Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20nasuta_20[genbank_20GCA_5F002222885.1_202017-07-20] 46,105 sequences; 137,224,182 total letters Query= NC_031269.1 Length=51884 Score E Sequences producing significant alignments: (Bits) Value SEQ27525 145 3e-30 >SEQ27525 Length=13899 Score = 145 bits (160), Expect = 3e-30 Identities = 381/573 (66%), Gaps = 29/573 (5%) Strand=Plus/Minus Query 582 CTGATCGTTCCGCGGCAGAACGGCAAGTCGCTGATCCT---GGTGATCCGCGTGCTGTAC 638 |||||| |||||||||||||||||||| |||||||| ||||||| | || ||| Sbjct 11961 CTGATCTGCCCGCGGCAGAACGGCAAGTCTCTGATCCTCGAGGTGATCATC---CTCTAC 11905 Query 639 GGGCTGTTCAAGCTCGGCGAGAACATCGTCTTCTCGGCACACCAGTGGGAGACCGCGAAG 698 | || |||| || || | ||| ||||| |||| || |||||| ||| |||||| Sbjct 11904 CGCCTATTCATCCTGCATCAGCAGATCATCTTCACGGCGCAGCAGTGGCGGACGGCGAAG 11845 Query 699 TCGCTGTGGAAGCGGGCCTGGGCGATCGTGAAGACGACGCCGTGGCTGAACAAGC-TCGT 757 ||| | |||| || ||| | | | ||| || | |||| | | || ||| Sbjct 11844 TCGATCCGGAACCGACTGTGGAAGCGCATCAAGTCGCGGAAGTGGGCGGA---GCGTCGA 11788 Query 758 CGAGTCACACACCTGCAGCCAGGGCCGCGGCACGATCGAGCTGACGACC------GGGGC 811 | ||| | | | | || ||||| | | | | ||| || |||| |||| Sbjct 11787 CTGGTCCGAAA--TACGGCGTCGGCCGGTG-AGGCT-GAGATGGAGACCAGTGACGGGGG 11732 Query 812 GAAGGTCGTGTTCACGACCCGGTCGGCGAACGCCGGCCGCGGTCTGGACAAGGTCGATCT 871 ||||||| |||||||||||||||| |||| ||||| || | ||| || | ||||| Sbjct 11731 GAAGGTCCAGTTCACGACCCGGTCGAACGACGCGGGCCGTGGCTTCGACCAGATAGATCT 11672 Query 872 GGTCATCTACGACGAGGCGTACGACCTGACCGAGGC---CGACATGGCGGCCCTGTCGCC 928 | | || ||| ||||||||| ||||| ||||| ||| ||| | | |||| Sbjct 11671 GCTGCTCCTCGATGAGGCGTACAACCTG---GAGGCCGGCGAGCTGGACAGCATCACGCC 11615 Query 929 GACGAAGATGGCCGCCGACGACCCGCAAACGATCTACACGTCGTCGGCGGTGAACCAGGA 988 || || |||| || || ||||| ||| ||||||||| ||||||||||| ||| Sbjct 11614 GATCCAGTTGGCGGCACCGGATCCGCAGACGTACTACACGTCCTCGGCGGTGAATCAGTC 11555 Query 989 ACAGCACCCGAACGGGCAGGTCCTCGCCGCGGTCCGGGAACGTCTGCTGGCCGGCGAG-- 1046 | ||| ||||| || || || | |||||| || ||| |||||||| ||| Sbjct 11554 TCGGCATCCGAAGGGCGTGGAGCTGTCTCGGGTCCGTGACCGTGCTCTGGCCGGTGAGGC 11495 Query 1047 -GAAGGCCTGTTCGGCGCCGAGTGGATGGCGCCGGAGGAGCTCGACCGGTCGGAGCCGTC 1105 || ||| || || | |||||| ||||||||| | | |||| | || ||| Sbjct 11494 TGAGGGCATGCTCTACTCCGAGTTCCGGGCGCCGGATGGGGCGGACCCTGCTGACCCGGA 11435 Query 1106 GACGTGGCGGTGGGCGAACCCGTCGTTCGGGGT 1138 ||| ||| || |||||||||||| | ||| || Sbjct 11434 GACATGGAAGTTGGCGAACCCGTCATACGGTGT 11402 Score = 105 bits (116), Expect = 2e-18 Identities = 140/193 (73%), Gaps = 6/193 (3%) Strand=Plus/Minus Query 2805 GGCGATCGCCTACCACGACAACATGATCGCGATCGCCGGTCTCGCGCACTTCCTCAACCT 2864 ||||||||||||||||||| ||||| |||| || | || ||||||||||| ||||| Sbjct 9807 GGCGATCGCCTACCACGACTCGATGATGGCGAAGGCGGTGCTGGCGCACTTCCTGAACCT 9748 Query 2865 CGAGGGCGGCGGCGGATCGTATGCGCTCGC---GAGCGTGCAGGAACACACCTTCACCCA 2921 |||||| ||||| || || || || || || | | ||| | |||| ||| Sbjct 9747 TGAGGGCAAGGGCGGCTCCTACGCCCTGGCGGAGACCCAGTCGGATC---TGTTCATCCA 9691 Query 2922 ATCGGTGCAGACGACCGCCGAGTGGGTCCGCGACACCGCGACCGCCCACATCGTCGAGGA 2981 ||| ||||||| | ||| || ||| | |||||||| ||| |||||||| || || Sbjct 9690 GTCGCTGCAGACCATCGCGGACTGGATAGCGGACACCGCCACCCAGCACATCGTGGAAGA 9631 Query 2982 CCTCGTCGACATC 2994 |||||| |||||| Sbjct 9630 CCTCGTTGACATC 9618 Score = 98.7 bits (108), Expect = 3e-16 Identities = 255/383 (67%), Gaps = 12/383 (3%) Strand=Plus/Minus Query 3459 GTGCGCATCAACTCGCCCGGCGGCGACGTGTACGACGCGCTGGCCATCACCAACGCGCTG 3518 || ||||||||| ||||| ||||| || ||| | | |||||| |||| ||||||||| Sbjct 9142 GTCCGCATCAACAGCCCCGGTGGCGATGTCTACCAGGGGCTGGCGATCATGAACGCGCTG 9083 Query 3519 CGCAATCACGACGCGACGGTGACGGTGCAGGTCGACAGCCTCGCCGCCAGCGCAGCCAGC 3578 || ||||||| |||||||| | | ||| || || | ||||| ||||| | Sbjct 9082 CGATCCCACGACGGCACGGTGACCGCGGTGGTGGAGGGCATGGCCGCATCGGCAGCATCC 9023 Query 3579 TTCATCGCGATGGCCGGCG---ACGAGGTCGTGATGTGCCGCAACTCCGAGCTGATGATC 3635 |||||||| | | ||||| | || |||||| ||| || | | ||||| |||||| Sbjct 9022 TTCATCGCTGTCGGCGGCGCGTCCCGTGTGGTGATGCGCCCCACCGCGGAGCTAATGATC 8963 Query 3636 CACGACGCCCGCGGCTTCTGCATCGGCAGCGCCACCGACATGGCTGAGTACG-CCGAATG 3694 ||||| || ||| | ||| | |||| || || || || || ||| Sbjct 8962 CACGAAGCGATGTCTTTCGTCGGCGGGAACGCCGGGGAGAT-GCAGAAGGCGATCGAGGA 8904 Query 3695 GCTCGGCCGCGCGAGC---GACAACATCGCGTCGATCTACGCCGAGAAGACCGGCGGCGA 3751 || | ||| || | | ||| | || ||||| || ||| | |||||||| Sbjct 8903 TCTGGACCG---GATCTCTGCGAACCTGGCCGGCATCTATGCGGAGCGCGCTGGCGGCGA 8847 Query 3752 CGCCAAGGACTGGCGCAAGGCGATGAAGGCCGAAACCTGGTACACGGCGGACGAAGCCGT 3811 | || | ||||| | ||||||||||| || || ||||| ||||| | || ||||| Sbjct 8846 GCCGGAGCAGTGGCGTGACGCGATGAAGGCGGAGACGTGGTATTCGGCGCAGGAGGCCGT 8787 Query 3812 CGAAGCCGGGCTCGCCGATCGCG 3834 || || |||||||| || |||| Sbjct 8786 GGATGCGGGGCTCGCTGA-CGCG 8765 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 165816366326460