Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20navojoa_20[refseq_20GCF_5F001654015.1_202016-05-09] 8,053 sequences; 115,885,644 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq2 464 6e-126 seq4 260 1e-64 seq3 113 4e-20 >seq2 Length=4222574 Score = 464 bits (514), Expect = 6e-126 Identities = 1256/1912 (66%), Gaps = 67/1912 (4%) Strand=Plus/Minus Query 22112 ACTGTAAACTGTATGGCGTTTGCGGCCGGTTTGGTGCGAAGATAATACATGCCCGTCTTC 22171 || || || ||||| || || || || ||||| |||||||||||||||||||| ||||| Sbjct 4216023 ACAGTGAATTGTATAGCATTAGCCGCTGGTTTTGTGCGAAGATAATACATGCCGGTCTTA 4215964 Query 22172 AGACCCATCTTCCACGCGTAAAAATGTATCGACGTCAATTTTCCATAACTCGGCAAGTCC 22231 ||||| ||||||| |||||||| || || || |||||||||||| | || | Sbjct 4215963 AGACCTGCTTTCCACGAATAAAAATGGATTGATGTTAATTTTCCATAATTAGGTTCAGCT 4215904 Query 22232 ATGTACACATTGAACGACTGACTCTGATCGATAAACGCTCCTCGATCGGCGGCCATATTT 22291 | || | |||||| |||||||| ||||| ||||| ||||||| || || ||||| ||| Sbjct 4215903 ACGTGAATATTGAAAGACTGACTTTGATCAATAAAGGCTCCTCTGTCAGCCGCCATTTTT 4215844 Query 22292 ATCAATGTACGCATCGACATTTCCCATACGGTCTTGTACAGTTGCCTGATCTCTAACGGT 22351 || || || || || ||||| || || || |||| | | || || ||| Sbjct 4215843 ATAGTTGATTTAATTGAAATCTCCCACACTGTTTTATACAAATCACGAATTTCCTTCGGA 4215784 Query 22352 ATCGATTCGATCCTCTGGACGGACCCGTTATTGTGTATGATCAAATTTTTAATCGTATCG 22411 || ||||| || | || | || || ||| ||| || |||||| ||| || Sbjct 4215783 ATTGATTCAATATTTTGTATTGAACCACGATTTGATATTATTTGATTTTTCATCTCGTCA 4215724 Query 22412 TTCCACAAACCGATGGCGGTCAAATCTTTGACCAGATGACGGTTCACCACTTGAAACTCG 22471 | ||||||| | | |||| ||||| || | ||| |||| || |||||||| ||| Sbjct 4215723 TCCCACAAATCAAGTTCGGTTAAATCACGGAGTAAGTGATGGTTTACTACTTGAAATTCG 4215664 Query 22472 CCGGACAAGACGCGGCGTTGGTAAATGTTGGATGTGAACGGTTCGAAAGATTCATTGTTT 22531 |||||||| || || | | ||||||||| || || | || ||||| || |||||||| Sbjct 4215663 CCGGACAATACTCGTCTTGTGTAAATGTTTGAAGTATAAGGCTCGAACGACTCATTGTTG 4215604 Query 22532 CCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCAACAGTAGCGAGTTTCTCAAG 22591 |||| ||| || || || || || || ||||| || || | |||| || ||||| | Sbjct 4215603 CCCATTATTTGTGCAGTAGATGCTGTAGGCATGGGAGCAACGAGTAAAGAATTTCTGACA 4215544 Query 22592 CCGTGCT------TTGAAATTTTACTCTTGAGCATCGACCAGTCCCACAGATCGGACGGC 22645 || || | | || ||||| || |||| ||||||||| ||||| | ||| Sbjct 4215543 CCATGTTGCGCTATCGATTTTTTA----AGAACATC--CCAGTCCCAAAGATCTGTTGGC 4215490 Query 22646 GTCACATTGTCCCACATATCGTATTGCAACACGCCGCGACTCGCCGGGCTGCCTTCGTAC 22705 | || | ||||||||| || ||||| | || || | || || || | || Sbjct 4215489 G---ATTTATTCCACATATCATACTGCAAAATTCCTTTGCTTACTGGACTTCCAACATAA 4215433 Query 22706 GTTTCGTACGGACCATATATCGCGGCAAGTTCGCAGCTCGCCTCCAACGCGCCGTAATAT 22765 || || || || |||| | | || | ||| ||||| || |||| || || || ||| Sbjct 4215432 GTCTCATATGGTCCATCTCTTTGAGCTAATTCACAGCTGGCTTCCAGAGCTCCATAGTAT 4215373 Query 22766 ATAGTCTCGAAGATTTTCTTGTTCAATTCGGCGGCGGCGACGCTTTCGTACGGCATA-CG 22824 ||||| ||||| || | || || || || | |||||||| | ||| || Sbjct 4215372 ATAGTTTCGAAAATCTGCTGATTTAAAAGAAATGCATCATGACTTTCGTA-AGAATACCG 4215314 Query 22825 CATCATCACGAACGCGTCCGCCATACCCTGAACGCCTATACCGATCGGTCGGTTTTTCAG 22884 ||| | | ||||||||||| | || || || || || || || || |||| | Sbjct 4215313 CATTAATATTAACGCGTCCGCAAACCCTTGGACTCCAATTCCAATAGGACGGTGGCGTAA 4215254 Query 22885 ATTCGACACTTTTGCCTCGGGCAAAGGATACCAATTCGAATCGATTGTTCTGTTCAAGTT 22944 ||| || ||| || || |||||||| || |||| ||| ||| || |||| ||||| Sbjct 4215253 ATTTGATTTTTTAGCTTCTGGCAAAGGGTAGTAATTTATATCAATTATTTTGTTTAAGTT 4215194 Query 22945 TCTGGTCACAATTTTCGTTATNNNNNNNNNNNNNTCAAAGTCGTAAACGCCCGATTGTAC 23004 | | || |||||||| |||| | |||||| || ||||| | | Sbjct 4215193 TTTCGTAACAATTTTAGTTACTTCTTTAAGCTTTTTAAAGTCATA------CGATTTTTC 4215140 Query 23005 A------ACAAACTTGTTGACGGCGATCGAGGCAAGATTGCATACGGCCACCTCGTCTTT 23058 | |||||| | || | || || || || | ||| || || || | || ||| Sbjct 4215139 ATGCGTCACAAACATATTAAGTGCAATTGACGCCAAATTACACACAGCTATTTCATCTGG 4215080 Query 23059 GGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTGCCCAAATTGCT 23118 | | ||||| || ||||| || || ||||| || || ||||| || || | ||| Sbjct 4215079 TGCTGAATACTCAACTATTTCTGTGCACAGATTACTGCATTTTATAGTTCCAACATTTTG 4215020 Query 23119 CTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGAC 23178 ||||||||||||| || ||||||||||| | | |||||| || || |||||||| || Sbjct 4215019 TTGGTTGCTTTTTCTGTTACACGAATCCTTAAATAACATGTAGGGTGTACCCGTCTCTAC 4214960 Query 23179 CTGCGACTCGATGATCGCTCGCCACATAGTCTGAGCGT---GAACACG--TCGCACGTAC 23233 || || ||||| || || ||| | || ||||| | ||| || |||| ||| Sbjct 4214959 TTGAGATTCGATAATGGCAAACCAAAGAGATTGAGCCTTAATAACTCGATTCGCTCGT-- 4214902 Query 23234 CTGCCTTCTTCCTCGTACTTTTGGTACAACG--CGTCAAATTCGGCACCGTAACAGTCGG 23291 ||||||| || || |||| || || | ||||| || |||| || || | Sbjct 4214901 ---CCTTCTTGTTCATA--TTTGATATAAAGGTTTTCAAAATCTTCACCCCAAACATCTG 4214847 Query 23292 CCAGGCCGGGCGATTGCATCGGACACATGAGACTCCACATTGAGTCATT---TTCAACGC 23348 ||||| || ||| |||||||| || ||| || ||||| |||||| | Sbjct 4214846 GAAGGCCAGGACATTTATGTGGACACATTAGTGACCA-AT--CTTCATTGGCTTCAACAC 4214790 Query 23349 GTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCT 23408 || ||||||||||||| || ||||| | || | ||||| ||||| || || |||| Sbjct 4214789 GTTTCATAAAAAGATCAGGAATCCACAATGCAAAAAACAGATCGCGCGCCCGATGTTCCT 4214730 Query 23409 CTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGA 23468 | || || || || ||||| | |||||||| || || || || | ||||| ||||| | Sbjct 4214729 CCTTTCCAGTATTTTTTTTAAGGTCCAAAAATTCGAAGACATCTGAGTGCCAAGGCTCTA 4214670 Query 23469 GGTAAACGGCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACGGGCCGTGT 23528 ||||| ||||| || || ||||| ||| |||||||||||||| ||||| ||| | Sbjct 4214669 AGTAAATAGCAAATGCTCCAGGTCTTTTACCACCGCCCTGATCGACATAACGTGCCACAT 4214610 Query 23529 TGTTGTACACTCTTAGCATCGGCACGAGACCGTTGGACGCGCCGCCTACGCCCGCCACAC 23588 | || | ||||||| ||| || || | || || || | ||| | || | || | Sbjct 4214609 TATTAAAAACTCTTAACATTGGTACTAATCCATTTGAAGTACCG--TTCGTTCCACAAAT 4214552 Query 23589 T--CGAACCTTTTGCTCGAACGTTGTGAACGTGGAAACCTATGCCTCCGCCCGATTTCGA 23646 | | ||||| ||||||| |||||| | | || ||||| || |||| || || Sbjct 4214551 TGATGTTCCTTTAGCTCGAATACAGTGAACATTCAGTCCAATGCCACCTGCCGACTTTGA 4214492 Query 23647 TATCATCGCGCATTGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTC---CTCTTTGGT 23703 ||||| |||||||| | | | | | || || || || || | || | || Sbjct 4214491 AATCATTGCGCATTGCTCAACTGATTTAAAAATCCCTTCAATTGAATCAGACACTATAGT 4214432 Query 23704 CGCGACCAAGAAACACGAAGACATTTG----CGCTTTGGGCGTAGCGGCCGAGAACAGTG 23759 || ||| || ||||||| ||| || ||| || || || | || || | Sbjct 4214431 TAAGAGAAAG---CATGAAGACAATTGTGGACGGTTT----GTGGCTGCAGCAAAAAGAG 4214379 Query 23760 TCGGGCTGGCGTGCGTAAAGTATCCATTCGACATTAGATTGTACGTGTCGATGGCGGCAT 23819 | || || || ||||| | | | || | | |||||| || || | || | || Sbjct 4214378 TTGGTGATGCATGAGTAAAAAAACGCTCAGATAGCAAATTGTAGGTTTCCACTGCAGAAT 4214319 Query 23820 CAATGTCCTCTCCGTGTATACCGATGGCGACGCGCATCATCATGTATTGAGGTCTCTCGA 23879 |||| || || || |||||||| || || || ||||| | || | || ||||| || Sbjct 4214318 CAATATCTTCGCCATGTATACCTATAGCAACACGCATTAGCAAATGCTGTGGTCTTTCTG 4214259 Query 23880 CCGTGACGCCGTTAATTTTGAACAGATATGAACGTTGCATCGTTTTAAATCCAAAATAGT 23939 | | || || ||||| | || || || || | | || ||||||||||| |||| Sbjct 4214258 CTATTTTTCCATTTATTTTTAGCAAGTAAGACCGCTCAAGTGTCTTAAATCCAAAGTAGT 4214199 Query 23940 CATAGTTAAAGTCACGATCGTGCACTATGGCCGAATTCAAACGGTACGCATT 23991 ||| ||| |||||||| | | || || || ||||| || | || ||| Sbjct 4214198 TATATCCAAAATCACGATCATATATAATAGCAGAGTTCAAGCGATCCGAATT 4214147 Score = 87.8 bits (96), Expect = 2e-12 Identities = 142/202 (70%), Gaps = 2/202 (1%) Strand=Plus/Plus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || |||||||| ||||| || ||||| || ||||| || || ||| | || || || || Sbjct 180066 AAAATGCAAATCTTCGTKAAAACTCTCACCGGCAAGACCATTACCTTGGAGGTCGAGCCC 180125 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 || |||| |||| | ||||| | || |||||| ||||| | || || || Sbjct 180126 TCTGACACCATCGAGAATGTCAAGGCCAAGATCCAGGACAAAGAAGGGATCCCACCAGAT 