Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20nasuta_20[genbank_20GCA_5F002222885.1_202017-07-20] 46,105 sequences; 137,224,182 total letters Query= NC_031226.1 Length=53717 Score E Sequences producing significant alignments: (Bits) Value seq6253 208 3e-49 SEQ27525 143 9e-30 SEQ30131 109 2e-19 >seq6253 Length=4700 Score = 208 bits (230), Expect = 3e-49 Identities = 374/539 (69%), Gaps = 12/539 (2%) Strand=Plus/Minus Query 44746 GACCTCTTTTGCGGGGCTGGCGGTTCCAGCACTGGGGCGATTCAGATTCCAGGAGT-GAC 44804 ||| |||| ||||| || ||||| ||| ||| || || | | | || || || ||| Sbjct 4461 GACTTCTTCTGCGGTGCCGGCGGATCCTCCACCGGAGCACTCGACGTCCCCGGCGTCGAC 4402 Query 44805 TGTCCGGATCGCCTCGAATCACTGGGATCTCGCTGTCGAGACCCACAACTCGAATCACCC 44864 ||||| |||| | | |||||||||||||| ||||| |||||| | | ||||| Sbjct 4401 -GTCCGCGCCGCCGCCACCCACTGGGATCTCGCCGTCGAAACCCACCAGCGCCACCACCC 4343 Query 44865 CGACGCAGACCATCTGTGCGCGGACCTCTCGCAGATCGATCCCCGCTACTTCCCGTCGAC 44924 ||||| || || | ||||| ||| || ||| ||| || ||| ||||| || Sbjct 4342 GGACGCCGAACACATCTGCGCCGACATCAGCCAGTACGAGCCGAGCTTGTTCCCCCACAC 4283 Query 44925 CGACATCCTGTGGGCCTCCCCCGAGTGCACCAACCACTCGGTGGCGAAGGGCC--GCAAA 44982 ||| || ||| ||||||| ||||||| |||| |||||||| ||||| || Sbjct 4282 GGACCTCGCCTGGTTCTCCCCCTCCTGCACCAGCCACACGGTGGCGCAGGGCATGGCCCG 4223 Query 44983 ---CGAGTTGGCTCGCAGCCCGACCTGTTCGGCGAGATCC---TGCCCGACGCTGCATCG 45036 ||| ||| ||| ||| || | |||| || | || | ||||||| || Sbjct 4222 TGCCGACCGGGC-CGCCGCCT-ACGTCCTCGGAGAAACCCCCCTCCCCGACGACGCGCAC 4165 Query 45037 GAGCGGTCCCGAGCCACCATGTGGGACGTCCCGCGGTTCGCCGAGGTCCACCAGTACCGC 45096 || || ||||| ||||||||||||||||| ||| ||| ||||| |||||| ||| | Sbjct 4164 GAACGATCCCGCGCCACCATGTGGGACGTGGTGCGCTTCACCGAGTACCACCACTACGCC 4105 Query 45097 GCCGTGATCGTCGAGAACGTCGTCGACGCGTTCCACTGGGTTCCGTTCCGCGCGTGGCTG 45156 || || || |||||||||||| ||| | | | |||| || |||| ||||||| | Sbjct 4104 GCGGTCATTGTCGAGAACGTCACCGAGGTCACCAAGTGGGCGCCATTCCCCGCGTGGATC 4045 Query 45157 ATGGCGATGGACTGCCTCGGCTACGACCACCACATCGTCATGCTCAACTCGATGCACGCC 45216 ||||||||||| ||||||||| | |||| ||| |||||||||||| ||||||||| Sbjct 4044 ATGGCGATGGAAGCGCTCGGCTACAAGCACCGCATTGTCATGCTCAACAGCATGCACGCC 3985 Query 45217 CAGACATTCGGGCCCGGGGCGCCGCAGTCTCGCGACCGCATGTATGTCGTGTTCTGGCA 45275 | ||| |||| || |||| || |||||||| | || |||||||||||| Sbjct 3984 GGCCTGTACGGCCCCGCCGCCGCGCAATCCCGCGACCGGTTCTACTGCGTGTTCTGGCA 3926 >SEQ27525 Length=13899 Score = 143 bits (158), Expect = 9e-30 Identities = 376/563 (67%), Gaps = 27/563 (5%) Strand=Plus/Minus Query 582 CTGATCGTTCCGCGGCAGAACGGCAAGTCGCTGATCCT---GGTGATCCGCGTGCTGTAC 638 |||||| |||||||||||||||||||| |||||||| ||||||| | || ||| Sbjct 11961 CTGATCTGCCCGCGGCAGAACGGCAAGTCTCTGATCCTCGAGGTGATCATC---CTCTAC 11905 Query 639 GGGCTGTTCAAGCTCGGCGAGAACATCGTCTTCTCGGCGCACCAGTGGGAGACCGCGAAG 698 | || |||| || || | ||| ||||| ||||||| |||||| ||| |||||| Sbjct 11904 CGCCTATTCATCCTGCATCAGCAGATCATCTTCACGGCGCAGCAGTGGCGGACGGCGAAG 11845 Query 699 TCGCTGTGGAAGCGGGCCTGGGCGATCGTGAAGACGACGCCGTGGCTGAACAAGCTCGTC 758 ||| | |||| || ||| | | | ||| || | |||| | | |||| Sbjct 11844 TCGATCCGGAACCGACTGTGGAAGCGCATCAAGTCGCGGAAGTGGGCGGAG-----CGTC 11790 Query 759 GAGTCGCAC-ACCTGCAGCCAGGGCCGC---GGCAC-GATCGAGCTGAC-GACTGGGGCG 812 || | | | | | | || ||||| ||| ||| ||| | ||| |||| | Sbjct 11789 GACTGGTCCGAAATACGGCGTCGGCCGGTGAGGCTGAGATGGAGACCAGTGACGGGGG-G 11731 Query 813 AAGGTGGTCTTCACGACCCGGTCGGCGAACGCCGGCCGTGGTCTGGACAAGGTCGATCTG 872 ||||| ||||||||||||||| |||| |||||||| | ||| || | |||||| Sbjct 11730 AAGGTCCAGTTCACGACCCGGTCGAACGACGCGGGCCGTGGCTTCGACCAGATAGATCTG 11671 Query 873 GTCATCTACGACGAGGCGTACGACCTGACCGAGGCCGACATGGCGGC--GC-TGTCGCCG 929 | || ||| ||||||||| ||||| ||||||| | | || || | ||||| Sbjct 11670 CTGCTCCTCGATGAGGCGTACAACCTG---GAGGCCGGCGAGCTGGACAGCATCACGCCG 11614 Query 930 ACGAAGATGGCCGCCGACGACCCGCAGACGATCTACACGTCGTCGGCGGTGAACCAGGAG 989 | || |||| || || ||||||||| ||||||||| ||||||||||| ||| Sbjct 11613 ATCCAGTTGGCGGCACCGGATCCGCAGACGTACTACACGTCCTCGGCGGTGAATCAGTCT 11554 Query 990 CAGCATCCGAACGGGCAGGTCCTCGCCGCGGTCCGGGAACGTCTGCTGGCCGGCGAG--- 1046 | ||||||||| || || || | |||||| || ||| |||||||| ||| Sbjct 11553 CGGCATCCGAAGGGCGTGGAGCTGTCTCGGGTCCGTGACCGTGCTCTGGCCGGTGAGGCT 11494 Query 1047 GAAGGCCTGTTCGGCGCGGAGTGGATGGCGCCGGAGGAGCTCGACCGGTCGGAGCCGTCG 1106 || ||| || || | | |||| ||||||||| | | |||| | || ||| | Sbjct 11493 GAGGGCATGCTCTACTCCGAGTTCCGGGCGCCGGATGGGGCGGACCCTGCTGACCCGGAG 11434 Query 1107 ACGTGGCGGTGGGCGAACCCGTC 1129 || ||| || |||||||||||| Sbjct 11433 ACATGGAAGTTGGCGAACCCGTC 11411 Score = 104 bits (114), Expect = 8e-18 Identities = 137/190 (72%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 2805 GGCGATCGCGTACCACGACAACATGATCGCGATCGCCGGTCTCGCGCACTTCCTCAACCT 2864 ||||||||| ||||||||| ||||| |||| || | || ||||||||||| ||||| Sbjct 9807 GGCGATCGCCTACCACGACTCGATGATGGCGAAGGCGGTGCTGGCGCACTTCCTGAACCT 9748 Query 2865 CGAGGGCGGCGGCGGATCGTATGCGCTCGCGAGCGTCCAGGAACACACCTTCACCCAATC 2924 |||||| ||||| || || || || ||| |||| | |||| ||| || Sbjct 9747 TGAGGGCAAGGGCGGCTCCTACGCCCTGGCGGAGACCCAGTCGGATCTGTTCATCCAGTC 9688 Query 2925 GGTGCAGACGACCGCCGAGTGGGTCCGCGACACCGCGACCGCCCACATCGTCGAGGACCT 2984 | ||||||| | ||| || ||| | |||||||| ||| |||||||| || ||||| Sbjct 9687 GCTGCAGACCATCGCGGACTGGATAGCGGACACCGCCACCCAGCACATCGTGGAAGACCT 9628 Query 2985 CGTCGACATC 2994 ||| |||||| Sbjct 9627 CGTTGACATC 9618 Score = 100 bits (110), Expect = 1e-16 Identities = 253/380 (67%), Gaps = 6/380 (2%) Strand=Plus/Minus Query 3459 GTGCGCATCAACTCGCCCGGCGGCGACGTGTACGACGCGCTGGCCATCACCAACGCGCTG 3518 || ||||||||| ||||| ||||| || ||| | | |||||| |||| ||||||||| Sbjct 9142 