Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20navojoa_20[refseq_20GCF_5F001654015.1_202016-05-09]
8,053 sequences; 115,885,644 total letters
Query= NC_002331.1
Length=178733
Score E
Sequences producing significant alignments: (Bits) Value
seq4 96.9 4e-15
seq3 96.9 4e-15
seq3754 95.1 1e-14
seq6943 91.5 2e-13
seq716 91.5 2e-13
seq2 89.7 6e-13
>seq4
Length=22154029
Score = 96.9 bits (106), Expect = 4e-15
Identities = 67/76 (88%), Gaps = 0/76 (0%)
Strand=Plus/Minus
Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124
||||| || | |||||| |||||| ||||||||||||||||||||| ||||| ||||||
Sbjct 17509730 TCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACT 17509671
Query 60125 ATACTACCGAGGATTG 60140
|||||| |||||||||
Sbjct 17509670 ATACTATCGAGGATTG 17509655
Score = 89.7 bits (98), Expect = 6e-13
Identities = 69/82 (84%), Gaps = 0/82 (0%)
Strand=Plus/Minus
Query 60059 AAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTC 60118
||| | ||| | || | ||||| |||||| ||||||||||||||||||||| |||||
Sbjct 17510099 AAAATATCTGCCCGTCGTGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTA 17510040
Query 60119 ACCACTATACTACCGAGGATTG 60140
|||||||||||| |||||||||
Sbjct 17510039 ACCACTATACTATCGAGGATTG 17510018
>seq3
Length=21835025
Score = 96.9 bits (106), Expect = 4e-15
Identities = 149/210 (71%), Gaps = 2/210 (1%)
Strand=Plus/Minus
Query 42975 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 43034
|||||||| | || |||||| |||||||||||||| | || || || | || ||
Sbjct 1955468 ACCAAATGAAGAGTAGACTCCTTCTGAATATTGTAATCGGACAAGGTGCGACCATCTTCC 1955409
Query 43035 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 43094
|| ||||| || ||||| || || |||||||| || | || | || ||||||||| ||
Sbjct 1955408 AGTTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGAATGCCTTCCTTGTCC-TG 1955350
Query 43095 ATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTT 43153
| | || | || | || | | || ||| | ||||| || | |||||||| ||
Sbjct 1955349 AATCTTAGCCTTCACGTTCTCAATGGTATCGGATGGCTCCACCTCCAGAGTGATGGTCTT 1955290
Query 43154 GCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183
||| || || ||||| || |||||||||||
Sbjct 1955289 GCCAGTCAGGGTCTTCACGAAGATTTGCAT 1955260
Score = 91.5 bits (100), Expect = 2e-13
Identities = 64/73 (88%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124
||||| || | |||||| |||||| ||||||||||||||||||||| ||||| ||||||
Sbjct 12445355 TCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACT 12445414
Query 60125 ATACTACCGAGGA 60137
|||||| ||||||
Sbjct 12445415 ATACTATCGAGGA 12445427
>seq3754
Length=1718
Score = 95.1 bits (104), Expect = 1e-14
Identities = 67/77 (87%), Gaps = 0/77 (0%)
Strand=Plus/Plus
Query 60062 TTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACC 60121
||| |||| || | |||||| |||||| ||||||||||||||||||||| ||||| |||
Sbjct 941 TTTCCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACC 1000
Query 60122 ACTATACTACCGAGGAT 60138
||||||||| |||||||
Sbjct 1001 ACTATACTATCGAGGAT 1017
Score = 91.5 bits (100), Expect = 2e-13
Identities = 64/73 (88%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124
||||| || | |||||| |||||| ||||||||||||||||||||| ||||| ||||||
Sbjct 752 TCTCCCCGACTGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACT 693
Query 60125 ATACTACCGAGGA 60137
|||||| ||||||
Sbjct 692 ATACTATCGAGGA 680
>seq6943
Length=1146
Score = 91.5 bits (100), Expect = 2e-13
Identities = 64/73 (88%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124
||||| || | |||||| |||||| ||||||||||||||||||||| ||||| ||||||
Sbjct 675 TCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACT 734
Query 60125 ATACTACCGAGGA 60137
|||||| ||||||
Sbjct 735 ATACTATCGAGGA 747
>seq716
Length=1004
Score = 91.5 bits (100), Expect = 2e-13
Identities = 64/73 (88%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124
||||| || | |||||| |||||| ||||||||||||||||||||| ||||| ||||||
Sbjct 327 TCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACT 268
Query 60125 ATACTACCGAGGA 60137
|||||| ||||||
Sbjct 267 ATACTATCGAGGA 255
>seq2
Length=4222574
Score = 89.7 bits (98), Expect = 6e-13
Identities = 151/219 (69%), Gaps = 0/219 (0%)
Strand=Plus/Minus
Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027
||| | ||| || ||||| ||| |||||| ||||| ||||| || | ||||| || |
Sbjct 180284 ACGGAGCACTAAGTGCAAAGTGGACTCCTTCTGAATGTTGTAGTCGGATAGAGTGCGTCC 180225
Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087
|| || |||||||| || || || || || |||||||| || | || | | || ||
Sbjct 180224 ATCCTCCAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGATCTGGTGGGATCCCTTCTTT 180165
Query 43088 GTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGAT 43147
|||| ||| || |||| || | | ||||| | || || || | || ||
Sbjct 180164 GTCCTGGATCTTGGCCTTGACATTCTCGATGGTGTCAGAGGGCTCGACCTCCAAGGTAAT 180105
Query 43148 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 43186
||| ||||| || || || || || ||||||||||||||
Sbjct 180104 GGTCTTGCCGGTGAGAGTTTTMACGAAGATTTGCATTTT 180066
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 571760039410840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |