Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20navojoa_20[refseq_20GCF_5F001654015.1_202016-05-09]
8,053 sequences; 115,885,644 total letters
Query= NC_001611.1
Length=185578
Score E
Sequences producing significant alignments: (Bits) Value
seq2 558 4e-154
>seq2
Length=4222574
Score = 558 bits (618), Expect = 4e-154
Identities = 1277/1902 (67%), Gaps = 34/1902 (2%)
Strand=Plus/Minus
Query 52808 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 52867
|||||||| || | | | || ||||| || || ||||| ||||| || || || |||
Sbjct 4216020 GTGAATTGTATAGCATTAGCCGCTGGTTTTGTGCGAAGATAATACATGCCGGTCTTAAGA 4215961
Query 52868 CCGAGACTCCATCCGTAAAAATGCATACTTGTTAGTTTGGAATAACTCGGATCTGCTATA 52927
|| |||| |||||||| || ||||| ||| |||| | || || ||||
Sbjct 4215960 CCTGCTTTCCACGAATAAAAATGGATTGATGTTAATTTTCCATAATTAGGTTCAGCTACG 4215901
Query 52928 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATG 52987
|| ||||| | ||| ||||||||||| || |||||||| ||||| || |||||||||||
Sbjct 4215900 TGAATATTGAAAGACTGACTTTGATCAATAAAGGCTCCTCTGTCAGCCGCCATTTTTATA 4215841
Query 52988 ATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATA-AACTCGCTTAATATCTTCTGGAAG 53046
| | || || ||| ||||| | |||||||| || || | | | |||| | |
Sbjct 4215840 GTTGATTTAATTGAAATCTCCCACACTGTTTTATACAAATCACGAATTTCCTTCGGAATT 4215781
Query 53047 GTTTG--TATTCTGAATAGATCCACCATCTACCATAATCCTATTCTTGATCTCATCATTC 53104
| || |||| || || || |||| || | || || ||| || ||||| |||| |
Sbjct 4215780 GATTCAATATTTTGTATTGAACCACGATTTGATATTATTTGATTTTTCATCTCGTCATCC 4215721
Query 53105 CATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCA 53164
|| || | ||||||||| | | || | || | || |||||||||||||| ||
Sbjct 4215720 CACAAATCAAGTTCGGTTAAATCACGGAGTAAGTGATGGTTTACTACTTGAAATTCGCCG 4215661
Query 53165 GACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATTTCCC 53224
|||||||||| | |||||||| || ||||| || || | |||||||| || |||
Sbjct 4215660 GACAATACTCGTCTTGTGTAAATGTTTGAAGTATAAGGCTCGAACGACTCATTGTTGCCC 4215601
Query 53225 AAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCG 53284
| ||||| ||||| ||||| || ||||| || || || | |||| |||||| | |||
Sbjct 4215600 ATTATTTGTGCAGTAGATGCTGTAGGCATGGGAGCAACGAGTAAAGAATTTCTGACACC- 4215542
Query 53285 TATGTTCTGATTTT-ATCTTTTA-GAGGTTCCCAATTCCAAAGATCCGACGGTACAACNN 53342
||||| | | | || ||||| || ||||| | ||||||||| | || | |
Sbjct 4215541 -ATGTTGCGCTATCGATTTTTTAAGAACATCCCAGTCCCAAAGATCTGTTGG--CGATTT 4215485
Query 53343 NNNNNNNNNNNNNT--TGTAGAATACCGTTACTGGC-GTACGATCCTACATATGTATCGT 53399
| || | ||| || || || | | || ||| ||||| || || |
Sbjct 4215484 ATTCCACATATCATACTGCAAAATTCCTTTGCTTACTGGACT-TCCAACATAAGTCTCAT 4215426
Query 53400 ATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTT 53459
||||||| || | | ||||| |||||| || || || | || || || || || ||||
Sbjct 4215425 ATGGTCCATCTCTTTGAGCTAATTCACAGCTGGCTTCCAGAGCTCCATAGTATATAGTTT 4215366
Query 53460 CGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGATAATTTAAGAGAA 53519
|||| |||| || ||||| | ||| || | || || | | ||| | | |
Sbjct 4215365 CGAAAATCTGCTGATTTAAAAGAAATGCATCATGACTTTCGTAAGAATACCGCATTAATA 4215306
Query 53520 TAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGA 53579
| |||||||| || || ||||| || ||||| || ||||| | || | ||| ||
Sbjct 4215305 TTAACGCGTCCGCAAACCCTTGGACTCCAATTCCAATAGGACGGTGGCGTAAATTTGATT 4215246
Query 53580 TTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGGTTTCTGACAA 53639
||| ||||||||| | ||| || ||||| ||||| || ||||| || | |||| | ||
Sbjct 4215245 TTTTAGCTTCTGGCAAAGGGTAGTAATTTATATCAATTATTTTGTTTAAGTTTTTCGTAA 4215186
Query 53640 TTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAA---TTGTCCATCTATTACAAACA 53696
| ||| || || || || || ||| ||| | || | ||| | |||||||
Sbjct 4215185 CAATTTTAGTTACTTCTTTAAGCTTTTTAAAGTCATACGATTTTTCATGCGTCACAAACA 4215126
Query 53697 TGTTCAATGCAATAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTA 53756
| || | |||||| || |||| |||||| || |||| |||| | | | ||| | |
Sbjct 4215125 TATTAAGTGCAATTGACGCCAAATTACACACAGCTATTTCATCTGGTGCTGAATACTCAA 4215066
Query 53757 TTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTT 53816
||| || ||||| |||||||| || || || ||||| | ||||||||| || || |||
Sbjct 4215065 CTATTTCTGTGCACAGATTACTGCATTTTATAGTTCCAACATTTTGTTGGTTGCTTTTTC 4215006
Query 53817 TGTTACACGCATCCTTATAAAGAATGAATGGCGTACCAGTTTCAATCTGGGATTCTATAA 53876
||||||||| ||||||| | | ||| | || ||||| || || | || ||||| ||||
Sbjct 4215005 TGTTACACGAATCCTTAAATAACATGTAGGGTGTACCCGTCTCTACTTGAGATTCGATAA 4214946
Query 53877 TCGCTTTCCAGACGACAC-GAGCCTTTATTA-TAGATTTGTATCTCTT--TTCTCTTTCG 53932
| || ||| | || | ||||||| || | | |||| | ||| | |||| |||
Sbjct 4214945 TGGCAAACCAAA-GAGATTGAGCCTTAATAACTCGATTCG---CTCGTCCTTCTTGTTCA 4214890
Query 53933 TATAGTGTATACAATCGTTCAAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCA 53992
||| |||| | |||||| || || |||||||||| | |||||||||| |
Sbjct 4214889 TATTTGATATAAAGGTTTTCAAAATCTTCACCCCAAACATCTGGAAGGCCAGGACATTTA 4214830
Query 53993 TCCGGACACATCAACGACCACTCTCCGTCATC--CTTCA-CTCGTTTCATAAAGAGATCA 54049
| |||||||| | ||||| ||| |||| ||||| | ||||||||||| ||||||
Sbjct 4214829 TGTGGACACATTAGTGACCAATCT---TCATTGGCTTCAACACGTTTCATAAAAAGATCA 4214773
Query 54050 GGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTT 54109
|||||||| | || | ||| ||||| | | | ||||||||| ||||| ||||| |||
Sbjct 4214772 GGAATCCACAATGCAAAAAACAGATCGCGCGCCCGATGTTCCTCCTTTCCAGTATTTTTT 4214713
Query 54110 TTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGTCATAACT 54169
||||| || | || | | | ||| || ||||| || || ||||| || | | ||
Sbjct 4214712 TTAAGGTCCAAAAATTCGAAGACATCTGAGTGCCAAGGCTCTAAGTAAATAGCAAATGCT 4214653
Query 54170 CCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAAC 54229
||||| | ||| || |||||||| | || | || |||||| ||||||| |||
Sbjct 4214652 CCAGGTCTTTTACCACCGCCCTGATCGACATAACGTGCCACATTATTAAAAACTCTTAAC 4214593
Query 54230 ATTGG-AATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACG 54288
||||| | |||| ||||| || | ||| || || || | || | |||| | || ||
Sbjct 4214592 ATTGGTACTAAT-CCATTTGAAGTACCGTTCGTTCCACAAATTGATGTTCCTTTAGCTCG 4214534
Query 54289 AATATTACTAATTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTT 54348
|||| || || || || || |||||| || || || | ||||||| | |
Sbjct 4214533 AATACAGTGAACATTCAGTCCAATGCCACCTGCCGACTTTGAAATCATTGCGCATTGCTC 4214474
Query 54349 TAACGTATCATAGATGCCCTCTATACTATCATCCATCAT-GTTAAGTAGAAAACAGCTAG 54407
| | | | | || || || || |||| || || |||||| ||||| || ||
Sbjct 4214473 AACTGATTTAAAAATCCCTTCAATTGAATCAGACACTATAGTTAAG-AGAAAGCATGAAG 4214415
Query 54408 ACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATT 54467
||| ||| |||| | || | ||| ||| | || || || || || ||||| |
Sbjct 4214414 ACAATTGTGGACGGTTTGTGGCTGCAGCAAAAAGAGTTGGTGATGCATGAGTAAAAAAAC 4214355
Query 54468 TTTCAGAAAGTAGATTGTACGTCTCGATAGCTGAGTCTATATCCCATTGATGAATTCCTA 54527
||||| || | |||||| || || | || || || ||||| ||| || ||||
Sbjct 4214354 GCTCAGATAGCAAATTGTAGGTTTCCACTGCAGAATCAATATCTTCGCCATGTATACCTA 4214295
Query 54528 CTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCA 54587
|| |||||||||| || ||||| |||||||| | || || |||||||| ||||
Sbjct 4214294 TAGCAACACGCATTAGCAAATGCTGTGGTCTTTCTGCTATTTTTCCATTTATTTTTAGCA 4214235
Query 54588 AGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAA 54647
|||| || || | || ||||| ||||| ||||| ||| ||| || || || || |
Sbjct 4214234 AGTAAGACCGCTCAAGTGTCTTAAATCCAAAGTAGTTATATCCAAAATCACGATCATATA 4214175
Query 54648 TAATAACTGAGTTGAGTTTATCCTTATATTTGTTAACTACAT 54689
||||| | ||||| | |||| || || ||||||| ||
Sbjct 4214174 TAATAGCAGAGTTCAAGCGATCCGAATTATTTTTAACTATAT 4214133
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 593661834499440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |