Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20navojoa_20[refseq_20GCF_5F001654015.1_202016-05-09]
8,053 sequences; 115,885,644 total letters
Query= NC_003102.1
Length=139342
Score E
Sequences producing significant alignments: (Bits) Value
seq2 464 6e-126
seq4 260 1e-64
seq3 113 4e-20
>seq2
Length=4222574
Score = 464 bits (514), Expect = 6e-126
Identities = 1256/1912 (66%), Gaps = 67/1912 (4%)
Strand=Plus/Minus
Query 22112 ACTGTAAACTGTATGGCGTTTGCGGCCGGTTTGGTGCGAAGATAATACATGCCCGTCTTC 22171
|| || || ||||| || || || || ||||| |||||||||||||||||||| |||||
Sbjct 4216023 ACAGTGAATTGTATAGCATTAGCCGCTGGTTTTGTGCGAAGATAATACATGCCGGTCTTA 4215964
Query 22172 AGACCCATCTTCCACGCGTAAAAATGTATCGACGTCAATTTTCCATAACTCGGCAAGTCC 22231
||||| ||||||| |||||||| || || || |||||||||||| | || |
Sbjct 4215963 AGACCTGCTTTCCACGAATAAAAATGGATTGATGTTAATTTTCCATAATTAGGTTCAGCT 4215904
Query 22232 ATGTACACATTGAACGACTGACTCTGATCGATAAACGCTCCTCGATCGGCGGCCATATTT 22291
| || | |||||| |||||||| ||||| ||||| ||||||| || || ||||| |||
Sbjct 4215903 ACGTGAATATTGAAAGACTGACTTTGATCAATAAAGGCTCCTCTGTCAGCCGCCATTTTT 4215844
Query 22292 ATCAATGTACGCATCGACATTTCCCATACGGTCTTGTACAGTTGCCTGATCTCTAACGGT 22351
|| || || || || ||||| || || || |||| | | || || |||
Sbjct 4215843 ATAGTTGATTTAATTGAAATCTCCCACACTGTTTTATACAAATCACGAATTTCCTTCGGA 4215784
Query 22352 ATCGATTCGATCCTCTGGACGGACCCGTTATTGTGTATGATCAAATTTTTAATCGTATCG 22411
|| ||||| || | || | || || ||| ||| || |||||| ||| ||
Sbjct 4215783 ATTGATTCAATATTTTGTATTGAACCACGATTTGATATTATTTGATTTTTCATCTCGTCA 4215724
Query 22412 TTCCACAAACCGATGGCGGTCAAATCTTTGACCAGATGACGGTTCACCACTTGAAACTCG 22471
| ||||||| | | |||| ||||| || | ||| |||| || |||||||| |||
Sbjct 4215723 TCCCACAAATCAAGTTCGGTTAAATCACGGAGTAAGTGATGGTTTACTACTTGAAATTCG 4215664
Query 22472 CCGGACAAGACGCGGCGTTGGTAAATGTTGGATGTGAACGGTTCGAAAGATTCATTGTTT 22531
|||||||| || || | | ||||||||| || || | || ||||| || ||||||||
Sbjct 4215663 CCGGACAATACTCGTCTTGTGTAAATGTTTGAAGTATAAGGCTCGAACGACTCATTGTTG 4215604
Query 22532 CCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCAACAGTAGCGAGTTTCTCAAG 22591
|||| ||| || || || || || || ||||| || || | |||| || ||||| |
Sbjct 4215603 CCCATTATTTGTGCAGTAGATGCTGTAGGCATGGGAGCAACGAGTAAAGAATTTCTGACA 4215544
Query 22592 CCGTGCT------TTGAAATTTTACTCTTGAGCATCGACCAGTCCCACAGATCGGACGGC 22645
|| || | | || ||||| || |||| ||||||||| ||||| | |||
Sbjct 4215543 CCATGTTGCGCTATCGATTTTTTA----AGAACATC--CCAGTCCCAAAGATCTGTTGGC 4215490
Query 22646 GTCACATTGTCCCACATATCGTATTGCAACACGCCGCGACTCGCCGGGCTGCCTTCGTAC 22705
| || | ||||||||| || ||||| | || || | || || || | ||
Sbjct 4215489 G---ATTTATTCCACATATCATACTGCAAAATTCCTTTGCTTACTGGACTTCCAACATAA 4215433
Query 22706 GTTTCGTACGGACCATATATCGCGGCAAGTTCGCAGCTCGCCTCCAACGCGCCGTAATAT 22765
|| || || || |||| | | || | ||| ||||| || |||| || || || |||
Sbjct 4215432 GTCTCATATGGTCCATCTCTTTGAGCTAATTCACAGCTGGCTTCCAGAGCTCCATAGTAT 4215373
Query 22766 ATAGTCTCGAAGATTTTCTTGTTCAATTCGGCGGCGGCGACGCTTTCGTACGGCATA-CG 22824
||||| ||||| || | || || || || | |||||||| | ||| ||
Sbjct 4215372 ATAGTTTCGAAAATCTGCTGATTTAAAAGAAATGCATCATGACTTTCGTA-AGAATACCG 4215314
Query 22825 CATCATCACGAACGCGTCCGCCATACCCTGAACGCCTATACCGATCGGTCGGTTTTTCAG 22884
||| | | ||||||||||| | || || || || || || || || |||| |
Sbjct 4215313 CATTAATATTAACGCGTCCGCAAACCCTTGGACTCCAATTCCAATAGGACGGTGGCGTAA 4215254
Query 22885 ATTCGACACTTTTGCCTCGGGCAAAGGATACCAATTCGAATCGATTGTTCTGTTCAAGTT 22944
||| || ||| || || |||||||| || |||| ||| ||| || |||| |||||
Sbjct 4215253 ATTTGATTTTTTAGCTTCTGGCAAAGGGTAGTAATTTATATCAATTATTTTGTTTAAGTT 4215194
Query 22945 TCTGGTCACAATTTTCGTTATNNNNNNNNNNNNNTCAAAGTCGTAAACGCCCGATTGTAC 23004
| | || |||||||| |||| | |||||| || ||||| | |
Sbjct 4215193 TTTCGTAACAATTTTAGTTACTTCTTTAAGCTTTTTAAAGTCATA------CGATTTTTC 4215140
Query 23005 A------ACAAACTTGTTGACGGCGATCGAGGCAAGATTGCATACGGCCACCTCGTCTTT 23058
| |||||| | || | || || || || | ||| || || || | || |||
Sbjct 4215139 ATGCGTCACAAACATATTAAGTGCAATTGACGCCAAATTACACACAGCTATTTCATCTGG 4215080
Query 23059 GGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTGCCCAAATTGCT 23118
| | ||||| || ||||| || || ||||| || || ||||| || || | |||
Sbjct 4215079 TGCTGAATACTCAACTATTTCTGTGCACAGATTACTGCATTTTATAGTTCCAACATTTTG 4215020
Query 23119 CTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGAC 23178
||||||||||||| || ||||||||||| | | |||||| || || |||||||| ||
Sbjct 4215019 TTGGTTGCTTTTTCTGTTACACGAATCCTTAAATAACATGTAGGGTGTACCCGTCTCTAC 4214960
Query 23179 CTGCGACTCGATGATCGCTCGCCACATAGTCTGAGCGT---GAACACG--TCGCACGTAC 23233
|| || ||||| || || ||| | || ||||| | ||| || |||| |||
Sbjct 4214959 TTGAGATTCGATAATGGCAAACCAAAGAGATTGAGCCTTAATAACTCGATTCGCTCGT-- 4214902
Query 23234 CTGCCTTCTTCCTCGTACTTTTGGTACAACG--CGTCAAATTCGGCACCGTAACAGTCGG 23291
||||||| || || |||| || || | ||||| || |||| || || |
Sbjct 4214901 ---CCTTCTTGTTCATA--TTTGATATAAAGGTTTTCAAAATCTTCACCCCAAACATCTG 4214847
Query 23292 CCAGGCCGGGCGATTGCATCGGACACATGAGACTCCACATTGAGTCATT---TTCAACGC 23348
||||| || ||| |||||||| || ||| || ||||| |||||| |
Sbjct 4214846 GAAGGCCAGGACATTTATGTGGACACATTAGTGACCA-AT--CTTCATTGGCTTCAACAC 4214790
Query 23349 GTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCT 23408
|| ||||||||||||| || ||||| | || | ||||| ||||| || || ||||
Sbjct 4214789 GTTTCATAAAAAGATCAGGAATCCACAATGCAAAAAACAGATCGCGCGCCCGATGTTCCT 4214730
Query 23409 CTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGA 23468
