Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20nasuta_20[genbank_20GCA_5F002222885.1_202017-07-20] 46,105 sequences; 137,224,182 total letters Query= NC_031249.1 Length=50127 Score E Sequences producing significant alignments: (Bits) Value SEQ29447 197 4e-46 SEQ26880 113 1e-20 SEQ27525 98.7 3e-16 >SEQ29447 Length=7397 Score = 197 bits (218), Expect = 4e-46 Identities = 255/349 (73%), Gaps = 5/349 (1%) Strand=Plus/Minus Query 15244 GCGACGGCGCTCGTCGAGGTGGGCGACCCGATGAAGATGTACGCCAACACCGCCGTCCCG 15303 |||||||| || || ||| ||| |||||||||||||||||||||| || || || ||| Sbjct 5641 GCGACGGCACTGGTGGAGTCGGGTGACCCGATGAAGATGTACGCCAGCAATGCGGTTCCG 5582 Query 15304 GAATCGCTGAAGTTCCCGCACGACGCCGTCGGCTCCGACCACGACTCGATCGGCCTGTTC 15363 || |||||||| | |||||||||||| |||| |||||| || || ||||| |||||| Sbjct 5581 GAGTCGCTGAACTACCCGCACGACGCGATCGGGAGCGACCATGATTCCATCGGTCTGTTC 5522 Query 15364 CAGCAGCGGCAGGCAGGGTGGGGGACCGTCGCCGACCGGATGGATCCGCACCGCTCGGCG 15423 |||||||| ||||| |||||||| |||||||| | || |||||||||||| | ||| Sbjct 5521 CAGCAGCGTCAGGCCGGGTGGGGCACCGTCGCACAGCGTATGGATCCGCACGACAGTGCG 5462 Query 15424 AAGATGTTCTACGACGC---GCTGATGAAGGTCCCCGGCTGGGAAACCATGGACATGGGT 15480 |||||| | || ||| |||| |||| |||| |||| | | |||||| || Sbjct 5461 TCGATGTTTTTCGCCGCGATGCTGCGGAAGTTCCCGAACTGGCAGTCGATGGACCCCGGC 5402 Query 15481 GCCGCGGCACAGGCGGTGCAGCGCAGCGCATTCCCCGGGAAGTACGCCGGCCGGATGGCG 15540 |||| ||| |||| |||||| | ||||| || | |||| | | ||||| Sbjct 5401 GCCGTGGCGCAGGGTGTGCAGGTCTCGGCATTTCCGGACCGGTACAACACCAAGATGGGT 5342 Query 15541 CGTGCGACGGAGCTCGTCGACAAGTTC-GGCATCTACGACCAGGGCGGC 15588 | || |||||||| | || | | ||| | ||||||||||||||| Sbjct 5341 AGGGCTGAAGAGCTCGTTG-CATCTGCGGGCCTGTACGACCAGGGCGGC 5294 >SEQ26880 Length=5820 Score = 113 bits (124), Expect = 1e-20 Identities = 128/170 (75%), Gaps = 5/170 (3%) Strand=Plus/Minus Query 15274 ATGAAGATGTACGCCAACACCGCCGTCCCGGAATCGCTGAAGTTCCCGCACGACGCCGTC 15333 |||||||||||||||||| | || || || || || |||| ||||| ||||| || ||| Sbjct 1517 ATGAAGATGTACGCCAACCCGGCGGTGCCTGAGTCCATGAACTTCCCCCACGATGCGGTC 1458 Query 15334 GGCTCCGACCACGACTCGATCGGCCTGTTCCAGCAGCGGCA----GGCAGGGTGGGGGAC 15389 ||| |||| |||||| ||||||| ||||||||||| | ||| | |||||| || Sbjct 1457 GGCGGCGACGCGGACTCGGTCGGCCTTTTCCAGCAGCGCGACAATGGC-GCGTGGGGCAC 1399 Query 15390 CGTCGCCGACCGGATGGATCCGCACCGCTCGGCGAAGATGTTCTACGACG 15439 | ||| ||||| ||||| || | || || || ||||||||||||| Sbjct 1398 CATCGAAGACCGCATGGACCCTGAGCGGTCCGCCGGAATGTTCTACGACG 1349 >SEQ27525 Length=13899 Score = 98.7 bits (108), Expect = 3e-16 Identities = 135/189 (71%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 2840 GCGATCGCATACCACGACAACATGATCGCGATCGCCGGTCTCGCCCACTTCCTCAACCTC 2899 |||||||| ||||||||| ||||| |||| || | || || |||||||| ||||| Sbjct 9806 GCGATCGCCTACCACGACTCGATGATGGCGAAGGCGGTGCTGGCGCACTTCCTGAACCTT 9747 Query 2900 GAAGGCAAGGGCGGCTCGTACGCGCTGGCCAGCGTCCAGGAGCACACGTTCTCCCAGTCG 2959 || |||||||||||||| ||||| ||||| |||| | | |||| ||||||| Sbjct 9746 GAGGGCAAGGGCGGCTCCTACGCCCTGGCGGAGACCCAGTCGGATCTGTTCATCCAGTCG 9687 Query 2960 GTGCAGACCGTCGGCGAGCAGACCCGCGACATCGGCAACGCGCACGTGATCGAGGACCTC 3019 |||||||| ||| || || |||| || || | |||| | | || |||||| Sbjct 9686 CTGCAGACCATCGCGGACTGGATAGCGGACACCGCCACCCAGCACATCGTGGAAGACCTC 9627 Query 3020 GTCGACATC 3028 || |||||| Sbjct 9626 GTTGACATC 9618 Score = 80.6 bits (88), Expect = 9e-11 Identities = 161/231 (70%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 5365 GGTGTCGTCGCGTTCCGCGAAGGCGATCCGACGTTCCTCGACGACGACGTGCAGGATGTC 5424 || |||||||| |||||||| | || ||| | ||||| ||||| | |||| || Sbjct 7132 GGCGTCGTCGCTTTCCGCGAGGCCGCGGCGAACTACCTCGGTGACGATGCCGAGGAGATC 7073 Query 5425 GCCGAGTTCGGCGAGATCCCGGTCAGCGC-CGGTCGACTCGGCCTGCCGCGCGCCGCGTA 5483 ||||||| |||||||||||| ||| ||| | | | |||||| | | ||||||| Sbjct 7072 GCCGAGTACGGCGAGATCCCCGTCTCCGCTCCGGAG-CTCGGCGCACTGAAGGCCGCGTT 7014 Query 5484 CGCGACGAAGAAGGCTCTCGGCGTTCGCATCTCGAAGGAGATGATCGACGAGAACAAGAT 5543 || | |||| | | | | |||||||| |||| | | ||||||||||||| Sbjct 7013 CGGCATCAAGACCGGTGAGGCAATCCGCATCTCCTGGGAGCAGCGCAACGAGAACAAGAT 6954 Query 5544 CGACGCGGTGAACAAGCAG-ATCACCGGTCT-GCGCAACACCTTCGTCCGC 5592 ||||||||| || |||| ||| |||||| | || ||| |||||||| Sbjct 6953 CGACGCGGT-CACCCGCAGCATCGACGGTCTCGAGC-GCACTGTCGTCCGC 6905 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 160197044572890