Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20navojoa_20[refseq_20GCF_5F001654015.1_202016-05-09] 8,053 sequences; 115,885,644 total letters Query= NC_002188.1 Length=288539 Score E Sequences producing significant alignments: (Bits) Value seq4 125 1e-23 >seq4 Length=22154029 Score = 125 bits (138), Expect = 1e-23 Identities = 188/261 (72%), Gaps = 6/261 (2%) Strand=Plus/Plus Query 189452 TGGAACGCGTCACAAATGCAGATGGTGAGAGAAGGAAAAATGCATAGTTTTTTACGAATG 189511 |||||| || | || | ||| |||||| || || |||||||| |||| || || ||| Sbjct 611710 TGGAACTCGGCCCAGCTACAGCTGGTGAAGGAGGGCAAAATGCACGGTTTCTTGCGCATG 611769 Query 189512 TATTGGGCTAAGAAGATACTTGAATGGACTAGAACACCTGA--AGACGCTTTGAGTTATA 189569 |||||||| || ||||| | |||||||| ||| || || || ||| | ||| |||| Sbjct 611770 TATTGGGCCAAAAAGATTTTAGAATGGACCGAAACGCCGGAGCAGGCGC-TAGAG-TATA 611827 Query 189570 GTAT-CTATTTGAACAACAAGTACGAACTAGACGGCACGGATCCTAACGGATACGTAGGT 189628 | || ||| |||||| | |||||| || || || ||||| || || ||||| ||| Sbjct 611828 GCATACTA-TTGAACGATAAGTACAGTCTGGATGGGCGCGATCCGAATGGCTACGTTGGT 611886 Query 189629 TGTATGTGGTCTATTTGCGGATTACACGATAGAGCGTGGAAAGAAAGACCGATATTTGGA 189688 || |||||||| || | || | ||||| || ||||| ||| | ||||||| || Sbjct 611887 TGCATGTGGTCCATCGGTGGCATTCACGACCAAGGCTGGAAGGAACGCGCGATATTCGGT 611946 Query 189689 AAGATAAGATATATGAATTAT 189709 ||||| | |||||||| ||| Sbjct 611947 AAGATTCGCTATATGAACTAT 611967 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 923103868702120