Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20navojoa_20[refseq_20GCF_5F001654015.1_202016-05-09] 8,053 sequences; 115,885,644 total letters Query= NC_001650.2 Length=184439 Score E Sequences producing significant alignments: (Bits) Value seq2 123 3e-23 >seq2 Length=4222574 Score = 123 bits (136), Expect = 3e-23 Identities = 185/263 (70%), Gaps = 6/263 (2%) Strand=Plus/Plus Query 145683 CAGGGGCTCCACGTGGTTGAGGTAGACGTGCGCGTCCCCCAGGACGTGGATGAAGTCCCC 145742 |||||| | ||| || || |||||||| || || ||||| |||| ||| || || Sbjct 2650273 CAGGGGATTCACATGATTATTATAGACGTGAGCATCACCCAGCGTATGGACGAAATCGCC 2650332 Query 145743 GGGCTCGAGGCCCGTGAGGTGGGCGACCATGTAGGTCAGCAGGGAGTAGCTGGCTATGTT 145802 ||||| | ||||| | || |||| ||||||||||| || || || ||| || || Sbjct 2650333 GGGCTTCAAACCCGTCACATGAGCGATCATGTAGGTCAACAAGGCATACGAGGCGATATT 2650392 Query 145803 GAAGGGCACCCCCAGCCCCATGTCCCCCGAGCGCTGGTACAGCTGGCAGGAGAGCTCCCC 145862 |||||| || ||||| |||||||| | |||||| ||||| |||||||| | || || Sbjct 2650393 GAAGGGTACTCCCAGACCCATGTCGGCGCTGCGCTGATACAGTTGGCAGGACAATTCACC 2650452 Query 145863 GCCCGCC------ACGTAGAACTGGCACAGGAGGTGGCAGGGCGGCAGGGCCATGGCGGG 145916 | || | || ||||| ||| |||| |||||| ||||| | ||||| ||| Sbjct 2650453 ACGCGACTGCGATACATAGAATTGGACCAGGCAGTGGCATGGCGGTAATGCCATTTGGGG 2650512 Query 145917 CAGGTCCGCCGGGTTCCAGGCGG 145939 | |||| || |||||||||| Sbjct 2650513 TATGTCCAAAGGATTCCAGGCGG 2650535 Score = 123 bits (136), Expect = 3e-23 Identities = 185/263 (70%), Gaps = 6/263 (2%) Strand=Plus/Plus Query 145683 CAGGGGCTCCACGTGGTTGAGGTAGACGTGCGCGTCCCCCAGGACGTGGATGAAGTCCCC 145742 |||||| | ||| || || |||||||| || || ||||| |||| ||| || || Sbjct 2651470 CAGGGGATTCACATGATTATTATAGACGTGAGCATCACCCAGCGTATGGACGAAATCGCC 2651529 Query 145743 GGGCTCGAGGCCCGTGAGGTGGGCGACCATGTAGGTCAGCAGGGAGTAGCTGGCTATGTT 145802 ||||| | ||||| | || |||| ||||||||||| || || || ||| || || Sbjct 2651530 GGGCTTCAAACCCGTCACATGAGCGATCATGTAGGTCAACAAGGCATACGAGGCGATATT 2651589 Query 145803 GAAGGGCACCCCCAGCCCCATGTCCCCCGAGCGCTGGTACAGCTGGCAGGAGAGCTCCCC 145862 |||||| || ||||| |||||||| | |||||| ||||| |||||||| | || || Sbjct 2651590 GAAGGGTACTCCCAGACCCATGTCGGCGCTGCGCTGATACAGTTGGCAGGACAATTCACC 2651649 Query 145863 GCCCGCC------ACGTAGAACTGGCACAGGAGGTGGCAGGGCGGCAGGGCCATGGCGGG 145916 | || | || ||||| ||| |||| |||||| ||||| | ||||| ||| Sbjct 2651650 ACGCGACTGCGATACATAGAATTGGACCAGGCAGTGGCATGGCGGTAATGCCATTTGGGG 2651709 Query 145917 CAGGTCCGCCGGGTTCCAGGCGG 145939 | |||| || |||||||||| Sbjct 2651710 TATGTCCAAAGGATTCCAGGCGG 2651732 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 590017401394120