GTCCGCATCAACAGCCCCGGTGGCGATGTCTACCAGGGGCTGGCGATCATGAACGCGCTG 9083 Query 3519 CGCAATCACGACGCGACGGTGACGGTGCAGGTCGACAGCCTCGCCGCCAGCGCAGCCAGC 3578 || ||||||| |||||||| | | ||| || || | ||||| ||||| | Sbjct 9082 CGATCCCACGACGGCACGGTGACCGCGGTGGTGGAGGGCATGGCCGCATCGGCAGCATCC 9023 Query 3579 TTCATCGCGATGGCCGGCG---ACGAGGTCGTGATGTGCCGCAACTCCGAGCTGATGATC 3635 |||||||| | | ||||| | || |||||| ||| || | | ||||| |||||| Sbjct 9022 TTCATCGCTGTCGGCGGCGCGTCCCGTGTGGTGATGCGCCCCACCGCGGAGCTAATGATC 8963 Query 3636 CACGACGCCCGCGGCTTCTGCATCGGCAGCGCCACCGACATGGCTGAGTACG-CCGAATG 3694 ||||| || ||| | ||| | |||| || || || || || ||| Sbjct 8962 CACGAAGCGATGTCTTTCGTCGGCGGGAACGCCGGGGAGAT-GCAGAAGGCGATCGAGGA 8904 Query 3695 GCTCGGCCGCGCGAGTGACAACATCGCGTCGATCTACGCCGAGAAGACCGGCGGCGACGC 3754 || | ||| || ||| | || ||||| || ||| | |||||||| | Sbjct 8903 TCTGGACCGGATCTCTGCGAACCTGGCCGGCATCTATGCGGAGCGCGCTGGCGGCGAGCC 8844 Query 3755 CAAGGACTGGCGCAAGGCGATGAAGGCCGAAACCTGGTACACGGCGGACGAAGCCGTCGA 3814 || | ||||| | ||||||||||| || || ||||| ||||| | || ||||| || Sbjct 8843 GGAGCAGTGGCGTGACGCGATGAAGGCGGAGACGTGGTATTCGGCGCAGGAGGCCGTGGA 8784 Query 3815 AGCCGGGCTCGCCGATCGCG 3834 || |||||||| || |||| Sbjct 8783 TGCGGGGCTCGCTGA-CGCG 8765 >SEQ30131 Length=2206 Score = 109 bits (120), Expect = 2e-19 Identities = 256/377 (68%), Gaps = 17/377 (5%) Strand=Plus/Plus Query 48408 GAAGGAGGGTTCA--TGAGAATCCGGGCAACGAAGCCAGAGTTCTGGCGCTCCAAGACGA 48465 ||||||||| || |||| ||| | | |||||||| ||||||||| | || ||||||| Sbjct 1673 GAAGGAGGGGACAGGTGAGGATCAGATCGACGAAGCCGGAGTTCTGGAGTTCGAAGACGA 1732 Query 48466 TCGCCACCCTCGACTGGGATACCCGCCTCGTCTTGAAGGCGCTGGAGTCCTACGTCGACG 48525 | || | ||||||||||| | || || ||| | |||| || ||| ||| ||||| | Sbjct 1733 TAGCGGCTGTCGACTGGGATGCGCGTCTGGTCCTCAAGGGACTTGAGAGCTATGTCGATG 1792 Query 48526 ACAACGGCGT----CGGGAAGGACTCGGTCGTGATCTTCTGCGCGGACGCCTTCCCGCAC 48581 |||| || || ||||| | | | || ||||| ||| |||| | ||| | | Sbjct 1793 ACAATGGTGTGGGCCGGGATGACATTGCTC-TGATCGTCT---CGGAAGTGTTCGTTCGC 1848 Query 48582 GACC---TCGCGAACTCTCCCGAAATCTG-CGCGAAGGTTTCGCGCAGTC-TCTCCCGGT 48636 |||| |||||| ||| ||| | ||| ||||| ||| || || || | | |||| | Sbjct 1849 GACCATTTCGCGAGGCCTCGCGAGA-CTGTCGCGAGGGTGTC-CGAAGCCATTTCCCAGC 1906 Query 48637 TGTCCGAGGCCGGTCTCATTGCGCGCTACAACGTCGATGGCGAAGACCTGGTGTACGTGC 48696 || | || ||||||||| | | | ||| | | |||||| | || || | ||| | Sbjct 1907 TGACTGAAGCCGGTCTCCTATGGAGATACGAGGCCGATGGTAATGAATTGATATACATTT 1966 Query 48697 GCAACTGGAAGAAGTGGCAGTACATCGACAAGCCGAAGGCGGGACGCCACCCGAGACCCG 48756 |||||| | | || ||||||||||| || ||||| ||| || || | Sbjct 1967 CGAACTGGGACAGCCTCCAACGAATCGACAAGCCAAACAAAGGACGTTTCCCCAGGCCAG 2026 Query 48757 ACGGCACCATGAACTAC 48773 ||||||| ||||||||| Sbjct 2027 ACGGCACAATGAACTAC 2043 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 171678754928790