGAACGCCGGGGAGAT-GCAGAAGGCGATCGAGG 8905 Query 3839 GGCTCGGCCGCGCGAGC---GACAACATCGCCTCGATGTACGCCGAGAAGACCGGCGGTG 3895 || | ||| || | | ||| | ||| || || || ||| | ||||| | Sbjct 8904 ATCTGGACCG---GATCTCTGCGAACCTGGCCGGCATCTATGCGGAGCGCGCTGGCGGCG 8848 Query 3896 AGGTGAAGGACTGGCGCAAGGCGATGACGGCCGAGACCTGGTACACGGCGGAGGAAGCCG 3955 || | || | ||||| | ||||||| ||| ||||| ||||| ||||| |||| |||| Sbjct 8847 AGCCGGAGCAGTGGCGTGACGCGATGAAGGCGGAGACGTGGTATTCGGCGCAGGAGGCCG 8788 Query 3956 TCGAGGCGGGTCTCGCCGACAAGGTG 3981 | || ||||| ||||| ||| |||| Sbjct 8787 TGGATGCGGGGCTCGCTGACGCGGTG 8762 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 173117966533290