Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20navojoa_20[refseq_20GCF_5F001654015.1_202016-05-09] 8,053 sequences; 115,885,644 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq4 161 1e-34 >seq4 Length=22154029 Score = 161 bits (178), Expect = 1e-34 Identities = 541/830 (65%), Gaps = 14/830 (2%) Strand=Plus/Plus Query 13902 TAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCA 13961 |||||||||| ||||||||| | |||| | || || || ||||||||||| || |||| Sbjct 3240313 TAACGCCCATACGTTGATATTCTCCAACTTTCTTCTCGAAAAAGTTAGTTTTGCCATCCA 3240372 Query 13962 GTGATATATTTTCCATAAAATCAAATGGATTTGTTGACATAAACACTTTATCACAACCTA 14021 | || || | ||||| || |||||||| | | | | | ||| || ||| | Sbjct 3240373 GCGAGATCATCTCCATGAAGGTGAATGGATTCTTCGTATTGTAGATTTTGCCAACACCGA 3240432 Query 14022 GTTCTAATAGTAATCTATCCGCAATGAACTCAATATATTGAGACATTAAATCACAATTCA 14081 |||| | || | | |||||| | || ||||||||||| ||||| || ||||||||| Sbjct 3240433 GTTCCACCAGCAGACGATCCGCCACAAATTCAATATATTGGGACATCAATGCACAATTCA 3240492 Query 14082 TACCTATTAGTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCT 14141 | || || | || || || | || || | ||| |||| || || | ||||| | Sbjct 3240493 TGCCAATCAAATTGACGGGCAGAGCATCTGTGAGAAACTCTTGCTCAATGGTAACAGCAT 3240552 Query 14142 CGTTTATAATAATCG-TAATAATTTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATT 14200 | ||||| ||| | ||| || || | | | ||| || || Sbjct 3240553 CCGAGATAAT-CTCGATGATACGCTCCCGGCTGGGCCGTTGCACCAAATGCCGGAACATC 3240611 Query 14201 A-AACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGT 14259 | ||| ||||| |||||||| | |||||| || | || | || || || || || Sbjct 3240612 ATGACA-GCAAAGTCACAATGCAAGCCCTCGTCGCGTGAGATCAACTCATTGGAGAACGT 3240670 Query 14260 TAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAA 14319 | |||||||||| || || || || | |||||| || | || || |||| || Sbjct 3240671 CAGACCTGGCATCAGACCACGCTTCTTCAGCCAAAAGATCGAGGCAAAGCTTCCGCTGAA 3240730 Query 14320 GAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAA---CGATGCTTTTTT 14376 ||| |||||||| || ||||||||||| || | || || ||||| || || || Sbjct 3240731 GAAGATTCCCTCCACGGCAGCAAACGCGATAATTCTCTCGCCAAAGTTCGCCGC--CTTC 3240788 Query 14377 GTTCGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAAT 14436 | | || ||||| ||||| |||| ||| || | | |||||||||||| Sbjct 3240789 GAT-GAAATCCAAGAGAGCGCCCAATCAGCCTTTCGCTTGACAGCGGGCATTGTTTCAAT 3240847 Query 14437 AGCATTAAATAAAT-GTTCCTTCTCTTTAG-TACTTGAAATGTATGTATCAATAAGTAAG 14494 ||||| || | || | |||| || | | | | | ||| |||||||| || || | | Sbjct 3240848 GGCATTGAACAGATAATCCCTTTGCTGTGGATCCCT--AATATATGTATCGATCAGCACG 3240905 Query 14495 CTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCT 14554 || ||||| || ||||| | || ||||| || || ||||| ||||| ||||| | |||| Sbjct 3240906 CTGTACATCTCCGAGTGCACATTCTCCATGGCAATTTGAAAGCCATAGAAACAACGAGCT 3240965 Query 14555 TCTGACCATTGTACCTCTGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCA 14614 || | ||| ||||| | || | ||| ||| ||| |||||||| || ||||| Sbjct 3240966 TCGGTTATTTGCACCTCCTGGCTGAAGCGCTCGACCAGATTCTCATTAACAATGCCATCG 3241025 Query 14615 CTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGCTGAGTTTT 14674 || ||||| || || | | | ||||||| |||| | || | | | Sbjct 3241026 GAGGCGGCAAAGAAGGCGAGCACATGCGAGATAAAGTGACGCTCGTTATCAGTTAAACGT 3241085 Query 14675 TTCCAATCGGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAA 14724 ||| || || |||||||| || ||||| || || || || ||||| || Sbjct 3241086 GCCCAGTCCGCCAAATCCTTGGAGAGATCCACCTCCTCCACAGTCCAGAA 3241135 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482297045886040