Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20navojoa_20[refseq_20GCF_5F001654015.1_202016-05-09] 8,053 sequences; 115,885,644 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq4 206 3e-48 >seq4 Length=22154029 Score = 206 bits (228), Expect = 3e-48 Identities = 546/817 (67%), Gaps = 14/817 (2%) Strand=Plus/Plus Query 16663 AACACCCATTCTTTGGTAATCGCTAACGCGTTTTTCGAAAAAGTTAGTTTTGCCCTCTAG 16722 ||| ||||| | ||| || || | ||| || |||||||||||||||||||| || || Sbjct 3240314 AACGCCCATACGTTGATATTCTCCAACTTTCTTCTCGAAAAAGTTAGTTTTGCCATCCAG 3240373 Query 16723 AGATATATTCTCCATGAAATCAAAAGGATTAGTAGCTGAAAATATTTTAGAGTACCCC-A 16781 || || |||||||||| || ||||| | | | ||||| | || || | Sbjct 3240374 CGAGATCATCTCCATGAAGGTGAATGGATTCTTCGTATTGTAGATTTT-GCCAACACCGA 3240432 Query 16782 GTTCGGCGATTAATCTATCCGCTACAAATTCTATATATTGGCACATTAATTCGCAGTTCA 16841 |||| | | | | |||||| |||||||| ||||||||| |||| ||| | || |||| Sbjct 3240433 GTTCCACCAGCAGACGATCCGCCACAAATTCAATATATTGGGACATCAATGCACAATTCA 3240492 Query 16842 TTCCTATAAGACGTACCGGAAGAGCTTCCGTCAAAAATCGTTGCTCTATAACAACCGCTT 16901 | || || | | || || ||||| || || | ||| |||||| || ||| || | Sbjct 3240493 TGCCAATCAAATTGACGGGCAGAGCATCTGTGAGAAACTCTTGCTCAATGGTAACAGCAT 3240552 Query 16902 CCTTAATAATACTAGCAACT-CGTTCCTCGGACGGT--GTATGTTTAAGATGTTTAAACA 16958 || ||||| || | | || ||| ||| || || || | ||| |||| Sbjct 3240553 CCGAGATAAT-CTCGATGATACGCTCC-CGGCTGGGCCGT-TGCACCAAATGCCGGAACA 3240609 Query 16959 TCA-GACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAAT 17017 ||| |||| || || || ||||| || |||||||| | ||| | || || || || Sbjct 3240610 TCATGACA-GCAAAGTCACAATGCAAGCCCTCGTCGCGTGAGATCAACTCATTGGAGAAC 3240668 Query 17018 GTCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAA 17077 |||| || |||||| || || ||||| | |||||| |||| ||| || || Sbjct 3240669 GTCAGACCTGGCATCAGACCACGCTTCTTCAGCCAAAAGATCGAGGCAAAGCTTCCGCTG 3240728 Query 17078 AAGAATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGC-GTCTTT 17136 ||||| || ||||| |||| ||||||||||| | || ||| | | |||| | ||| Sbjct 3240729 AAGAAGATTCCCTCCACGGCAGCAAACGCGATAATTCTCTCGCCAAAGTTCGCCGCCTTC 3240788 Query 17137 GTTACGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTAT 17196 | | |||||| || |||| || || ||| |||| | ||| ||||| || Sbjct 3240789 GATGA-AATCCAAGAGAGCGCCCAATCAGCCTTTCGCTTGACAGCGGGCATTGTTTCAAT 3240847 Query 17197 GGCCTTAAATAATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGGCT 17256 ||| || || | | || ||| |||| | || | ||||| |||||||| || | ||| Sbjct 3240848 GGCATTGAACAGATAATCCCTTTGCTGTGGATCCCTAATATATGTATCGATCAGCACGCT 3240907 Query 17257 GTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTC 17316 |||||| || ||||| | ||||||||||| || ||||| || || || || || ||||| Sbjct 3240908 GTACATCTCCGAGTGCACATTCTCCATGGCAATTTGAAAGCCATAGAAACAACGAGCTTC 3240967 Query 17317 CGCTATTTGAACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCT 17376 | |||||| || ||| | ||| || || | ||||| || || || ||||| ||| Sbjct 3240968 GGTTATTTGCACCTCCTGGCTGAAGCGCTCGACCAGATTCTCATTAACAATGCCATCGGA 3241027 Query 17377 CGCGGCGAAAAACGCCAATATATGCTTAATGAAATATTTTTCGTCCGGTGTAAGAACGCG 17436 ||||| || || || | | |||| || || | |||| || | |||| | Sbjct 3241028 GGCGGCAAAGAAGGCGAGCACATGCGAGATAAAGTGACGCTCGTTATCAGTTA-AACGTG 3241086 Query 17437 -CCAGTCCTTTAAATCTTTGGATATATCCACTTCTTC 17472 ||||||| ||||| ||||| | |||||| || || Sbjct 3241087 CCCAGTCCGCCAAATCCTTGGAGAGATCCACCTCCTC 3241123 Score = 104 bits (114), Expect = 2e-17 Identities = 198/284 (70%), Gaps = 6/284 (2%) Strand=Plus/Minus Query 119783 TTCATATATCGTATCTTTCCGAACACGGTACGTTCCTTCCACGCTCTGTCGTGGAGCCCC 119842 |||||||| || ||||| ||||| | | ||||||||||| || |||||| | || Sbjct 611963 TTCATATAGCGAATCTTACCGAATATCGCGCGTTCCTTCCAGCCTTGGTCGTGAATGCCA 611904 Query 119843 GCTACGGCCCATAGGCATCCCACGTATCCGTTGGGATCCGTTCCATCTA-ACTCGTATTT 119901 | | || ||| | ||| || ||||| || || ||||| ||||| | ||| ||| || Sbjct 611903 CCGATGGACCACATGCAACCAACGTAGCCATTCGGATCGCGCCCATCCAGACT-GTACTT 611845 Query 119902 ATCGTTTAAGTAG-ATAC-AGACGCTTAACGCACTTTCAGGAGTCTCGCTCCATTCCAGT 119959 |||||| || ||| || | | || | || ||| || || || ||| ||||||| | Sbjct 611844 ATCGTTCAA-TAGTATGCTATACTC-TAGCGCCTGCTCCGGCGTTTCGGTCCATTCTAAA 611787 Query 119960 AtttttttAGCCCAGTACATACGTAAGTATCCATGCATTTTACCTTCACGAACCATTTGA 120019 || ||||| ||||| ||||| || ||| | || |||||||| || || |||| || Sbjct 611786 ATCTTTTTGGCCCAATACATGCGCAAGAAACCGTGCATTTTGCCCTCCTTCACCAGCTGT 611727 Query 120020 AGTTGTGCGGCGTTCCATAAGGGATCGTGTGTACGGGCGTGTTC 120063 || || || | |||||| ||| |||| || || | ||| || Sbjct 611726 AGCTGGGCCGAGTTCCACAAGTCGTCGTAGGTGCGCGAGTGCTC 611683 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517493502566040