Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20nasuta_20[genbank_20GCA_5F002222885.1_202017-07-20] 46,105 sequences; 137,224,182 total letters Query= NC_031251.1 Length=47880 Score E Sequences producing significant alignments: (Bits) Value SEQ27525 118 3e-22 >SEQ27525 Length=13899 Score = 118 bits (130), Expect = 3e-22 Identities = 270/402 (67%), Gaps = 11/402 (3%) Strand=Plus/Minus Query 2203 CGCAGGCGCGGCCGGTTCTCGTGGGAAGAGCACCTGCAGCTTGCGCTCCTGTCAATCCAG 2262 ||| | || ||| || | |||||| ||||| ||||| | || || ||||| | ||| Sbjct 10373 CGCCGCCGGGGCAGGGTGTCGTGGTCGGAGCATCTGCACCAGGCTCTGCTGTCGCTGCAG 10314 Query 2263 TACGGGCACATGTTCTTCGAGCAGGTGTACAGCCTCGGCGACGACGGCCTGTACCACCTG 2322 | ||| ||||||||||||||||||||||||| ||||| || || | | | || ||| Sbjct 10313 TTCGGCTGCATGTTCTTCGAGCAGGTGTACAGCGTCGGCCCGGATGGTCGGAATCATCTG 10254 Query 2323 CGCAAGCTCGGCCCCCGTATGCCGCGCACCATCTCCGACATCAAGGTCGCCCGCGACGGC 2382 || ||||| | || || | ||| |||| | | |||||| ||||| || || Sbjct 10253 CGGAAGCTGGCGCCGCGGTTCCCGGGCACGCTGACGCGCATCAATGTCGCTGCGGATGGT 10194 Query 2383 GGACTCGTCGCGATCGAGCAGTACGGCTTCACCGT--CGACGCCGA---CCTCGTCAGC- 2436 || |||| | ||||||||| | ||| | | || || | ||| || | | || Sbjct 10193 GGGCTCGCGTCCATCGAGCAGCAGGGCGTGTCGGTGGGGAAGGCGAAGGCCGAGGCGGCG 10134 Query 2437 ---ATCCCTGTCGACCGCCTCGTCGCCTACGTCAACGAGCGCGAAGGCGGCGACTGGGTC 2493 |||||||||| || ||| || ||||| ||| | | | ||| | || | || | Sbjct 10133 ACGATCCCTGTCGGCCACCTGGTGGCCTATGTCCATGCTC-CGACTGACACGTCGTGGAC 10075 Query 2494 GGCAACTCAC-TGCTGCGGCCCGCCTACAAGCACTGGCTGATCAAGGACCGGCTGCTGCG 2552 || ||| | |||| || || || |||||||||||| | | ||| | | ||||||| Sbjct 10074 GGGAACGAGCGTGCTCCGCCCGGCGTACAAGCACTGGAAGCTTCGGGATCAGATGCTGCG 10015 Query 2553 CGTGCAGGCACAGACCATCGAACGCAACGGTATGGGCGTCCC 2594 | |||| ||| | || |||||||| |||||||| || Sbjct 10014 GCTTGAGGCGCAGGTTCTTGAGCGCAACGGGATGGGCGTGCC 9973 Score = 116 bits (128), Expect = 1e-21 Identities = 245/360 (68%), Gaps = 13/360 (4%) Strand=Plus/Minus Query 806 CGGGGCGAAGGTGGTGTTCACGACCCGGTCGGCGAACGCCGGCCGTGGTCTGGACAAGGT 865 ||||| |||||| |||||||||||||||| |||| |||||||| | ||| || | Sbjct 11737 CGGGGGGAAGGTCCAGTTCACGACCCGGTCGAACGACGCGGGCCGTGGCTTCGACCAGAT 11678 Query 866 CGATCTGGTCATCTACGACGAGGCATACGACCTGACCGAGGC---CGATATGG-CGGCGC 921 |||||| | || ||| ||||| ||| ||||| ||||| ||| ||| | || Sbjct 11677 AGATCTGCTGCTCCTCGATGAGGCGTACAACCTG---GAGGCCGGCGAGCTGGACAGC-A 11622 Query 922 TGTCGCCGACGAAGATGGCCGCCGATGACCCGCAGACGATCTACACGTCGTCGGCGGTGA 981 | |||||| || |||| || || ||||||||| ||||||||| |||||||||| Sbjct 11621 TCACGCCGATCCAGTTGGCGGCACCGGATCCGCAGACGTACTACACGTCCTCGGCGGTGA 11562 Query 982 ATCAAGAGCAGCACCCGAACGGCCAGGTCCTCGCGGCGGTCCGGGAACG----CGTGCTG 1037 |||| | ||| ||||| ||| || || | |||||| || || | || | Sbjct 11561 ATCAGTCTCGGCATCCGAAGGGCGTGGAGCTGTCTCGGGTCCGTGACCGTGCTCTGGCCG 11502 Query 1038 CTGAGCGAAGAGGGTCTGTTCGGCGCCGAGTGGATGGCGCCGGAGGAGCTCGACCGGGCG 1097 |||| | ||||| || || | |||||| ||||||||| | | |||| || Sbjct 11501 GTGAG-GCTGAGGGCATGCTCTACTCCGAGTTCCGGGCGCCGGATGGGGCGGACCCTGCT 11443 Query 1098 GAACCCTCGACGTGGCGGTGGGCGAACCCGTCGTTCGGGGTGATCCAGACCGTGAAGAAG 1157 || || ||| ||| || |||||||||||| | ||| || | ||| | ||||||| Sbjct 11442 GACCCGGAGACATGGAAGTTGGCGAACCCGTCATACGGTGTCGTGGCGACGGAGAAGAAG 11383 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 153010581294420