Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20navojoa_20[refseq_20GCF_5F001654015.1_202016-05-09] 8,053 sequences; 115,885,644 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq4 96.9 4e-15 seq3 96.9 4e-15 seq3754 95.1 1e-14 seq6943 91.5 2e-13 seq716 91.5 2e-13 seq2 89.7 6e-13 >seq4 Length=22154029 Score = 96.9 bits (106), Expect = 4e-15 Identities = 67/76 (88%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | |||||| |||||| ||||||||||||||||||||| ||||| |||||| Sbjct 17509730 TCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACT 17509671 Query 60125 ATACTACCGAGGATTG 60140 |||||| ||||||||| Sbjct 17509670 ATACTATCGAGGATTG 17509655 Score = 89.7 bits (98), Expect = 6e-13 Identities = 69/82 (84%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 60059 AAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTC 60118 ||| | ||| | || | ||||| |||||| ||||||||||||||||||||| ||||| Sbjct 17510099 AAAATATCTGCCCGTCGTGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTA 17510040 Query 60119 ACCACTATACTACCGAGGATTG 60140 |||||||||||| ||||||||| Sbjct 17510039 ACCACTATACTATCGAGGATTG 17510018 >seq3 Length=21835025 Score = 96.9 bits (106), Expect = 4e-15 Identities = 149/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 42975 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 43034 |||||||| | || |||||| |||||||||||||| | || || || | || || Sbjct 1955468 ACCAAATGAAGAGTAGACTCCTTCTGAATATTGTAATCGGACAAGGTGCGACCATCTTCC 1955409 Query 43035 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 43094 || ||||| || ||||| || || |||||||| || | || | || ||||||||| || Sbjct 1955408 AGTTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGAATGCCTTCCTTGTCC-TG 1955350 Query 43095 ATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTT 43153 | | || | || | || | | || ||| | ||||| || | |||||||| || Sbjct 1955349 AATCTTAGCCTTCACGTTCTCAATGGTATCGGATGGCTCCACCTCCAGAGTGATGGTCTT 1955290 Query 43154 GCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 ||| || || ||||| || ||||||||||| Sbjct 1955289 GCCAGTCAGGGTCTTCACGAAGATTTGCAT 1955260 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | |||||| |||||| ||||||||||||||||||||| ||||| |||||| Sbjct 12445355 TCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACT 12445414 Query 60125 ATACTACCGAGGA 60137 |||||| |||||| Sbjct 12445415 ATACTATCGAGGA 12445427 >seq3754 Length=1718 Score = 95.1 bits (104), Expect = 1e-14 Identities = 67/77 (87%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 60062 TTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACC 60121 ||| |||| || | |||||| |||||| ||||||||||||||||||||| ||||| ||| Sbjct 941 TTTCCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACC 1000 Query 60122 ACTATACTACCGAGGAT 60138 ||||||||| ||||||| Sbjct 1001 ACTATACTATCGAGGAT 1017 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | |||||| |||||| ||||||||||||||||||||| ||||| |||||| Sbjct 752 TCTCCCCGACTGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACT 693 Query 60125 ATACTACCGAGGA 60137 |||||| |||||| Sbjct 692 ATACTATCGAGGA 680 >seq6943 Length=1146 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | |||||| |||||| ||||||||||||||||||||| ||||| |||||| Sbjct 675 TCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACT 734 Query 60125 ATACTACCGAGGA 60137 |||||| |||||| Sbjct 735 ATACTATCGAGGA 747 >seq716 Length=1004 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | |||||| |||||| ||||||||||||||||||||| ||||| |||||| Sbjct 327 TCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACT 268 Query 60125 ATACTACCGAGGA 60137 |||||| |||||| Sbjct 267 ATACTATCGAGGA 255 >seq2 Length=4222574 Score = 89.7 bits (98), Expect = 6e-13 Identities = 151/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 ||| | ||| || ||||| ||| |||||| ||||| ||||| || | ||||| || | Sbjct 180284 ACGGAGCACTAAGTGCAAAGTGGACTCCTTCTGAATGTTGTAGTCGGATAGAGTGCGTCC 180225 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087 || || |||||||| || || || || || |||||||| || | || | | || || Sbjct 180224 ATCCTCCAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGATCTGGTGGGATCCCTTCTTT 180165 Query 43088 GTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGAT 43147 |||| ||| || |||| || | | ||||| | || || || | || || Sbjct 180164 GTCCTGGATCTTGGCCTTGACATTCTCGATGGTGTCAGAGGGCTCGACCTCCAAGGTAAT 180105 Query 43148 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 43186 ||| ||||| || || || || || |||||||||||||| Sbjct 180104 GGTCTTGCCGGTGAGAGTTTTMACGAAGATTTGCATTTT 180066 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571760039410840