Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20navojoa_20[refseq_20GCF_5F001654015.1_202016-05-09]
8,053 sequences; 115,885,644 total letters
Query= NC_001132.2
Length=161773
Score E
Sequences producing significant alignments: (Bits) Value
seq4 206 3e-48
>seq4
Length=22154029
Score = 206 bits (228), Expect = 3e-48
Identities = 546/817 (67%), Gaps = 14/817 (2%)
Strand=Plus/Plus
Query 16663 AACACCCATTCTTTGGTAATCGCTAACGCGTTTTTCGAAAAAGTTAGTTTTGCCCTCTAG 16722
||| ||||| | ||| || || | ||| || |||||||||||||||||||| || ||
Sbjct 3240314 AACGCCCATACGTTGATATTCTCCAACTTTCTTCTCGAAAAAGTTAGTTTTGCCATCCAG 3240373
Query 16723 AGATATATTCTCCATGAAATCAAAAGGATTAGTAGCTGAAAATATTTTAGAGTACCCC-A 16781
|| || |||||||||| || ||||| | | | ||||| | || || |
Sbjct 3240374 CGAGATCATCTCCATGAAGGTGAATGGATTCTTCGTATTGTAGATTTT-GCCAACACCGA 3240432
Query 16782 GTTCGGCGATTAATCTATCCGCTACAAATTCTATATATTGGCACATTAATTCGCAGTTCA 16841
|||| | | | | |||||| |||||||| ||||||||| |||| ||| | || ||||
Sbjct 3240433 GTTCCACCAGCAGACGATCCGCCACAAATTCAATATATTGGGACATCAATGCACAATTCA 3240492
Query 16842 TTCCTATAAGACGTACCGGAAGAGCTTCCGTCAAAAATCGTTGCTCTATAACAACCGCTT 16901
| || || | | || || ||||| || || | ||| |||||| || ||| || |
Sbjct 3240493 TGCCAATCAAATTGACGGGCAGAGCATCTGTGAGAAACTCTTGCTCAATGGTAACAGCAT 3240552
Query 16902 CCTTAATAATACTAGCAACT-CGTTCCTCGGACGGT--GTATGTTTAAGATGTTTAAACA 16958
|| ||||| || | | || ||| ||| || || || | ||| ||||
Sbjct 3240553 CCGAGATAAT-CTCGATGATACGCTCC-CGGCTGGGCCGT-TGCACCAAATGCCGGAACA 3240609
Query 16959 TCA-GACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAAT 17017
||| |||| || || || ||||| || |||||||| | ||| | || || || ||
Sbjct 3240610 TCATGACA-GCAAAGTCACAATGCAAGCCCTCGTCGCGTGAGATCAACTCATTGGAGAAC 3240668
Query 17018 GTCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAA 17077
|||| || |||||| || || ||||| | |||||| |||| ||| || ||
Sbjct 3240669 GTCAGACCTGGCATCAGACCACGCTTCTTCAGCCAAAAGATCGAGGCAAAGCTTCCGCTG 3240728
Query 17078 AAGAATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGC-GTCTTT 17136
||||| || ||||| |||| ||||||||||| | || ||| | | |||| | |||
Sbjct 3240729 AAGAAGATTCCCTCCACGGCAGCAAACGCGATAATTCTCTCGCCAAAGTTCGCCGCCTTC 3240788
Query 17137 GTTACGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTAT 17196
| | |||||| || |||| || || ||| |||| | ||| ||||| ||
Sbjct 3240789 GATGA-AATCCAAGAGAGCGCCCAATCAGCCTTTCGCTTGACAGCGGGCATTGTTTCAAT 3240847
Query 17197 GGCCTTAAATAATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGGCT 17256
||| || || | | || ||| |||| | || | ||||| |||||||| || | |||
Sbjct 3240848 GGCATTGAACAGATAATCCCTTTGCTGTGGATCCCTAATATATGTATCGATCAGCACGCT 3240907
Query 17257 GTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTC 17316
|||||| || ||||| | ||||||||||| || ||||| || || || || || |||||
Sbjct 3240908 GTACATCTCCGAGTGCACATTCTCCATGGCAATTTGAAAGCCATAGAAACAACGAGCTTC 3240967
Query 17317 CGCTATTTGAACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCT 17376
| |||||| || ||| | ||| || || | ||||| || || || ||||| |||
Sbjct 3240968 GGTTATTTGCACCTCCTGGCTGAAGCGCTCGACCAGATTCTCATTAACAATGCCATCGGA 3241027
Query 17377 CGCGGCGAAAAACGCCAATATATGCTTAATGAAATATTTTTCGTCCGGTGTAAGAACGCG 17436
||||| || || || | | |||| || || | |||| || | |||| |
Sbjct 3241028 GGCGGCAAAGAAGGCGAGCACATGCGAGATAAAGTGACGCTCGTTATCAGTTA-AACGTG 3241086
Query 17437 -CCAGTCCTTTAAATCTTTGGATATATCCACTTCTTC 17472
||||||| ||||| ||||| | |||||| || ||
Sbjct 3241087 CCCAGTCCGCCAAATCCTTGGAGAGATCCACCTCCTC 3241123
Score = 104 bits (114), Expect = 2e-17
Identities = 198/284 (70%), Gaps = 6/284 (2%)
Strand=Plus/Minus
Query 119783 TTCATATATCGTATCTTTCCGAACACGGTACGTTCCTTCCACGCTCTGTCGTGGAGCCCC 119842
|||||||| || ||||| ||||| | | ||||||||||| || |||||| | ||
Sbjct 611963 TTCATATAGCGAATCTTACCGAATATCGCGCGTTCCTTCCAGCCTTGGTCGTGAATGCCA 611904
Query 119843 GCTACGGCCCATAGGCATCCCACGTATCCGTTGGGATCCGTTCCATCTA-ACTCGTATTT 119901
| | || ||| | ||| || ||||| || || ||||| ||||| | ||| ||| ||
Sbjct 611903 CCGATGGACCACATGCAACCAACGTAGCCATTCGGATCGCGCCCATCCAGACT-GTACTT 611845
Query 119902 ATCGTTTAAGTAG-ATAC-AGACGCTTAACGCACTTTCAGGAGTCTCGCTCCATTCCAGT 119959
|||||| || ||| || | | || | || ||| || || || ||| ||||||| |
Sbjct 611844 ATCGTTCAA-TAGTATGCTATACTC-TAGCGCCTGCTCCGGCGTTTCGGTCCATTCTAAA 611787
Query 119960 AtttttttAGCCCAGTACATACGTAAGTATCCATGCATTTTACCTTCACGAACCATTTGA 120019
|| ||||| ||||| ||||| || ||| | || |||||||| || || |||| ||
Sbjct 611786 ATCTTTTTGGCCCAATACATGCGCAAGAAACCGTGCATTTTGCCCTCCTTCACCAGCTGT 611727
Query 120020 AGTTGTGCGGCGTTCCATAAGGGATCGTGTGTACGGGCGTGTTC 120063
|| || || | |||||| ||| |||| || || | ||| ||
Sbjct 611726 AGCTGGGCCGAGTTCCACAAGTCGTCGTAGGTGCGCGAGTGCTC 611683
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 517493502566040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |