Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20navojoa_20[refseq_20GCF_5F001654015.1_202016-05-09] 8,053 sequences; 115,885,644 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq2 558 4e-154 >seq2 Length=4222574 Score = 558 bits (618), Expect = 4e-154 Identities = 1277/1902 (67%), Gaps = 34/1902 (2%) Strand=Plus/Minus Query 52808 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 52867 |||||||| || | | | || ||||| || || ||||| ||||| || || || ||| Sbjct 4216020 GTGAATTGTATAGCATTAGCCGCTGGTTTTGTGCGAAGATAATACATGCCGGTCTTAAGA 4215961 Query 52868 CCGAGACTCCATCCGTAAAAATGCATACTTGTTAGTTTGGAATAACTCGGATCTGCTATA 52927 || |||| |||||||| || ||||| ||| |||| | || || |||| Sbjct 4215960 CCTGCTTTCCACGAATAAAAATGGATTGATGTTAATTTTCCATAATTAGGTTCAGCTACG 4215901 Query 52928 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATG 52987 || ||||| | ||| ||||||||||| || |||||||| ||||| || ||||||||||| Sbjct 4215900 TGAATATTGAAAGACTGACTTTGATCAATAAAGGCTCCTCTGTCAGCCGCCATTTTTATA 4215841 Query 52988 ATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATA-AACTCGCTTAATATCTTCTGGAAG 53046 | | || || ||| ||||| | |||||||| || || | | | |||| | | Sbjct 4215840 GTTGATTTAATTGAAATCTCCCACACTGTTTTATACAAATCACGAATTTCCTTCGGAATT 4215781 Query 53047 GTTTG--TATTCTGAATAGATCCACCATCTACCATAATCCTATTCTTGATCTCATCATTC 53104 | || |||| || || || |||| || | || || ||| || ||||| |||| | Sbjct 4215780 GATTCAATATTTTGTATTGAACCACGATTTGATATTATTTGATTTTTCATCTCGTCATCC 4215721 Query 53105 CATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCA 53164 || || | ||||||||| | | || | || | || |||||||||||||| || Sbjct 4215720 CACAAATCAAGTTCGGTTAAATCACGGAGTAAGTGATGGTTTACTACTTGAAATTCGCCG 4215661 Query 53165 GACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATTTCCC 53224 |||||||||| | |||||||| || ||||| || || | |||||||| || ||| Sbjct 4215660 GACAATACTCGTCTTGTGTAAATGTTTGAAGTATAAGGCTCGAACGACTCATTGTTGCCC 4215601 Query 53225 AAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCG 53284 | ||||| ||||| ||||| || ||||| || || || | |||| |||||| | ||| Sbjct 4215600 ATTATTTGTGCAGTAGATGCTGTAGGCATGGGAGCAACGAGTAAAGAATTTCTGACACC- 4215542 Query 53285 TATGTTCTGATTTT-ATCTTTTA-GAGGTTCCCAATTCCAAAGATCCGACGGTACAACNN 53342 ||||| | | | || ||||| || ||||| | ||||||||| | || | | Sbjct 4215541 -ATGTTGCGCTATCGATTTTTTAAGAACATCCCAGTCCCAAAGATCTGTTGG--CGATTT 4215485 Query 53343 NNNNNNNNNNNNNT--TGTAGAATACCGTTACTGGC-GTACGATCCTACATATGTATCGT 53399 | || | ||| || || || | | || ||| ||||| || || | Sbjct 4215484 ATTCCACATATCATACTGCAAAATTCCTTTGCTTACTGGACT-TCCAACATAAGTCTCAT 4215426 Query 53400 ATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTT 53459 ||||||| || | | ||||| |||||| || || || | || || || || || |||| Sbjct 4215425 ATGGTCCATCTCTTTGAGCTAATTCACAGCTGGCTTCCAGAGCTCCATAGTATATAGTTT 4215366 Query 53460 CGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGATAATTTAAGAGAA 53519 |||| |||| || ||||| | ||| || | || || | | ||| | | | Sbjct 4215365 CGAAAATCTGCTGATTTAAAAGAAATGCATCATGACTTTCGTAAGAATACCGCATTAATA 4215306 Query 53520 TAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGA 53579 | |||||||| || || ||||| || ||||| || ||||| | || | ||| || Sbjct 4215305 TTAACGCGTCCGCAAACCCTTGGACTCCAATTCCAATAGGACGGTGGCGTAAATTTGATT 4215246 Query 53580 TTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGGTTTCTGACAA 53639 ||| ||||||||| | ||| || ||||| ||||| || ||||| || | |||| | || Sbjct 4215245 TTTTAGCTTCTGGCAAAGGGTAGTAATTTATATCAATTATTTTGTTTAAGTTTTTCGTAA 4215186 Query 53640 TTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAA---TTGTCCATCTATTACAAACA 53696 | ||| || || || || || ||| ||| | || | ||| | ||||||| Sbjct 4215185 CAATTTTAGTTACTTCTTTAAGCTTTTTAAAGTCATACGATTTTTCATGCGTCACAAACA 4215126 Query 53697 TGTTCAATGCAATAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTA 53756 | || | |||||| || |||| |||||| || |||| |||| | | | ||| | | Sbjct 4215125 TATTAAGTGCAATTGACGCCAAATTACACACAGCTATTTCATCTGGTGCTGAATACTCAA 4215066 Query 53757 TTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTT 53816 ||| || ||||| |||||||| || || || ||||| | ||||||||| || || ||| Sbjct 4215065 CTATTTCTGTGCACAGATTACTGCATTTTATAGTTCCAACATTTTGTTGGTTGCTTTTTC 4215006 Query 53817 TGTTACACGCATCCTTATAAAGAATGAATGGCGTACCAGTTTCAATCTGGGATTCTATAA 53876 ||||||||| ||||||| | | ||| | || ||||| || || | || ||||| |||| Sbjct 4215005 TGTTACACGAATCCTTAAATAACATGTAGGGTGTACCCGTCTCTACTTGAGATTCGATAA 4214946 Query 53877 TCGCTTTCCAGACGACAC-GAGCCTTTATTA-TAGATTTGTATCTCTT--TTCTCTTTCG 53932 | || ||| | || | ||||||| || | | |||| | ||| | |||| ||| Sbjct 4214945 TGGCAAACCAAA-GAGATTGAGCCTTAATAACTCGATTCG---CTCGTCCTTCTTGTTCA 4214890 Query 53933 TATAGTGTATACAATCGTTCAAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCA 53992 ||| |||| | |||||| || || |||||||||| | |||||||||| | Sbjct 4214889 TATTTGATATAAAGGTTTTCAAAATCTTCACCCCAAACATCTGGAAGGCCAGGACATTTA 4214830 Query 53993 TCCGGACACATCAACGACCACTCTCCGTCATC--CTTCA-CTCGTTTCATAAAGAGATCA 54049 | |||||||| | ||||| ||| |||| ||||| | ||||||||||| |||||| Sbjct 4214829 TGTGGACACATTAGTGACCAATCT---TCATTGGCTTCAACACGTTTCATAAAAAGATCA 4214773 Query 54050 GGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTT 54109 |||||||| | || | ||| ||||| | | | ||||||||| ||||| ||||| ||| Sbjct 4214772 GGAATCCACAATGCAAAAAACAGATCGCGCGCCCGATGTTCCTCCTTTCCAGTATTTTTT 4214713 Query 54110 TTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGTCATAACT 54169 ||||| || | || | | | ||| || ||||| || || ||||| || | | || Sbjct 4214712 TTAAGGTCCAAAAATTCGAAGACATCTGAGTGCCAAGGCTCTAAGTAAATAGCAAATGCT 4214653 Query 54170 CCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAAC 54229 ||||| | ||| || |||||||| | || | || |||||| ||||||| ||| Sbjct 4214652 CCAGGTCTTTTACCACCGCCCTGATCGACATAACGTGCCACATTATTAAAAACTCTTAAC 4214593 Query 54230 ATTGG-AATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACG 54288 ||||| | |||| ||||| || | ||| || || || | || | |||| | || || Sbjct 4214592 ATTGGTACTAAT-CCATTTGAAGTACCGTTCGTTCCACAAATTGATGTTCCTTTAGCTCG 4214534 Query 54289 AATATTACTAATTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTT 54348 |||| || || || || || |||||| || || || | ||||||| | | Sbjct 4214533 AATACAGTGAACATTCAGTCCAATGCCACCTGCCGACTTTGAAATCATTGCGCATTGCTC 4214474 Query 54349 TAACGTATCATAGATGCCCTCTATACTATCATCCATCAT-GTTAAGTAGAAAACAGCTAG 54407 | | | | | || || || || |||| || || |||||| ||||| || || Sbjct 4214473 AACTGATTTAAAAATCCCTTCAATTGAATCAGACACTATAGTTAAG-AGAAAGCATGAAG 4214415 Query 54408 ACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATT 54467 ||| ||| |||| | || | ||| ||| | || || || || || ||||| | Sbjct 4214414 ACAATTGTGGACGGTTTGTGGCTGCAGCAAAAAGAGTTGGTGATGCATGAGTAAAAAAAC 4214355 Query 54468 TTTCAGAAAGTAGATTGTACGTCTCGATAGCTGAGTCTATATCCCATTGATGAATTCCTA 54527 ||||| || | |||||| || || | || || || ||||| ||| || |||| Sbjct 4214354 GCTCAGATAGCAAATTGTAGGTTTCCACTGCAGAATCAATATCTTCGCCATGTATACCTA 4214295 Query 54528 CTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCA 54587 || |||||||||| || ||||| |||||||| | || || |||||||| |||| Sbjct 4214294 TAGCAACACGCATTAGCAAATGCTGTGGTCTTTCTGCTATTTTTCCATTTATTTTTAGCA 4214235 Query 54588 AGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAA 54647 |||| || || | || ||||| ||||| ||||| ||| ||| || || || || | Sbjct 4214234 AGTAAGACCGCTCAAGTGTCTTAAATCCAAAGTAGTTATATCCAAAATCACGATCATATA 4214175 Query 54648 TAATAACTGAGTTGAGTTTATCCTTATATTTGTTAACTACAT 54689 ||||| | ||||| | |||| || || ||||||| || Sbjct 4214174 TAATAGCAGAGTTCAAGCGATCCGAATTATTTTTAACTATAT 4214133 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593661834499440