Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20nasuta_20[genbank_20GCA_5F002222885.1_202017-07-20] 46,105 sequences; 137,224,182 total letters Query= NC_031267.1 Length=42979 Score E Sequences producing significant alignments: (Bits) Value seq6253 336 6e-88 SEQ30131 168 2e-37 SEQ26880 86.0 2e-12 >seq6253 Length=4700 Score = 336 bits (372), Expect = 6e-88 Identities = 424/577 (73%), Gaps = 8/577 (1%) Strand=Plus/Minus Query 37803 CCTCACCCTCGCAGACTTCTTCTGCGGAGCCGGTGGAAGCTCAACCGGCGCAATGCAAGT 37862 |||||||||| | |||||||||||||| ||||| ||| ||| ||||| ||| | | || Sbjct 4474 CCTCACCCTCTCCGACTTCTTCTGCGGTGCCGGCGGATCCTCCACCGGAGCACTCGACGT 4415 Query 37863 ACCCGGGATCACCGTCGCCGTCGCAGCAAACCACTGGGACCTCGCCATCGACACCCACTC 37922 ||||| || |||| || ||| || | ||||||||| |||||| |||| |||||| Sbjct 4414 CCCCGGCGTCGACGTCCGCGCCGCCGCCACCCACTGGGATCTCGCCGTCGAAACCCACCA 4355 Query 37923 -CGCCAACCATCCCGACACTGAACACATCTGCGCCGACATCAGCCAATACGAACCAAGAC 37981 ||||| ||| || ||| | |||||||||||||||||||||||||| ||||| || || Sbjct 4354 GCGCCA-CCACCCGGACGCCGAACACATCTGCGCCGACATCAGCCAGTACGAGCCGAGCT 4296 Query 37982 TGTTCCCCAGAACCAACATCGCCTGGCTATCCCCATCCTGCACGAAACACTCCATCGCCC 38041 |||||||| || || |||||||| | ||||| |||||||| | ||| | | || | Sbjct 4295 TGTTCCCCCACACGGACCTCGCCTGGTTCTCCCCCTCCTGCACCAGCCACACGGTGGCGC 4236 Query 38042 AGGGCAAACGGCAAGCCGA-CAAGCAAC--CCGACCTGTTCGGCGAAA---CCCTCCCAG 38095 |||||| | ||||| | || | || || | |||| |||| ||||||| | Sbjct 4235 AGGGCATGGCCCGTGCCGACCGGGCCGCCGCCTACGTCCTCGGAGAAACCCCCCTCCCCG 4176 Query 38096 ATGCCGCGGCCGAACGATCCCGCGCCACCATGTGGGACGTCGTCCGCTTCGCCGAGTATC 38155 | | |||| |||||||||||||||||||||||||||||| || |||||| ||||||| | Sbjct 4175 ACGACGCGCACGAACGATCCCGCGCCACCATGTGGGACGTGGTGCGCTTCACCGAGTACC 4116 Query 38156 ACGCCTATGAAGCTGTCATCGTCGAGAACGTCGTCGAGGTCACCGCCTGGCCGCCCTACC 38215 || ||| | || ||||| |||||||||||| |||||||||| ||| |||| | || Sbjct 4115 ACCACTACGCCGCGGTCATTGTCGAGAACGTCACCGAGGTCACCAAGTGGGCGCCATTCC 4056 Query 38216 AAGCGTGGCTGGCCGCCATGGACTCGTTGGGCTATCAGCACCAGGTGCTCATGCTCAACT 38275 |||||| | || ||||| || | ||||| |||||| | ||||||||||| Sbjct 4055 CCGCGTGGATCATGGCGATGGAAGCGCTCGGCTACAAGCACCGCATTGTCATGCTCAACA 3996 Query 38276 CGATGCACGCCCACGCATACGGTACGGGTGCACCGCAGTCACGGGACCGCTTCTACGCCG 38335 ||||||||| | ||||| | | || |||| || || ||||| |||||| || Sbjct 