180185 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTA 31368 ||||||||||| || || || ||||| ||| |||| || | | | ||| | ||| || Sbjct 180186 CAGCAGCGTCTGATCTTTGCCGGCAAGCAGCTGGAGGA-TGGACGCACTCTATCCGACTA 180244 Query 31369 TAACATTCAAAAAGAATCGACT 31390 |||||||| || || || ||| Sbjct 180245 CAACATTCAGAAGGAGTCCACT 180266 >seq4 Length=22154029 Score = 260 bits (288), Expect = 1e-64 Identities = 559/829 (67%), Gaps = 10/829 (1%) Strand=Plus/Minus Query 57589 AGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTGTCTAAGGATCTGAGCGATT 57648 |||| || || || || ||||| || || || || || || || |||||| || || | Sbjct 3241149 AGGCCGAGGCCTCATTCTGGACTGTGGAGGAGGTGGATCTCTCCAAGGATTTGGCGGACT 3241090 Query 57649 GGGATTCCCTCAAAGAATCTGAGAGAAATTTTATTAAACACGTGTTGGCGTTTTTCGCCG 57708 ||| | | || ||| | | ||||| || ||| | || || || |||| Sbjct 3241089 GGGCACGTTTAACTGATAACGAGCGTCACTTTATCTCGCATGTGCTCGCCTTCTTTGCCG 3241030 Query 57709 CATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGATTTTCACAAGAAGTGCAAGTGA 57768 | |||||||| |||||||| |||||| ||||||| | || || || |||||| | | Sbjct 3241029 CCTCCGATGGCATTGTTAATGAGAATCTGGTCGAGCGCTTCAGCCAGGAGGTGCAAATAA 3240970 Query 57769 CGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCATTGAAAACGTGCATTCAGAAATGT 57828 | || || | || || || || |||||| | ||||| || || ||||| || || |||| Sbjct 3240969 CCGAAGCTCGTTGTTTCTATGGCTTTCAAATTGCCATGGAGAATGTGCACTCGGAGATGT 3240910 Query 57829 ATTCGCTACTCATCGATACGTACGTGAAGGACAACGACGAGAAACGTAGA--CTGTTCAA 57886 | | || |||||||| || | | ||| | || ||| | | |||||||| Sbjct 3240909 ACAGCGTGCTGATCGATACATATATTAGGGAT--CCACAGCAAAGGGATTATCTGTTCAA 3240852 Query 57887 CGCGATCGAAACAATGCCCGCGATC--GCCAAGAAGGCAGAGTGGTCAATCAAATGGATA 57944 || || |||||||||||||| || || || |||| || ||| | || ||||| Sbjct 3240851 TGCCATTGAAACAATGCCCGCTGTCAAGCGAA--AGGCTGATTGGGCGCTCTCTTGGATT 3240794 Query 57945 AAAAGCGCCACGGCCACGTTCGCCGAGAGGCTAATCGCGTTCGCCGCCGTCGAAGGTATA 58004 | |||| | || | |||||| | |||||||| || ||||| || || || Sbjct 3240793 TCATCGAAGGCGGCGAACTTTGGCGAGAGAATTATCGCGTTTGCTGCCGTGGAGGGAATC 3240734 Query 58005 TTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGATGAAGAAACGCGGCCTGATGCCCGGC 58064 ||||| || |||||||| | || |||||| ||||||| || || |||||||| || Sbjct 3240733 TTCTTCAGCGGAAGCTTTGCCTCGATCTTTTGGCTGAAGAAGCGTGGTCTGATGCCAGGT 3240674 Query 58065 CTGACGTTTAGCAACGAGTTGATATCGCGCGACGAGGGTCTCCATACTGATTTTGCGTGC 58124 |||||||| ||| |||||||| || ||||||||||| | ||| ||| ||||| | Sbjct 3240673 CTGACGTTCTCCAATGAGTTGATCTCACGCGACGAGGGCTTGCATTGTGACTTTGCTGTC 3240614 Query 58125 CTAATGTACTCTCACATTGTCAATAAACCGACGCGGGATCGCATCTTGGACATTATCACC 58184 | |||| | || | || | || | ||||| || ||| | || |||||| | Sbjct 3240613 ATGATGTTCCGGCATTTGGTGCAACGGCCCAGCCGGGAGCGTATCATCGAGATTATCTCG 3240554 Query 58185 GAGGCGGTCGCGATCGAAAATGAGTTTGTCACCGAAGCCCTACCGGTGGCCATGCTCGGT 58244 || || || | || || | |||||| |||| || || || || || || | || Sbjct 3240553 GATGCTGTTACCATTGAGCAAGAGTTTCTCACAGATGCTCTGCCCGTCAATTTGATTGGC 3240494 Query 58245 ATGAACAATGATTTGATGTCAAAGTACATTGAGTTTGTTGCCGACAGACTTTTGCTCGAA 58304 ||||| || |||||||| | || ||||| ||||| || || | || || | ||| Sbjct 3240493 ATGAATTGTGCATTGATGTCCCAATATATTGAATTTGTGGCGGATCGTCTGCTGGTGGAA 3240434 Query 58305 CTGATTGGAGAGCGTCAT-TACAACACGAAAAATCCGTTTGATTTTATGAATCTGATCTC 58363 || || | || || ||||| ||||| ||||| || || ||| | ||||||| Sbjct 3240433 CTCGGTGTTG-GCAAAATCTACAATACGAAGAATCCATTCACCTTCATGGAGATGATCTC 3240375 Query 58364 GCTCGAGGGCAAGACAAACTTTTTCGaaaaaaaaGTTAGCGAATATCAA 58412 ||| || ||||| || ||||||||||| || |||||| | ||||||||| Sbjct 3240374 GCTGGATGGCAAAACTAACTTTTTCGAGAAGAAAGTTGGAGAATATCAA 3240326 >seq3 Length=21835025 Score = 113 bits (124), Expect = 4e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| ||||| ||||| ||||| ||||| || ||||| | || || || || ||| Sbjct 1955260 ATGCAAATCTTCGTGAAGACCCTGACTGGCAAGACCATCACTCTGGAGGTGGAGCCATCC 1955319 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | || | || || | || ||||||||||||| | || || || ||| Sbjct 1955320 GATACCATTGAGAACGTGAAGGCTAAGATTCAGGACAAGGAAGGCATTCCCCCAGATCAG 1955379 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 |||||||| || ||||| ||||| || ||||||| | || || |||||| || Sbjct 1955380 CAGCGTCTGATCTTCGCCGGCAAGCAACTGGAAGATGGTCGCACCTTGTCCGATTACAAT 1955439 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||||| || || || ||||||||| |||| || Sbjct 1955440 ATTCAGAAGGAGTCTACTCTTCATTTGGTTCT 1955471 Score = 98.7 bits (108), Expect = 9e-16 Identities = 161/232 (69%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| || ||||| || ||| |||| || || || |||||| | || ||||| || Sbjct 1954855 AAAATGCAGATCTTCGTTAAAACTTTGACGGGAAAGACCATCACCCTGGAGGTTGAGCCT 1954914 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 ||||| | | || | ||||| | || || ||||||||| | || || || Sbjct 1954915 TCCGATACCATTGAGAACGTCAAGGCCAAGATTCAAGATAAGGAAGGCATTCCCCCAGAT 1954974 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTAT 31369 ||||||||||| || ||||| ||||| || ||||||| | ||| || || || Sbjct 1954975 CAGCAGCGTCTGATCTTCGCCGGCAAGCAACTGGAAGATGGTCGCACTTTGTCTGACTAC 1955034 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 || || || || || ||||| || |||||||| || | ||| | || |||| Sbjct 1955035 AATATCCAGAAGGAGTCGACCCTCCATCTGGTCCTCCGTCTGCGTGGTGGTA 1955086 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445721528039760