Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20navojoa_20[refseq_20GCF_5F001654015.1_202016-05-09] 8,053 sequences; 115,885,644 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq4 150 4e-31 seq2 132 1e-25 >seq4 Length=22154029 Score = 150 bits (166), Expect = 4e-31 Identities = 303/447 (68%), Gaps = 7/447 (2%) Strand=Plus/Minus Query 101914 AATTGTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTT 101973 |||| | || |||||||| || || ||||||||||| || || || || || || || Sbjct 3240764 AATTATCGCGTTTGCTGCCGTGGAGGGAATCTTCTTCAGCGGAAGCTTTGCCTCGATCTT 3240705 Query 101974 CTGGATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAG 102033 ||| | ||||| | ||| | |||| ||||| || | |||||||||||| || || | Sbjct 3240704 TTGGCTGAAGAAGCGTGGTCTGATGCCAGGTCTGACGTTCTCCAATGAGTTGATCTCACG 3240645 Query 102034 GGACGAAGGTCTTCATCGCGACTTTGCATGCATGCTGTTGAAAAAGGGTTTTGTTGATAC 102093 ||||| || | ||| | |||||||| |||| |||| || |||| || || Sbjct 3240644 CGACGAGGGCTTGCATTGTGACTTTGCTGTCATGATGTTCC----GGCATTTGGTGCAAC 3240589 Query 102094 --CCCATCAAGAGAAAGGATTCTTGAAATTGTCACTGAAGCCGTCCGAATTGAACAAGAA 102151 |||| | | || | || | || ||| || | || || || ||||| ||||| Sbjct 3240588 GGCCCAGCCGG-GAGCGTATCATCGAGATTATCTCGGATGCTGTTACCATTGAGCAAGAG 3240530 Query 102152 TTTCTCACAGTTTCCCTGCCTGTTAAATTAGTGGGAATGAACTGCAAGTTGATGAGCCAG 102211 |||||||||| | | ||||| || || || | || ||||| || |||||| ||| Sbjct 3240529 TTTCTCACAGATGCTCTGCCCGTCAATTTGATTGGCATGAATTGTGCATTGATGTCCCAA 3240470 Query 102212 TACATTGAATTTGTGGCAGATAAACTATTGGTTGAAATGGGACTAGAAAAGCACTATAAT 102271 || |||||||||||||| ||| || |||| ||| | || | | || ||| ||| Sbjct 3240469 TATATTGAATTTGTGGCGGATCGTCTGCTGGTGGAACTCGGTGTTGGCAAAATCTACAAT 3240410 Query 102272 GTTACCAACCCCTTCCCATTCATGGACAATATTTCCCTCGAGAATAAGACCAACTTTTTT 102331 | || || ||| | |||||||| | || || || || || || |||||||| Sbjct 3240409 ACGAAGAATCCATTCACCTTCATGGAGATGATCTCGCTGGATGGCAAAACTAACTTTTTC 3240350 Query 102332 GAAAAGAGAGTCGCCGAGTATCAACGT 102358 || |||| ||| | || ||||||||| Sbjct 3240349 GAGAAGAAAGTTGGAGAATATCAACGT 3240323 >seq2 Length=4222574 Score = 132 bits (146), Expect = 1e-25 Identities = 322/481 (67%), Gaps = 14/481 (3%) Strand=Plus/Minus Query 35319 AGAAGAAGATACACATCTGGAACGCTAATGGGTCGCGGGAATTTTTGGACAGTAGAGGGT 35378 ||||||| || ||||| ||| | | |||| | | || || ||| | |||| | || Sbjct 2651963 AGAAGAATATCCACATATGGGATGGTAATAGCACCCGCGAGTTTCTCGACAAATGTGGCC 2651904 Query 35379 TATACG-ATAGAGCAGAGGGAGATTTGGGACCCGTATACGGATTCCAATGGCGTCATTTT 35437 | ||| || | | | ||| ||| |||| || || || || || || |||||||| ||| Sbjct 2651903 -ACACGGATCGCGAGGTGGGTGATCTGGGTCCAGTCTATGGCTTTCAGTGGCGTCACTTT 