Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20nasuta_20[genbank_20GCA_5F002222885.1_202017-07-20] 46,105 sequences; 137,224,182 total letters Query= NC_031237.1 Length=49286 Score E Sequences producing significant alignments: (Bits) Value SEQ29447 201 4e-47 SEQ26880 98.7 3e-16 SEQ27525 93.3 1e-14 >SEQ29447 Length=7397 Score = 201 bits (222), Expect = 4e-47 Identities = 208/270 (77%), Gaps = 3/270 (1%) Strand=Plus/Minus Query 14897 ATCGGTGTCGCAACGGGTCTCGTCGAGTCGGGCGACCCGATGAAGATGTGGGCGAACAAC 14956 || ||||| || |||| || || |||||||| |||||||||||||||| || | ||| Sbjct 5650 ATTGGTGTGGCGACGGCACTGGTGGAGTCGGGTGACCCGATGAAGATGTACGCCAGCAAT 5591 Query 14957 GCGGTCCCTGAGTCGCTGAAGTTCCCGCACGACGAAGTGGGCTCCGACCACGACTCGATC 15016 ||||| || ||||||||||| | ||||||||||| | || |||||| || || ||| Sbjct 5590 GCGGTTCCGGAGTCGCTGAACTACCCGCACGACGCGATCGGGAGCGACCATGATTCCATC 5531 Query 15017 GGTCTGTTCCAGCAGCGGCAGGCAGGGTGGGGGACCGTCGCCGACCGGATGGATCCGCAC 15076 ||||||||||||||||| ||||| |||||||| |||||||| | || |||||||||||| Sbjct 5530 GGTCTGTTCCAGCAGCGTCAGGCCGGGTGGGGCACCGTCGCACAGCGTATGGATCCGCAC 5471 Query 15077 CGCTCGGCGGCGATGTTCTTCGACGCCCTGAT--GAAGGTTCCCG-GCTGGGAAACGATG 15133 | ||| ||||||| |||| ||| || | | | ||||||| |||| | ||||| Sbjct 5470 GACAGTGCGTCGATGTTTTTCGCCGCGATGCTGCGGAAGTTCCCGAACTGGCAGTCGATG 5411 Query 15134 GACATGGGTGCCGCGGCACAGGCGGTGCAG 15163 ||| || |||| ||| |||| |||||| Sbjct 5410 GACCCCGGCGCCGTGGCGCAGGGTGTGCAG 5381 >SEQ26880 Length=5820 Score = 98.7 bits (108), Expect = 3e-16 Identities = 127/174 (73%), Gaps = 5/174 (3%) Strand=Plus/Minus Query 14936 ATGAAGATGTGGGCGAACAACGCGGTCCCTGAGTCGCTGAAGTTCCCGCACGACGAAGTG 14995 |||||||||| || ||| ||||| |||||||| |||| ||||| ||||| | || Sbjct 1517 ATGAAGATGTACGCCAACCCGGCGGTGCCTGAGTCCATGAACTTCCCCCACGATGCGGTC 1458 Query 14996 GGCTCCGACCACGACTCGATCGGTCTGTTCCAGCAGCGGCA----GGCAGGGTGGGGGAC 15051 ||| |||| |||||| |||| || ||||||||||| | ||| | |||||| || Sbjct 1457 GGCGGCGACGCGGACTCGGTCGGCCTTTTCCAGCAGCGCGACAATGGC-GCGTGGGGCAC 1399 Query 15052 CGTCGCCGACCGGATGGATCCGCACCGCTCGGCGGCGATGTTCTTCGACGCCCT 15105 | ||| ||||| ||||| || | || || || | ||||||| ||||| ||| Sbjct 1398 CATCGAAGACCGCATGGACCCTGAGCGGTCCGCCGGAATGTTCTACGACGTCCT 1345 >SEQ27525 Length=13899 Score = 93.3 bits (102), Expect = 1e-14 Identities = 133/189 (70%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 2840 GCGATCGCCTACCACGACAACATGATNNNNNTCGCCGGTCTCGCCCACTTCCTCAACCTC 2899 |||||||||||||||||| ||||| || | || || |||||||| ||||| Sbjct 9806 GCGATCGCCTACCACGACTCGATGATGGCGAAGGCGGTGCTGGCGCACTTCCTGAACCTT 9747 Query 2900 GAGGGCAAGGGCGGCTCGTACGCGCTGGCCAGCGTCCAGGAGCACACGTTCTCCCAGTCG 2959 ||||||||||||||||| ||||| ||||| |||| | | |||| ||||||| Sbjct 9746 GAGGGCAAGGGCGGCTCCTACGCCCTGGCGGAGACCCAGTCGGATCTGTTCATCCAGTCG 9687 Query 2960 GTGCAGACCGTCGGCGAGCAGACCCGCGACATCGGCAACGCGCACGTGATCGAGGACCTC 3019 |||||||| ||| || || |||| || || | |||| | | || |||||| Sbjct 9686 CTGCAGACCATCGCGGACTGGATAGCGGACACCGCCACCCAGCACATCGTGGAAGACCTC 9627 Query 3020 GTCGACATC 3028 || |||||| Sbjct 9626 GTTGACATC 9618 Score = 82.4 bits (90), Expect = 2e-11 Identities = 163/233 (70%), Gaps = 10/233 (4%) Strand=Plus/Minus Query 5389 GGTGTCGTCGCGTTCCGCGAAGGCGATCCGACATTCCTCGACGACGACGTCCAGGATGTC 5448 || |||||||| |||||||| | || ||| | ||||| ||||| | | |||| || Sbjct 7132 GGCGTCGTCGCTTTCCGCGAGGCCGCGGCGAACTACCTCGGTGACGATGCCGAGGAGATC 7073 Query 5449 GCCGAGTTCGGCGAGATCCCGGTGAGCGCCGGTC--GA-CTCGGCCTGCCGCGTGCCGCG 5505 ||||||| |||||||||||| || | ||| || || |||||| | | |||||| Sbjct 7072 GCCGAGTACGGCGAGATCCCCGT---CTCCGCTCCGGAGCTCGGCGCACTGAAGGCCGCG 7016 Query 5506 TACGCGACGAAGAAGGCTCTCGGCGTTCGCATCTCGAAGGAGATGATCGACGAGAACAAG 5565 | || | |||| | | | | |||||||| |||| | | ||||||||||| Sbjct 7015 TTCGGCATCAAGACCGGTGAGGCAATCCGCATCTCCTGGGAGCAGCGCAACGAGAACAAG 6956 Query 5566 ATCGACGCGGTGAACAAGCAG-ATCACCGGTCT-GCGCAACACCTTCGTCCGC 5616 ||||||||||| || |||| ||| |||||| | || ||| |||||||| Sbjct 6955 ATCGACGCGGT-CACCCGCAGCATCGACGGTCTCGAGC-GCACTGTCGTCCGC 6905 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 157507317996480