Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20navojoa_20[refseq_20GCF_5F001654015.1_202016-05-09]
8,053 sequences; 115,885,644 total letters
Query= NC_002642.1
Length=144575
Score E
Sequences producing significant alignments: (Bits) Value
seq4 181 1e-40
>seq4
Length=22154029
Score = 181 bits (200), Expect = 1e-40
Identities = 580/892 (65%), Gaps = 6/892 (1%)
Strand=Plus/Plus
Query 15881 TAACTTTAAAAATCAATATCTAGAGAAAACACATTATCTTTTTTATTTGACATAACTGAC 15940
||| |||| ||||| ||| || | ||||||||| ||| ||| ||| |||| |
Sbjct 3240261 TAATTTTAGAAATCCGCATCAAGTGTAAACACATTGTCTAGCCGATTCGACGTAACGCCC 3240320
Query 15941 ATTTTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATA 16000
|| ||||||||| | |||| |||| || || || || ||||| || || | || ||
Sbjct 3240321 ATACGTTGATATTCTCCAACTTTCTTCTCGAAAAAGTTAGTTTTGCCATCCAGCGAGATC 3240380
Query 16001 TTTTCCATAAAATCAAAAGGATTTTTTGAACAATAGTATTTATCGCATCCCAATTCCAAC 16060
| ||||| || || ||||| || | | ||| ||| | || | ||||| |
Sbjct 3240381 ATCTCCATGAAGGTGAATGGATTCTTCGTATTGTAGATTTTGCCAACACCGAGTTCCACC 3240440
Query 16061 AATAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCACAGTTCATTCCTATT 16120
| | | ||||||||||||||| ||||| || ||| || |||| ||||| || ||
Sbjct 3240441 AGCAGACGATCCGCCACAAATTCAATATATTGGGACATCAATGCACAATTCATGCCAATC 3240500
Query 16121 AATTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAACCGCTTCAATGATT 16180
|| || || || | || ||||| | ||| | || || || |||| || || |||
Sbjct 3240501 AAATTGACGGGCAGAGCATCTGTGAGAAACTCTTGCTCAATGGTAACAGCATCCGAGATA 3240560
Query 16181 ATATCTCTTACTACACTATTTAACGGAGGGTT-TAATAAGTGTTTAAACATTATACAAGC 16239
|| || | | ||| || || ||| | || || ||||| || |||
Sbjct 3240561 ATCTCGATGA-TACGCTCCCGGCTGGGCCGTTGCACCAAATGCCGGAACATCATGACAGC 3240619
Query 16240 AAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGG 16299
||| ||||||||||| || ||||| | || ||||| || || || || ||||||||
Sbjct 3240620 AAAGTCACAATGCAAGCCCTCGTCGCGTGAGATCAACTCATTGGAGAACGTCAGACCTGG 3240679
Query 16300 CATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACC 16359
||| || || || || || | |||||| || | |||||| || ||||| || ||
Sbjct 3240680 CATCAGACCACGCTTCTTCAGCCAAAAGATCGAGGCAAAGCTTCCGCTGAAGAAGATTCC 3240739
Query 16360 TTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTTC-TAtttttactttctatcc 16418
|| || || ||||| || | | || ||| || | |||| || | ||||
Sbjct 3240740 CTCCACGGCAGCAAACGCGATAATTCTCTCGCC-AAAGTTCGCCGCCTTCGATGAAATCC 3240798
Query 16419 attttttagcccaatttgctttttgtttAACACAGTTCATGTTCTCTATTGCATTAAATA 16478
| ||||||| || ||| | || ||| | ||| | || || ||||| || |
Sbjct 3240799 AAGAGAGCGCCCAATCAGCCTTTCGCTTGACAGCGGGCATTGTTTCAATGGCATTGAACA 3240858
Query 16479 AATAAt-ttttttCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATACATTTCT 16537
||||| ||| || || ||| |||||| ||||| || || | || ||||| ||
Sbjct 3240859 GATAATCCCTTTGCTGTG-GATCCCTAATATATGTATCGATCAGCACGCTGTACATCTCC 3240917
Query 16538 GAATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATATTTGT 16597
|| || | ||||||||| || || ||||| ||||| || || | |||||||| ||||||
Sbjct 3240918 GAGTGCACATTCTCCATGGCAATTTGAAAGCCATAGAAACAACGAGCTTCGGTTATTTGC 3240977
Query 16598 ACTTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCGCTAGCTGCAAAA 16657
|| || | || | || | | || || ||||| || |||||| || |||||
Sbjct 3240978 ACCTCCTGGCTGAAGCGCTCGACCAGATTCTCATTAACAATGCCATCGGAGGCGGCAAAG 3241037
Query 16658 AACGCAAGTATGTGTTTAATAAAAtttttttCGTTATCTGAAAGTTTTAACCAGTCAGAA 16717
|| || || | || ||||| | |||||||| | | | |||||| |
Sbjct 3241038 AAGGCGAGCACATGCGAGATAAAGTGACGCTCGTTATCAGTTAAACGTGCCCAGTCCGCC 3241097
Query 16718 AAATCTTTTGATAAATCGACCTCTTCTACAGTCCAAAAAGAAGCAACAGCCT 16769
||||| || || | ||| ||||| || |||||||| || || || | ||||
Sbjct 3241098 AAATCCTTGGAGAGATCCACCTCCTCCACAGTCCAGAATGAGGCCTCGGCCT 3241149
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 462465442385800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |