Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20navojoa_20[refseq_20GCF_5F001654015.1_202016-05-09] 8,053 sequences; 115,885,644 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq4 329 3e-85 seq2 141 1e-28 seq3 116 4e-21 seq6 84.2 2e-11 >seq4 Length=22154029 Score = 329 bits (364), Expect = 3e-85 Identities = 506/719 (70%), Gaps = 2/719 (0%) Strand=Plus/Minus Query 116655 AGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTGTCCAAGGACACGAGCGACT 116714 |||||||||| || |||||||| || ||||||||||| || |||||||| | |||| Sbjct 3241149 AGGCCGAGGCCTCATTCTGGACTGTGGAGGAGGTGGATCTCTCCAAGGATTTGGCGGACT 3241090 Query 116715 GGGAGCGCTTGAACGACAACGAGCGCCATTTCATCAAGCACGTGCTGGCCTTTTTCGCCG 116774 ||| || || | || |||||||| || || ||| ||| ||||| ||||| || |||| Sbjct 3241089 GGGCACGTTTAACTGATAACGAGCGTCACTTTATCTCGCATGTGCTCGCCTTCTTTGCCG 3241030 Query 116775 CCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTTCGCTCAGGAGGTGCAGGTGG 116834 || ||| ||||| || || ||||||||||||||||| ||| ||||||||||| | Sbjct 3241029 CCTCCGATGGCATTGTTAATGAGAATCTGGTCGAGCGCTTCAGCCAGGAGGTGCAAATAA 3240970 Query 116835 CCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGAGAACGTGCACTCGGAAATGT 116894 |||| || || || ||||| |||||||| || ||||||||||| ||||||||||| |||| Sbjct 3240969 CCGAAGCTCGTTGTTTCTATGGCTTTCAAATTGCCATGGAGAATGTGCACTCGGAGATGT 3240910 Query 116895 ATTCGACCCTCATCGACACGTACGTGCGCTCTTCGGAGGAGAAGCTCCGTTTGTTGAACG 116954 | || ||||| || || | | | | || | | | | |||| || | Sbjct 3240909 ACAGCGTGCTGATCGATACATATATTAGGGATCCACAGCAAAGGGATTATCTGTTCAATG 3240850 Query 116955 CCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCG 117014 |||| || || ||||| ||||| ||||| || |||||||| ||||| | Sbjct 3240849 CCATTGAAACAATGCCCGCTGTCAAGCGAAAGGCTGATTGGGCGCTCTCTTGGATTTCAT 3240790 Query 117015 GCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCT 117074 | | ||| ||| |||||| | | | || || || ||||| ||||| |||||| Sbjct 3240789 CGAAGGCGGCGAACTTTGGCGAGAGAATTATCGCGTTTGCTGCCGTGGAGGGAATCTTCT 3240730 Query 117075 TTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGA 117134 | || || || ||| | || |||||||| ||||| || || || ||||| || |||| Sbjct 3240729 TCAGCGGAAGCTTTGCCTCGATCTTTTGGCTGAAGAAGCGTGGTCTGATGCCAGGTCTGA 3240670 Query 117135 CTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGT-TTG 117193 | ||| ||| ||| | ||||| | |||||||| ||||||| ||||||| |||| || Sbjct 3240669 CGTTCTCCAATGAGTTGATCTCACGCGACGAGGGCTTGCATTGTGACTTTG-CTGTCATG 3240611 Query 117194 CTGTTCAAGCATTTGGTGCAGCGACCGAGCGCGGCGCGCGTCAGGGAGATCGTCACCGAC 117253 ||||| |||||||||||| || || ||| || ||| ||| ||||| || | || Sbjct 3240610 ATGTTCCGGCATTTGGTGCAACGGCCCAGCCGGGAGCGTATCATCGAGATTATCTCGGAT 3240551 Query 117254 GCGGTCGCCATCGAGCAGCGCTTCCTCACCGAAGCGCTGCCGGTGCGTCTGCTGGGACTC 117313 || || |||| ||||| || ||||| || || ||||| || | || | || | Sbjct 3240550 GCTGTTACCATTGAGCAAGAGTTTCTCACAGATGCTCTGCCCGTCAATTTGATTGGCATG 3240491 Query 117314 AATTGCGAAACGATGTCGCAATACATCGAGTTCGTCGCCGACAGGCTGCTGCTCGAGCT 117372 ||||| | | |||||| ||||| || || || || || || | |||||| | || || Sbjct 3240490 AATTGTGCATTGATGTCCCAATATATTGAATTTGTGGCGGATCGTCTGCTGGTGGAACT 3240432 >seq2 Length=4222574 Score = 141 bits (156), Expect = 1e-28 Identities = 170/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 ||||||||||| ||||| ||||| ||||| ||||| ||||| ||| | || ||||| || Sbjct 180066 AAAATGCAAATCTTCGTKAAAACTCTCACCGGCAAGACCATTACCTTGGAGGTCGAGCCC 180125 Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 | |||| | | | | |||||| || || | |||||||| || ||||| | || Sbjct 180126 TCTGACACCATCGAGAATGTCAAGGCCAAGATCCAGGACAAAGAAGGGATCCCACCAGAT 180185 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 ||||| || || |||| || ||||| |||||||| || | ||||| || ||||||| Sbjct 180186 CAGCAGCGTCTGATCTTTGCCGGCAAGCAGCTGGAGGATGGACGCACTCTATCCGACTAC 180245 Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||| ||||||||| |||| |||| ||||| | || || | || ||| Sbjct 180246 AACATTCAGAAGGAGTCCACTTTGCACTTAGTGCTCCGTCTGCGTGGTGGC 180296 >seq3 Length=21835025 Score = 116 bits (128), Expect = 4e-21 Identities = 155/213 (73%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 |||||||| || ||||| ||||| | ||||| || ||||||||| | || || || | Sbjct 1954855 AAAATGCAGATCTTCGTTAAAACTTTGACGGGAAAGACCATCACCCTGGAGGTTGAGCCT 1954914 Query 40747 ACCGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 |||| | | | | |||| |||||| || |||| || || || ||||| ||| | || Sbjct 1954915 TCCGATACCATTGAGAACG-TCAAGGCCAAGATTCAAGATAAGGAAGGCATTCCCCCAGA 1954973 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 ||||| || || |||| ||| ||||| || ||||| || | ||||| | ||||| Sbjct 1954974 TCAGCAGCGTCTGATCTTCGCCGGCAAGCAACTGGAAGATGGTCGCACTTTGTCTGACTA 1955033 Query 40866 CAACATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||| |||||||||||| | || || ||||| || Sbjct 1955034 CAATATCCAGAAGGAGTCGACCCTCCATCTGGT 1955066 >seq6 Length=21059900 Score = 84.2 bits (92), Expect = 2e-11 Identities = 78/99 (79%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 40783 GACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGAC 40842 ||||| ||||| || ||| | || ||||| || | |||| ||| ||||| |||||||| Sbjct 7471270 GACAAGGAGGGTATTCCCCCAGATCAGCAGCGTTTGATCTTCGCTGGCAAGCAGCTGGAG 7471211 Query 40843 GACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAG 40881 || | |||||| || |||||||||||| ||||||||| Sbjct 7471210 GATGGGCGCACTCTGTCCGACTACAACATTCAGAAGGAG 7471172 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515167336747280