Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20nasuta_20[genbank_20GCA_5F002222885.1_202017-07-20] 46,105 sequences; 137,224,182 total letters Query= NC_031233.1 Length=50346 Score E Sequences producing significant alignments: (Bits) Value seq6253 181 3e-41 SEQ30131 114 4e-21 >seq6253 Length=4700 Score = 181 bits (200), Expect = 3e-41 Identities = 365/539 (68%), Gaps = 8/539 (1%) Strand=Plus/Minus Query 42188 CCGATTTGTTCTGTGGAGCTGGAGGCTCGTCGACCGGAGCCGTCGCGATCCCGGGCGTCA 42247 |||| || ||||| || || || || || || |||||||| ||| |||| |||||| Sbjct 4463 CCGACTTCTTCTGCGGTGCCGGCGGATCCTCCACCGGAGCACTCGACGTCCCCGGCGTCG 4404 Query 42248 CCGTGAAGATCGCGGCGAACCACTGGGACCTCGCGATCGCCACGCACAATACGAATCACC 42307 ||| ||| || | ||||||||| ||||| ||| || ||| | | |||| Sbjct 4403 ACGTCCGCGCCGCCGCCACCCACTGGGATCTCGCCGTCGAAACCCACCAGCGCCACCACC 4344 Query 42308 CCGACGCGGACCACCTCTGCGCGGACCTATCGCAGATCGACCCCCGCTACTTCCCGACAA 42367 | ||||| || ||| ||||||| ||| | ||| ||| || ||| ||||| | Sbjct 4343 CGGACGCCGAACACATCTGCGCCGACATCAGCCAGTACGAGCCGAGCTTGTTCCCCCACA 4284 Query 42368 CCGACATCCTGTGGGCGTCGCCCGAGTGTACGAATCACTCGGTGGCGAAGGGC----CGC 42423 | ||| || ||| || ||| || || | ||| |||||||| ||||| | | Sbjct 4283 CGGACCTCGCCTGGTTCTCCCCCTCCTGCACCAGCCACACGGTGGCGCAGGGCATGGCCC 4224 Query 42424 AAGCGGGTTGGCTCACAGCCGGACCTGTTCGGCGAGATCC---TTCCGGACGCGGCGTCG 42480 || | || | | ||| || | |||| || | || | || |||| ||| Sbjct 4223 GTGCCGACCGGGCCGCCGCCT-ACGTCCTCGGAGAAACCCCCCTCCCCGACGACGCGCAC 4165 Query 42481 GAGCGGTCCCGCGCGACCATGTGGGACGTCCCGCGGTTCGCCGAGGTTCACCAGTACCGC 42540 || || |||||||| |||||||||||||| ||| ||| ||||| ||||| ||| | Sbjct 4164 GAACGATCCCGCGCCACCATGTGGGACGTGGTGCGCTTCACCGAGTACCACCACTACGCC 4105 Query 42541 GCCGTGATCGTCGAGAACGTTGTCGACGCGTTCCACTGGGTTCCGTTCCGCGCGTGGCTG 42600 || || || ||||||||||| ||| | | | |||| || |||| ||||||| | Sbjct 4104 GCGGTCATTGTCGAGAACGTCACCGAGGTCACCAAGTGGGCGCCATTCCCCGCGTGGATC 4045 Query 42601 ATGGCGATGGACTGCCTCGGCTACGACCACCACATCGTCATGCTGAACTCGATGCACGCC 42660 ||||||||||| ||||||||| | |||| ||| |||||||| ||| ||||||||| Sbjct 4044 ATGGCGATGGAAGCGCTCGGCTACAAGCACCGCATTGTCATGCTCAACAGCATGCACGCC 3985 Query 42661 CAGACGTTCGGGCCGGGGGCGCCGCAGTCCCGCGACCGCATGTACGTCGTGTTCTGGCA 42719 || ||| || | || |||| ||||||||||| | ||| |||||||||||| Sbjct 3984 GGCCTGTACGGCCCCGCCGCCGCGCAATCCCGCGACCGGTTCTACTGCGTGTTCTGGCA 3926 >SEQ30131 Length=2206 Score = 114 bits (126), Expect = 4e-21 Identities = 257/377 (68%), Gaps = 17/377 (5%) Strand=Plus/Plus Query 44871 GAAGGAGGGTTCA--TGAGAATCCGGGCAACGAAGCCAGAGTTCTGGCGCTCCAAGACGA 44928 ||||||||| || |||| ||| | | |||||||| ||||||||| | || ||||||| Sbjct 1673 GAAGGAGGGGACAGGTGAGGATCAGATCGACGAAGCCGGAGTTCTGGAGTTCGAAGACGA 1732 Query 44929 TCGCCACCCTCGACTGGGATACCCGCCTCGTCCTGAAGGCGCTGGAATCCTACGTCGACG 44988 | || | ||||||||||| | || || ||||| |||| || || ||| ||||| | Sbjct 1733 TAGCGGCTGTCGACTGGGATGCGCGTCTGGTCCTCAAGGGACTTGAGAGCTATGTCGATG 1792 Query 44989 ACAACGGCGT----CGGGAAGGACTCGGTCGTGATCTTCTGCGCGGACGCCTTCCCGCAC 45044 |||| || || ||||| | | | || ||||| ||| |||| | ||| | | Sbjct 1793 ACAATGGTGTGGGCCGGGATGACATTGCTC-TGATCGTCT---CGGAAGTGTTCGTTCGC 1848 Query 45045 GACC---TCGCGAACTCTCCCGAAATCTG-CGCGAAGGTTTCGCGCAGTC-TCTCCCGGT 45099 |||| |||||| ||| ||| | ||| ||||| ||| || || || | | |||| | Sbjct 1849 GACCATTTCGCGAGGCCTCGCGAGA-CTGTCGCGAGGGTGTC-CGAAGCCATTTCCCAGC 1906 Query 45100 TGTCCGAGGCCGGTCTCATTGCGCGCTACAACGTCGATGGCGAAGACCTGGTGTACGTGC 45159 || | || ||||||||| | | | ||| | | |||||| | || || | ||| | Sbjct 1907 TGACTGAAGCCGGTCTCCTATGGAGATACGAGGCCGATGGTAATGAATTGATATACATTT 1966 Query 45160 GCAACTGGAAGAAGTGGCAGTACATCGACAAGCCGAAGGCGGGACGTCACCCGAGACCCG 45219 |||||| | | || ||||||||||| || |||||| ||| || || | Sbjct 1967 CGAACTGGGACAGCCTCCAACGAATCGACAAGCCAAACAAAGGACGTTTCCCCAGGCCAG 2026 Query 45220 ACGGCACCATGAACTAC 45236 ||||||| ||||||||| Sbjct 2027 ACGGCACAATGAACTAC 2043 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 160897460887080