| || || || || ||||| | |||||||| || || || || | ||||| ||||| |
Sbjct 4214729 CCTTTCCAGTATTTTTTTTAAGGTCCAAAAATTCGAAGACATCTGAGTGCCAAGGCTCTA 4214670
Query 23469 GGTAAACGGCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACGGGCCGTGT 23528
||||| ||||| || || ||||| ||| |||||||||||||| ||||| ||| |
Sbjct 4214669 AGTAAATAGCAAATGCTCCAGGTCTTTTACCACCGCCCTGATCGACATAACGTGCCACAT 4214610
Query 23529 TGTTGTACACTCTTAGCATCGGCACGAGACCGTTGGACGCGCCGCCTACGCCCGCCACAC 23588
| || | ||||||| ||| || || | || || || | ||| | || | || |
Sbjct 4214609 TATTAAAAACTCTTAACATTGGTACTAATCCATTTGAAGTACCG--TTCGTTCCACAAAT 4214552
Query 23589 T--CGAACCTTTTGCTCGAACGTTGTGAACGTGGAAACCTATGCCTCCGCCCGATTTCGA 23646
| | ||||| ||||||| |||||| | | || ||||| || |||| || ||
Sbjct 4214551 TGATGTTCCTTTAGCTCGAATACAGTGAACATTCAGTCCAATGCCACCTGCCGACTTTGA 4214492
Query 23647 TATCATCGCGCATTGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTC---CTCTTTGGT 23703
||||| |||||||| | | | | | || || || || || | || | ||
Sbjct 4214491 AATCATTGCGCATTGCTCAACTGATTTAAAAATCCCTTCAATTGAATCAGACACTATAGT 4214432
Query 23704 CGCGACCAAGAAACACGAAGACATTTG----CGCTTTGGGCGTAGCGGCCGAGAACAGTG 23759
|| ||| || ||||||| ||| || ||| || || || | || || |
Sbjct 4214431 TAAGAGAAAG---CATGAAGACAATTGTGGACGGTTT----GTGGCTGCAGCAAAAAGAG 4214379
Query 23760 TCGGGCTGGCGTGCGTAAAGTATCCATTCGACATTAGATTGTACGTGTCGATGGCGGCAT 23819
| || || || ||||| | | | || | | |||||| || || | || | ||
Sbjct 4214378 TTGGTGATGCATGAGTAAAAAAACGCTCAGATAGCAAATTGTAGGTTTCCACTGCAGAAT 4214319
Query 23820 CAATGTCCTCTCCGTGTATACCGATGGCGACGCGCATCATCATGTATTGAGGTCTCTCGA 23879
|||| || || || |||||||| || || || ||||| | || | || ||||| ||
Sbjct 4214318 CAATATCTTCGCCATGTATACCTATAGCAACACGCATTAGCAAATGCTGTGGTCTTTCTG 4214259
Query 23880 CCGTGACGCCGTTAATTTTGAACAGATATGAACGTTGCATCGTTTTAAATCCAAAATAGT 23939
| | || || ||||| | || || || || | | || ||||||||||| ||||
Sbjct 4214258 CTATTTTTCCATTTATTTTTAGCAAGTAAGACCGCTCAAGTGTCTTAAATCCAAAGTAGT 4214199
Query 23940 CATAGTTAAAGTCACGATCGTGCACTATGGCCGAATTCAAACGGTACGCATT 23991
||| ||| |||||||| | | || || || ||||| || | || |||
Sbjct 4214198 TATATCCAAAATCACGATCATATATAATAGCAGAGTTCAAGCGATCCGAATT 4214147
Score = 87.8 bits (96), Expect = 2e-12
Identities = 142/202 (70%), Gaps = 2/202 (1%)
Strand=Plus/Plus
Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249
|| |||||||| ||||| || ||||| || ||||| || || ||| | || || || ||
Sbjct 180066 AAAATGCAAATCTTCGTKAAAACTCTCACCGGCAAGACCATTACCTTGGAGGTCGAGCCC 180125
Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309
|| |||| |||| | ||||| | || |||||| ||||| | || || ||
Sbjct 180126 TCTGACACCATCGAGAATGTCAAGGCCAAGATCCAGGACAAAGAAGGGATCCCACCAGAT 180185
Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTA 31368
||||||||||| || || || ||||| ||| |||| || | | | ||| | ||| ||
Sbjct 180186 CAGCAGCGTCTGATCTTTGCCGGCAAGCAGCTGGAGGA-TGGACGCACTCTATCCGACTA 180244
Query 31369 TAACATTCAAAAAGAATCGACT 31390
|||||||| || || || |||
Sbjct 180245 CAACATTCAGAAGGAGTCCACT 180266
>seq4
Length=22154029
Score = 260 bits (288), Expect = 1e-64
Identities = 559/829 (67%), Gaps = 10/829 (1%)
Strand=Plus/Minus
Query 57589 AGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTGTCTAAGGATCTGAGCGATT 57648
|||| || || || || ||||| || || || || || || || |||||| || || |
Sbjct 3241149 AGGCCGAGGCCTCATTCTGGACTGTGGAGGAGGTGGATCTCTCCAAGGATTTGGCGGACT 3241090
Query 57649 GGGATTCCCTCAAAGAATCTGAGAGAAATTTTATTAAACACGTGTTGGCGTTTTTCGCCG 57708
||| | | || ||| | | ||||| || ||| | || || || ||||
Sbjct 3241089 GGGCACGTTTAACTGATAACGAGCGTCACTTTATCTCGCATGTGCTCGCCTTCTTTGCCG 3241030
Query 57709 CATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGATTTTCACAAGAAGTGCAAGTGA 57768
| |||||||| |||||||| |||||| ||||||| | || || || |||||| | |
Sbjct 3241029 CCTCCGATGGCATTGTTAATGAGAATCTGGTCGAGCGCTTCAGCCAGGAGGTGCAAATAA 3240970
Query 57769 CGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCATTGAAAACGTGCATTCAGAAATGT 57828
| || || | || || || || |||||| | ||||| || || ||||| || || ||||
Sbjct 3240969 CCGAAGCTCGTTGTTTCTATGGCTTTCAAATTGCCATGGAGAATGTGCACTCGGAGATGT 3240910
Query 57829 ATTCGCTACTCATCGATACGTACGTGAAGGACAACGACGAGAAACGTAGA--CTGTTCAA 57886
| | || |||||||| || | | ||| | || ||| | | ||||||||
Sbjct 3240909 ACAGCGTGCTGATCGATACATATATTAGGGAT--CCACAGCAAAGGGATTATCTGTTCAA 3240852
Query 57887 CGCGATCGAAACAATGCCCGCGATC--GCCAAGAAGGCAGAGTGGTCAATCAAATGGATA 57944
|| || |||||||||||||| || || || |||| || ||| | || |||||
Sbjct 3240851 TGCCATTGAAACAATGCCCGCTGTCAAGCGAA--AGGCTGATTGGGCGCTCTCTTGGATT 3240794
Query 57945 AAAAGCGCCACGGCCACGTTCGCCGAGAGGCTAATCGCGTTCGCCGCCGTCGAAGGTATA 58004
| |||| | || | |||||| | |||||||| || ||||| || || ||
Sbjct 3240793 TCATCGAAGGCGGCGAACTTTGGCGAGAGAATTATCGCGTTTGCTGCCGTGGAGGGAATC 3240734
Query 58005 TTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGATGAAGAAACGCGGCCTGATGCCCGGC 58064
||||| || |||||||| | || |||||| ||||||| || || |||||||| ||
Sbjct 3240733 TTCTTCAGCGGAAGCTTTGCCTCGATCTTTTGGCTGAAGAAGCGTGGTCTGATGCCAGGT 3240674
Query 58065 CTGACGTTTAGCAACGAGTTGATATCGCGCGACGAGGGTCTCCATACTGATTTTGCGTGC 58124
|||||||| ||| |||||||| || ||||||||||| | ||| ||| ||||| |
Sbjct 3240673 CTGACGTTCTCCAATGAGTTGATCTCACGCGACGAGGGCTTGCATTGTGACTTTGCTGTC 3240614
Query 58125 CTAATGTACTCTCACATTGTCAATAAACCGACGCGGGATCGCATCTTGGACATTATCACC 58184
| |||| | || | || | || | ||||| || ||| | || |||||| |
Sbjct 3240613 ATGATGTTCCGGCATTTGGTGCAACGGCCCAGCCGGGAGCGTATCATCGAGATTATCTCG 3240554
Query 58185 GAGGCGGTCGCGATCGAAAATGAGTTTGTCACCGAAGCCCTACCGGTGGCCATGCTCGGT 58244
|| || || | || || | |||||| |||| || || || || || || | ||
Sbjct 3240553 GATGCTGTTACCATTGAGCAAGAGTTTCTCACAGATGCTCTGCCCGTCAATTTGATTGGC 3240494
Query 58245 ATGAACAATGATTTGATGTCAAAGTACATTGAGTTTGTTGCCGACAGACTTTTGCTCGAA 58304
||||| || |||||||| | || ||||| ||||| || || | || || | |||
Sbjct 3240493 ATGAATTGTGCATTGATGTCCCAATATATTGAATTTGTGGCGGATCGTCTGCTGGTGGAA 3240434
Query 58305 CTGATTGGAGAGCGTCAT-TACAACACGAAAAATCCGTTTGATTTTATGAATCTGATCTC 58363
|| || | || || ||||| ||||| ||||| || || ||| | |||||||
Sbjct 3240433 CTCGGTGTTG-GCAAAATCTACAATACGAAGAATCCATTCACCTTCATGGAGATGATCTC 3240375
Query 58364 GCTCGAGGGCAAGACAAACTTTTTCGaaaaaaaaGTTAGCGAATATCAA 58412
||| || ||||| || ||||||||||| || |||||| | |||||||||
Sbjct 3240374 GCTGGATGGCAAAACTAACTTTTTCGAGAAGAAAGTTGGAGAATATCAA 3240326
>seq3
Length=21835025
Score = 113 bits (124), Expect = 4e-20
Identities = 152/212 (72%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
|||||||| ||||| ||||| ||||| ||||| || ||||| | || || || || |||
Sbjct 1955260 ATGCAAATCTTCGTGAAGACCCTGACTGGCAAGACCATCACTCTGGAGGTGGAGCCATCC 1955319
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
|| | | || | || || | || ||||||||||||| | || || || |||
Sbjct 1955320 GATACCATTGAGAACGTGAAGGCTAAGATTCAGGACAAGGAAGGCATTCCCCCAGATCAG 1955379
Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372
|||||||| || ||||| ||||| || ||||||| | || || |||||| ||
Sbjct 1955380 CAGCGTCTGATCTTCGCCGGCAAGCAACTGGAAGATGGTCGCACCTTGTCCGATTACAAT 1955439
Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404
||||| || || || ||||||||| |||| ||
Sbjct 1955440 ATTCAGAAGGAGTCTACTCTTCATTTGGTTCT 1955471
Score = 98.7 bits (108), Expect = 9e-16
Identities = 161/232 (69%), Gaps = 0/232 (0%)
Strand=Plus/Plus
Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249
|| ||||| || ||||| || ||| |||| || || || |||||| | || ||||| ||
Sbjct 1954855 AAAATGCAGATCTTCGTTAAAACTTTGACGGGAAAGACCATCACCCTGGAGGTTGAGCCT 1954914
Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309
||||| | | || | ||||| | || || ||||||||| | || || ||
Sbjct 1954915 TCCGATACCATTGAGAACGTCAAGGCCAAGATTCAAGATAAGGAAGGCATTCCCCCAGAT 1954974
Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTAT 31369
||||||||||| || ||||| ||||| || ||||||| | ||| || || ||
Sbjct 1954975 CAGCAGCGTCTGATCTTCGCCGGCAAGCAACTGGAAGATGGTCGCACTTTGTCTGACTAC 1955034
Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421
|| || || || || ||||| || |||||||| || | ||| | || ||||
Sbjct 1955035 AATATCCAGAAGGAGTCGACCCTCCATCTGGTCCTCCGTCTGCGTGGTGGTA 1955086
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 445721528039760
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