3995 GCATGCACGCCGGCCTGTACGGCCCCGCCGCCGCGCAATCCCGCGACCGGTTCTACTGCG 3936 Query 38336 TGTTCTGGCGCCGCGGCAACCCGAAACCCGACCTCGA 38372 ||||||||| | || || | | | || || ||||| Sbjct 3935 TGTTCTGGCAGCCCGACATCACCGACCCGGATCTCGA 3899 >SEQ30131 Length=2206 Score = 168 bits (186), Expect = 2e-37 Identities = 282/407 (69%), Gaps = 8/407 (2%) Strand=Plus/Plus Query 39678 GGAAGGAGGCTCCA--TGAGAATCCGATCGACCAAGCCAGAGTTCTGGCGCTCCCACCGC 39735 ||||||||| || |||| ||| ||||||| ||||| ||||||||| | || | Sbjct 1672 GGAAGGAGGGGACAGGTGAGGATCAGATCGACGAAGCCGGAGTTCTGGAGTTCGAAGACG 1731 Query 39736 ATCGCGTCAGTGTCG--TGGGACGCCCGATTGGTCCTGAAGGGCCTCGAATCGTTCGTCG 39793 || ||| | ||||| ||||| || || ||||||| ||||| || || | |||| Sbjct 1732 ATAGCGGC--TGTCGACTGGGATGCGCGTCTGGTCCTCAAGGGACTTGAGAGCTATGTCG 1789 Query 39794 ATGACAACGGTGTCGGCAAGGACGACATCGAGCTAATCATCGGGGATCTGTTCCAGCGCG 39853 ||||||| ||||| ||| ||| ||||| | || ||| || ||| ||||| |||| Sbjct 1790 ATGACAATGGTGTGGGCCGGGATGACATTGCTCTGATCGTCTCGGAAGTGTTCGTTCGCG 1849 Query 39854 ACCTCATTCGCGAGCCCTNNNNNNNNNNNNNN-AGGGTGTCCGAAGCAATTTCCGAACTC 39912 ||| |||||||| ||| |||||||||||||| |||||| | || Sbjct 1850 ACCAT-TTCGCGAGGCCTCGCGAGACTGTCGCGAGGGTGTCCGAAGCCATTTCCCAGCTG 1908 Query 39913 CACCAGGCCGGTCTGGTGTGGCGGTACGACCACGAAGGCACCTCGCTGCTCTATGTGGCG 39972 | |||||||| | ||| | ||||| ||| || | || | || | || Sbjct 1909 ACTGAAGCCGGTCTCCTATGGAGATACGAGGCCGATGGTAATGAATTGATATACATTTCG 1968 Query 39973 TTCTGGGAGAGCATCCAGAGAGTCGACAAACCGCAGCCGGGACGTTTGCCCAGGCCAGAC 40032 |||||| ||| |||| || ||||||| || | |||||||| |||||||||||| Sbjct 1969 AACTGGGACAGCCTCCAACGAATCGACAAGCCAAACAAAGGACGTTTCCCCAGGCCAGAC 2028 Query 40033 GGCACATTGAACTACAAGGACTCCCAGATTCGCGAGTGCGTCGCGAG 40079 |||||| ||||||||||||| || |||||||||| | |||||||| Sbjct 2029 GGCACAATGAACTACAAGGAATCAACGATTCGCGAGAGTGTCGCGAG 2075 >SEQ26880 Length=5820 Score = 86.0 bits (94), Expect = 2e-12 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 12559 GGCTGGTACAACGGCGGTGAGGGCGGCGGTCACACTGCCGGCACCCTGCCAGACGGCACC 12618 |||||| ||||| ||| ||| ||||| |||||| ||||||||||||| ||||||||| Sbjct 2396 GGCTGGATGAACGGGGGTCCGGGAGGCGGCCACACTTCCGGCACCCTGCCGGACGGCACC 2337 Query 12619 AACATCGAGATGGGCGG 12635 ||| | ||||||||||| Sbjct 2336 AACGTGGAGATGGGCGG 2320 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 137335967797410