2651845 Query 35438 GGTGCTGAATATGATACCTGTTCTTCCGATTATACTGGAAAGGGTATTGATCAATTGGCC 35497 || ||| |||||| || || | ||| || || || ||||||||||||| ||| | Sbjct 2651844 GGCGCTAAATATGGTAAATGCACCGACGACTACACAGGCCAGGGTATTGATCAGTTG--C 2651787 Query 35498 AATA--TACTAAAGACCCTGAGAGAAAATCCAGATGATAGAAGGATGATTATGACGGCAT 35555 || | | | | || | | | ||||| | ||| | | || || ||| | || | Sbjct 2651786 AACAGGTCATCGATACTATACGCAACAATCCGGCGGATCGTCGCATCATAATGTCCGCCT 2651727 Query 35556 GGAATCCTATGGATCTTCACCTTATGGCTCTTCCTCCATGCCACATGACTGCTC-AATTT 35614 |||||||| |||| | | || ||||| | || ||||||||| || ||| || |||| Sbjct 2651726 GGAATCCTTTGGACATACCCCAAATGGCATTACCGCCATGCCAC-TGCCTGGTCCAATTC 2651668 Query 35615 TATGTGGCTAA------TGGAGAATTGTCGTGCCAGTTGTATCAGCGAAGCGGAGATGTC 35668 ||||| | | ||| |||||||| ||||| |||||||||| |||| || | Sbjct 2651667 TATGTATCGCAGTCGCGTGGTGAATTGTCCTGCCAACTGTATCAGCGCAGCGCCGACATG 2651608 Query 35669 GGGTTGGGCGTGCCCTTCAATATTGCATCATACTCTCTTCTGACTCATCTGATGGCCAGT 35728 || |||| || ||||||||||| || || || | | |||| | |||| || | Sbjct 2651607 GGTCTGGGAGTACCCTTCAATATCGCCTCGTATGCCTTGTTGACCTACATGATCGCTCAT 2651548 Query 35729 ATGGTGGGTCTAAAACCGGGAGAGTTTATCCTCACTCTTGGTGACGCACACATTTATAAT 35788 || |||| | || || || || || ||| || || ||||| || ||| | |||||| Sbjct 2651547 GTGACGGGTTTGAAGCCCGGCGATTTCGTCCATACGCTGGGTGATGCTCACGTCTATAAT 2651488 Query 35789 A 35789 | Sbjct 2651487 A 2651487 Score = 93.3 bits (102), Expect = 8e-14 Identities = 187/275 (68%), Gaps = 8/275 (3%) Strand=Plus/Minus Query 35522 AATCCAGATGATAGAAGGATGATTATGACGGCATGGAATCCTATGGATCTTCACCTTATG 35581 ||||| | ||| | | || || ||| | || ||||||||| |||| | | || ||| Sbjct 2650563 AATCCGGCGGATCGTCGCATCATAATGTCCGCCTGGAATCCTTTGGACATACCCCAAATG 2650504 Query 35582 GCTCTTCCTCCATGCCACATGACTGCTC-AATTTTATGTGGCTAA------TGGAGAATT 35634 || | || ||||||||| || ||| || |||| ||||| | | ||| ||||| Sbjct 2650503 GCATTACCGCCATGCCAC-TGCCTGGTCCAATTCTATGTATCGCAGTCGCGTGGTGAATT 2650445 Query 35635 GTCGTGCCAGTTGTATCAGCGAAGCGGAGATGTCGGGTTGGGCGTGCCCTTCAATATTGC 35694 ||| ||||| |||||||||| |||| || | || |||| || ||||||||||| || Sbjct 2650444 GTCCTGCCAACTGTATCAGCGCAGCGCCGACATGGGTCTGGGAGTACCCTTCAATATCGC 2650385 Query 35695 ATCATACTCTCTTCTGACTCATCTGATGGCCAGTATGGTGGGTCTAAAACCGGGAGAGTT 35754 || || | | |||| | |||| || | || |||| | || || || || || Sbjct 2650384 CTCGTATGCCTTGTTGACCTACATGATCGCTCATGTGACGGGTTTGAAGCCCGGCGATTT 2650325 Query 35755 TATCCTCACTCTTGGTGACGCACACATTTATAATA 35789 ||| || || ||||| || ||| | ||||||| Sbjct 2650324 CGTCCATACGCTGGGTGATGCTCACGTCTATAATA 2650290 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989481895650615