Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20navojoa_20[refseq_20GCF_5F001654015.1_202016-05-09] 8,053 sequences; 115,885,644 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq4 181 1e-40 >seq4 Length=22154029 Score = 181 bits (200), Expect = 1e-40 Identities = 580/892 (65%), Gaps = 6/892 (1%) Strand=Plus/Plus Query 15881 TAACTTTAAAAATCAATATCTAGAGAAAACACATTATCTTTTTTATTTGACATAACTGAC 15940 ||| |||| ||||| ||| || | ||||||||| ||| ||| ||| |||| | Sbjct 3240261 TAATTTTAGAAATCCGCATCAAGTGTAAACACATTGTCTAGCCGATTCGACGTAACGCCC 3240320 Query 15941 ATTTTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATA 16000 || ||||||||| | |||| |||| || || || || ||||| || || | || || Sbjct 3240321 ATACGTTGATATTCTCCAACTTTCTTCTCGAAAAAGTTAGTTTTGCCATCCAGCGAGATC 3240380 Query 16001 TTTTCCATAAAATCAAAAGGATTTTTTGAACAATAGTATTTATCGCATCCCAATTCCAAC 16060 | ||||| || || ||||| || | | ||| ||| | || | ||||| | Sbjct 3240381 ATCTCCATGAAGGTGAATGGATTCTTCGTATTGTAGATTTTGCCAACACCGAGTTCCACC 3240440 Query 16061 AATAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCACAGTTCATTCCTATT 16120 | | | ||||||||||||||| ||||| || ||| || |||| ||||| || || Sbjct 3240441 AGCAGACGATCCGCCACAAATTCAATATATTGGGACATCAATGCACAATTCATGCCAATC 3240500 Query 16121 AATTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAACCGCTTCAATGATT 16180 || || || || | || ||||| | ||| | || || || |||| || || ||| Sbjct 3240501 AAATTGACGGGCAGAGCATCTGTGAGAAACTCTTGCTCAATGGTAACAGCATCCGAGATA 3240560 Query 16181 ATATCTCTTACTACACTATTTAACGGAGGGTT-TAATAAGTGTTTAAACATTATACAAGC 16239 || || | | ||| || || ||| | || || ||||| || ||| Sbjct 3240561 ATCTCGATGA-TACGCTCCCGGCTGGGCCGTTGCACCAAATGCCGGAACATCATGACAGC 3240619 Query 16240 AAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGG 16299 ||| ||||||||||| || ||||| | || ||||| || || || || |||||||| Sbjct 3240620 AAAGTCACAATGCAAGCCCTCGTCGCGTGAGATCAACTCATTGGAGAACGTCAGACCTGG 3240679 Query 16300 CATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACC 16359 ||| || || || || || | |||||| || | |||||| || ||||| || || Sbjct 3240680 CATCAGACCACGCTTCTTCAGCCAAAAGATCGAGGCAAAGCTTCCGCTGAAGAAGATTCC 3240739 Query 16360 TTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTTC-TAtttttactttctatcc 16418 || || || ||||| || | | || ||| || | |||| || | |||| Sbjct 3240740 CTCCACGGCAGCAAACGCGATAATTCTCTCGCC-AAAGTTCGCCGCCTTCGATGAAATCC 3240798 Query 16419 attttttagcccaatttgctttttgtttAACACAGTTCATGTTCTCTATTGCATTAAATA 16478 | ||||||| || ||| | || ||| | ||| | || || ||||| || | Sbjct 3240799 AAGAGAGCGCCCAATCAGCCTTTCGCTTGACAGCGGGCATTGTTTCAATGGCATTGAACA 3240858 Query 16479 AATAAt-ttttttCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATACATTTCT 16537 ||||| ||| || || ||| |||||| ||||| || || | || ||||| || Sbjct 3240859 GATAATCCCTTTGCTGTG-GATCCCTAATATATGTATCGATCAGCACGCTGTACATCTCC 3240917 Query 16538 GAATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATATTTGT 16597 || || | ||||||||| || || ||||| ||||| || || | |||||||| |||||| Sbjct 3240918 GAGTGCACATTCTCCATGGCAATTTGAAAGCCATAGAAACAACGAGCTTCGGTTATTTGC 3240977 Query 16598 ACTTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCGCTAGCTGCAAAA 16657 || || | || | || | | || || ||||| || |||||| || ||||| Sbjct 3240978 ACCTCCTGGCTGAAGCGCTCGACCAGATTCTCATTAACAATGCCATCGGAGGCGGCAAAG 3241037 Query 16658 AACGCAAGTATGTGTTTAATAAAAtttttttCGTTATCTGAAAGTTTTAACCAGTCAGAA 16717 || || || | || ||||| | |||||||| | | | |||||| | Sbjct 3241038 AAGGCGAGCACATGCGAGATAAAGTGACGCTCGTTATCAGTTAAACGTGCCCAGTCCGCC 3241097 Query 16718 AAATCTTTTGATAAATCGACCTCTTCTACAGTCCAAAAAGAAGCAACAGCCT 16769 ||||| || || | ||| ||||| || |||||||| || || || | |||| Sbjct 3241098 AAATCCTTGGAGAGATCCACCTCCTCCACAGTCCAGAATGAGGCCTCGGCCT 3241149 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462465442385800