Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20nasuta_20[genbank_20GCA_5F002222885.1_202017-07-20] 46,105 sequences; 137,224,182 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value SEQ10860 159 8e-34 seq4710 136 1e-26 seq4983 118 3e-21 >SEQ10860 Length=7223 Score = 159 bits (176), Expect = 8e-34 Identities = 159/205 (78%), Gaps = 1/205 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| ||||| ||||| || || || ||||| || ||||| ||| || || Sbjct 1677 CAAATCTTCGTTAAAACCCTCACGGGTAAGACCATCACTCTTGAGGTCGAACCGTCGGAT 1618 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || || |||||| ||||||||||||||||||||||| ||||| || || || Sbjct 1617 ACCATTGAAAATGTCAAAGCCAAGATTCAGGACAAAGAAGGAATTCCTCCAGATCAACAG 1558 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | ||||| ||||| || || | |||||||| | |||||| ||||||| || || Sbjct 1557 CGTTTGATCTTTGCCGGCAAGCAATTGGAAGATGGGCGCACTCTTTCCGATTACAATATC 1498 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 |||||||| || ||| |||| |||| Sbjct 1497 CAAAAAGAGTCTACATTGCA-CTTG 1474 >seq4710 Length=78879 Score = 136 bits (150), Expect = 1e-26 Identities = 156/209 (75%), Gaps = 3/209 (1%) Strand=Plus/Minus Query 177912 GTTAAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTG 177971 || ||||||| |||| |||||||| || || || ||||| || |||||||| |||||| Sbjct 8836 GTCAAAATGC---AAATCTTCGTGAAGACCCTGACTGGAAAGACCATCACCCTGGAGGTG 8780 Query 177972 GAAAGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCT 178031 || || || ||||| ||||| || || ||||| || ||||| ||||||||||| Sbjct 8779 GAGCCATCTGATACCATTGAGAATGTGAAGGCTAAGATCCAAGACAAGGAAGGAATCCCC 8720 Query 178032 CCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCC 178091 || || ||||| || || |||||||| || || ||||| || ||||| | ||||| | Sbjct 8719 CCAGATCAGCAGCGTCTCATCTTCGCTGGCAAGCAGCTGGAGGATGGTCGCACTCTGTCA 8660 Query 178092 GATTATAACGTCCAAAAAGAATCAACACT 178120 || || ||| |||| || || || || || Sbjct 8659 GACTACAACATCCAGAAGGAGTCGACCCT 8631 >seq4983 Length=3163 Score = 118 bits (130), Expect = 3e-21 Identities = 150/205 (73%), Gaps = 1/205 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || || || | || || || || || ||| | ||||| || ||| || Sbjct 867 CAGATCTTTGTAAAGACATTGACTGGCAAGACCATTACCTTGGAGGTTGAGCCCTCTGAT 808 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||||||||||||||| ||||| |||||||| || || || || || || ||||| Sbjct 807 ACCATCGAGAACGTCAAGGCCAAGATCCAGGACAAGGAGGGTATTCCCCCAGATCAGCAG 748 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | |||||||||||||| ||| | |||||||| | || || |||| || ||| || Sbjct 747 CGTTTGATCTTCGCCGGAAAGCAGTTGGAAGATGGTCGTACCCTCTCCGACTACAACATC 688 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || || || ||||| || || |||| Sbjct 687 CAGAAGGAGTCAACCCTTCA-CTTG 664 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203020131529370