Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20navojoa_20[refseq_20GCF_5F001654015.1_202016-05-09] 8,053 sequences; 115,885,644 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq4 91.5 2e-13 >seq4 Length=22154029 Score = 91.5 bits (100), Expect = 2e-13 Identities = 179/257 (70%), Gaps = 6/257 (2%) Strand=Plus/Minus Query 118936 TTCATGTATCGTATCTTTCCAAATACGGTACGCTCCTTCCATGCTCTGTCGTGGAGTCCT 118995 ||||| || || ||||| || |||| | || |||||||| || |||||| | || Sbjct 611963 TTCATATAGCGAATCTTACCGAATATCGCGCGTTCCTTCCAGCCTTGGTCGTGAATGCCA 611904 Query 118996 GCTACTGCCCATAGACATCCCACGTATCCGTTGGGATCTGTTCCGTCTA-ACTCGTACTT 119054 | | | ||| | || || ||||| || || ||||| || || | ||| |||||| Sbjct 611903 CCGATGGACCACATGCAACCAACGTAGCCATTCGGATCGCGCCCATCCAGACT-GTACTT 611845 Query 119055 ATCGTTTAAGTAG-ATAC-AGACGCTTAACGCACTTTCCGGAGTCTTACTCCATTCCAGT 119112 |||||| || ||| || | | || || | ||| ||||| || | ||||||| | Sbjct 611844 ATCGTTCAA-TAGTATGCTATACTCT-AGCGCCTGCTCCGGCGTTTCGGTCCATTCTAAA 611787 Query 119113 AtttttttAGCCCAGTACATACGTAAATACCCGTGCATTTTACCCTCGTTAATCATCTGA 119172 || ||||| ||||| ||||| || || | ||||||||||| ||||| || | || ||| Sbjct 611786 ATCTTTTTGGCCCAATACATGCGCAAGAAACCGTGCATTTTGCCCTCCTTCACCAGCTGT 611727 Query 119173 AGTTGTGCGGTGTTCCA 119189 || || || | |||||| Sbjct 611726 AGCTGGGCCGAGTTCCA 611710 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511362919747960