Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20nasuta_20[genbank_20GCA_5F002222885.1_202017-07-20]
46,105 sequences; 137,224,182 total letters
Query= NC_031251.1
Length=47880
Score E
Sequences producing significant alignments: (Bits) Value
SEQ27525 118 3e-22
>SEQ27525
Length=13899
Score = 118 bits (130), Expect = 3e-22
Identities = 270/402 (67%), Gaps = 11/402 (3%)
Strand=Plus/Minus
Query 2203 CGCAGGCGCGGCCGGTTCTCGTGGGAAGAGCACCTGCAGCTTGCGCTCCTGTCAATCCAG 2262
||| | || ||| || | |||||| ||||| ||||| | || || ||||| | |||
Sbjct 10373 CGCCGCCGGGGCAGGGTGTCGTGGTCGGAGCATCTGCACCAGGCTCTGCTGTCGCTGCAG 10314
Query 2263 TACGGGCACATGTTCTTCGAGCAGGTGTACAGCCTCGGCGACGACGGCCTGTACCACCTG 2322
| ||| ||||||||||||||||||||||||| ||||| || || | | | || |||
Sbjct 10313 TTCGGCTGCATGTTCTTCGAGCAGGTGTACAGCGTCGGCCCGGATGGTCGGAATCATCTG 10254
Query 2323 CGCAAGCTCGGCCCCCGTATGCCGCGCACCATCTCCGACATCAAGGTCGCCCGCGACGGC 2382
|| ||||| | || || | ||| |||| | | |||||| ||||| || ||
Sbjct 10253 CGGAAGCTGGCGCCGCGGTTCCCGGGCACGCTGACGCGCATCAATGTCGCTGCGGATGGT 10194
Query 2383 GGACTCGTCGCGATCGAGCAGTACGGCTTCACCGT--CGACGCCGA---CCTCGTCAGC- 2436
|| |||| | ||||||||| | ||| | | || || | ||| || | | ||
Sbjct 10193 GGGCTCGCGTCCATCGAGCAGCAGGGCGTGTCGGTGGGGAAGGCGAAGGCCGAGGCGGCG 10134
Query 2437 ---ATCCCTGTCGACCGCCTCGTCGCCTACGTCAACGAGCGCGAAGGCGGCGACTGGGTC 2493
|||||||||| || ||| || ||||| ||| | | | ||| | || | || |
Sbjct 10133 ACGATCCCTGTCGGCCACCTGGTGGCCTATGTCCATGCTC-CGACTGACACGTCGTGGAC 10075
Query 2494 GGCAACTCAC-TGCTGCGGCCCGCCTACAAGCACTGGCTGATCAAGGACCGGCTGCTGCG 2552
|| ||| | |||| || || || |||||||||||| | | ||| | | |||||||
Sbjct 10074 GGGAACGAGCGTGCTCCGCCCGGCGTACAAGCACTGGAAGCTTCGGGATCAGATGCTGCG 10015
Query 2553 CGTGCAGGCACAGACCATCGAACGCAACGGTATGGGCGTCCC 2594
| |||| ||| | || |||||||| |||||||| ||
Sbjct 10014 GCTTGAGGCGCAGGTTCTTGAGCGCAACGGGATGGGCGTGCC 9973
Score = 116 bits (128), Expect = 1e-21
Identities = 245/360 (68%), Gaps = 13/360 (4%)
Strand=Plus/Minus
Query 806 CGGGGCGAAGGTGGTGTTCACGACCCGGTCGGCGAACGCCGGCCGTGGTCTGGACAAGGT 865
||||| |||||| |||||||||||||||| |||| |||||||| | ||| || |
Sbjct 11737 CGGGGGGAAGGTCCAGTTCACGACCCGGTCGAACGACGCGGGCCGTGGCTTCGACCAGAT 11678
Query 866 CGATCTGGTCATCTACGACGAGGCATACGACCTGACCGAGGC---CGATATGG-CGGCGC 921
|||||| | || ||| ||||| ||| ||||| ||||| ||| ||| | ||
Sbjct 11677 AGATCTGCTGCTCCTCGATGAGGCGTACAACCTG---GAGGCCGGCGAGCTGGACAGC-A 11622
Query 922 TGTCGCCGACGAAGATGGCCGCCGATGACCCGCAGACGATCTACACGTCGTCGGCGGTGA 981
| |||||| || |||| || || ||||||||| ||||||||| ||||||||||
Sbjct 11621 TCACGCCGATCCAGTTGGCGGCACCGGATCCGCAGACGTACTACACGTCCTCGGCGGTGA 11562
Query 982 ATCAAGAGCAGCACCCGAACGGCCAGGTCCTCGCGGCGGTCCGGGAACG----CGTGCTG 1037
|||| | ||| ||||| ||| || || | |||||| || || | || |
Sbjct 11561 ATCAGTCTCGGCATCCGAAGGGCGTGGAGCTGTCTCGGGTCCGTGACCGTGCTCTGGCCG 11502
Query 1038 CTGAGCGAAGAGGGTCTGTTCGGCGCCGAGTGGATGGCGCCGGAGGAGCTCGACCGGGCG 1097
|||| | ||||| || || | |||||| ||||||||| | | |||| ||
Sbjct 11501 GTGAG-GCTGAGGGCATGCTCTACTCCGAGTTCCGGGCGCCGGATGGGGCGGACCCTGCT 11443
Query 1098 GAACCCTCGACGTGGCGGTGGGCGAACCCGTCGTTCGGGGTGATCCAGACCGTGAAGAAG 1157
|| || ||| ||| || |||||||||||| | ||| || | ||| | |||||||
Sbjct 11442 GACCCGGAGACATGGAAGTTGGCGAACCCGTCATACGGTGTCGTGGCGACGGAGAAGAAG 11383
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 153010581294420
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |