Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20navojoa_20[refseq_20GCF_5F001654015.1_202016-05-09] 8,053 sequences; 115,885,644 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq2 558 5e-154 seq4 251 9e-62 >seq2 Length=4222574 Score = 558 bits (618), Expect = 5e-154 Identities = 1272/1897 (67%), Gaps = 24/1897 (1%) Strand=Plus/Minus Query 62046 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 62105 |||||||| || | | | || ||||| || || ||||| ||||| || || || ||| Sbjct 4216020 GTGAATTGTATAGCATTAGCCGCTGGTTTTGTGCGAAGATAATACATGCCGGTCTTAAGA 4215961 Query 62106 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATA 62165 || |||| |||||||| || |||| ||| |||| | || || |||| Sbjct 4215960 CCTGCTTTCCACGAATAAAAATGGATTGATGTTAATTTTCCATAATTAGGTTCAGCTACG 4215901 Query 62166 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATG 62225 || ||||| | ||| ||||||||||| || |||||||| ||||| || ||||||||||| Sbjct 4215900 TGAATATTGAAAGACTGACTTTGATCAATAAAGGCTCCTCTGTCAGCCGCCATTTTTATA 4215841 Query 62226 ATCGTCTTTTGTGCAATTTCCCAAATAGTTTTATA-AACTCGCTTAATATCTTCTGGAAG 62284 | | || || ||| ||||| | |||||||| || || | | | |||| | | Sbjct 4215840 GTTGATTTAATTGAAATCTCCCACACTGTTTTATACAAATCACGAATTTCCTTCGGAATT 4215781 Query 62285 GTTTG--TATTCTGAATGGATCCACCATCTACCATAATCCTATTCTTGATCTCATCATTC 62342 | || |||| || || || |||| || | || || ||| || ||||| |||| | Sbjct 4215780 GATTCAATATTTTGTATTGAACCACGATTTGATATTATTTGATTTTTCATCTCGTCATCC 4215721 Query 62343 CATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGGTTAACTACTTGGAATTCTCCA 62402 || || | ||||||||| | | || | || |||| |||||||| ||||| || Sbjct 4215720 CACAAATCAAGTTCGGTTAAATCACGGAGTAAGTGATGGTTTACTACTTGAAATTCGCCG 4215661 Query 62403 GACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACCGACTCATTATTTCCC 62462 |||||||||| | |||||||| || ||||| || || | ||||||||| || ||| Sbjct 4215660 GACAATACTCGTCTTGTGTAAATGTTTGAAGTATAAGGCTCGAACGACTCATTGTTGCCC 4215601 Query 62463 AAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCG 62522 | ||||| ||||| ||||| || ||||| || || || | |||| |||||| | ||| Sbjct 4215600 ATTATTTGTGCAGTAGATGCTGTAGGCATGGGAGCAACGAGTAAAGAATTTCTGACACC- 4215542 Query 62523 TATGTTCTGATTTT-ATCTTTTA-GATGTTCCCAATTCCAAAGATCCGACGGTACAACAN 62580 ||||| | | | || ||||| || ||||| | ||||||||| | || | Sbjct 4215541 -ATGTTGCGCTATCGATTTTTTAAGAACATCCCAGTCCCAAAGATCTGTTGGCGATTTAT 4215483 Query 62581 NNNNNNNNNNATATTGTAGAATACCGTTACTGGC-GTACGATCCTACATATGTATCATAT 62639 ||| || | ||| || || || | | || ||| ||||| || |||||| Sbjct 4215482 TCCACATATCATACTGCAAAATTCCTTTGCTTACTGGACT-TCCAACATAAGTCTCATAT 4215424 Query 62640 GGTCCTTCCTTCTCAGCTAGTTTACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCA 62699 ||||| || | | ||||| || ||| || || || | || || || || || ||||| Sbjct 4215423 GGTCCATCTCTTTGAGCTAATTCACAGCTGGCTTCCAGAGCTCCATAGTATATAGTTTCG 4215364 Query 62700 AAGATCTTCTTATTTAGATCTTGTGCTTCCGGGCTATCAAATGGATAATTTAAGAGAATA 62759 || |||| || ||||| | ||| || | || || | | ||| | | || Sbjct 4215363 AAAATCTGCTGATTTAAAAGAAATGCATCATGACTTTCGTAAGAATACCGCATTAATATT 4215304 Query 62760 AACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATT 62819 ||||||||||| || ||||| || ||||| || ||||| | || | ||| || || Sbjct 4215303 AACGCGTCCGCAAACCCTTGGACTCCAATTCCAATAGGACGGTGGCGTAAATTTGATTTT 4215244 Query 62820 TCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAATT 62879 | ||||||||| | ||| || ||||| ||||| || ||||| || | ||| | || Sbjct 4215243 TTAGCTTCTGGCAAAGGGTAGTAATTTATATCAATTATTTTGTTTAAGTTTTTCGTAACA 4215184 Query 62880 ACTTTGACCACATCCTTCAGTTTGAGAAAATCAAA---TCGCCCATCTATTACAAACATG 62936 | ||| || || || || || ||| ||| | | ||| | |||||||| Sbjct 4215183 ATTTTAGTTACTTCTTTAAGCTTTTTAAAGTCATACGATTTTTCATGCGTCACAAACATA 4215124 Query 62937 TTCAATGCAACAGATGCCAGATTACACACGGCTACCTCATTAGCATCCGCATATTGTATT 62996 || | ||||| || |||| ||||||||| |||| |||| | | | ||| | | | Sbjct 4215123 TTAAGTGCAATTGACGCCAAATTACACACAGCTATTTCATCTGGTGCTGAATACTCAACT 4215064 Query 62997 ATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTG 63056 || || ||||| |||||||| || || |||||||| | ||||||||| || || ||| || Sbjct 4215063 ATTTCTGTGCACAGATTACTGCATTTTATAGTTCCAACATTTTGTTGGTTGCTTTTTCTG 4215004 Query 63057 TTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATC 63116 ||||||| ||||||| | | ||| | || ||||| || || | |||||||| ||||| Sbjct 4215003 TTACACGAATCCTTAAATAACATGTAGGGTGTACCCGTCTCTACTTGAGATTCGATAATG 4214944 Query 63117 GCTTTCCAGACGACTCGAGCCTTTATTA-TAGATTTGTATCTCCTTTCTCTTTCGTATAG 63175 || ||| | | ||||||| || | | |||| | ||||| || ||| ||| Sbjct 4214943 GCAAACCAAAGAGATTGAGCCTTAATAACTCGATTCGCTCGTCCTT-CTTGTTCATATTT 4214885 Query 63176 AGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCTAGGACATTCATCCGG 63235 |||| | ||| || || || |||||||||| | | |||||||| || || Sbjct 4214884 GATATAAAGGTTTTCAAAATCTTCACCCCAAACATCTGGAAGGCCAGGACATTTATGTGG 4214825 Query 63236 ACACATCAACGACCACTCTCCGTCATC--CTTCA-CTCGTTTCATAAAGAGATCAGGAAT 63292 |||||| | ||||| ||| |||| ||||| | ||||||||||| ||||||||||| Sbjct 4214824 ACACATTAGTGACCAATCT---TCATTGGCTTCAACACGTTTCATAAAAAGATCAGGAAT 4214768 Query 63293 CCAAAGAGCTATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAG 63352 ||| | || | ||| ||||| | | | ||||||||| ||||| ||||| |||||||| Sbjct 4214767 CCACAATGCAAAAAACAGATCGCGCGCCCGATGTTCCTCCTTTCCAGTATTTTTTTTAAG 4214708 Query 63353 ATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGG 63412 || | || | | | ||| || ||||| || || ||||| || || | ||||||| Sbjct 4214707 GTCCAAAAATTCGAAGACATCTGAGTGCCAAGGCTCTAAGTAAATAGCAAATGCTCCAGG 4214648 Query 63413 CCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGG 63472 | ||| || |||||||| | || | || |||||| ||||||| |||||||| Sbjct 4214647 TCTTTTACCACCGCCCTGATCGACATAACGTGCCACATTATTAAAAACTCTTAACATTGG 4214588 Query 63473 -AATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATAT 63531 | |||| || ||||| |||| || || || | || | ||| | || |||||| Sbjct 4214587 TACTAAT-CCATTTGAAGTACCGTTCGTTCCACAAATTGATGTTCCTTTAGCTCGAATAC 4214529 Query 63532 TACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACG 63591 || || || || || |||||| || || || | ||||||| | | | | Sbjct 4214528 AGTGAACATTCAGTCCAATGCCACCTGCCGACTTTGAAATCATTGCGCATTGCTCAACTG 4214469 Query 63592 TGTCATAGATGCCTTCTATGCTATCATCGATCAT-GTTAAGTAGAAAACAGCTAGACATT 63650 | | | || ||||| || |||| | || |||||| ||||| || ||||| | Sbjct 4214468 ATTTAAAAATCCCTTCAATTGAATCAGACACTATAGTTAAG-AGAAAGCATGAAGACAAT 4214410 Query 63651 TGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCA 63710 || |||| | || | ||| ||| | || || || || || ||||| | ||| Sbjct 4214409 TGTGGACGGTTTGTGGCTGCAGCAAAAAGAGTTGGTGATGCATGAGTAAAAAAACGCTCA 4214350 Query 63711 GAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCG 63770 || || | |||||| || || | || || || ||||| ||| || |||| || Sbjct 4214349 GATAGCAAATTGTAGGTTTCCACTGCAGAATCAATATCTTCGCCATGTATACCTATAGCA 4214290 Query 63771 ACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAG 63830 |||||||||| || ||||| |||||||| | ||||| |||||||| | |||||| Sbjct 4214289 ACACGCATTAGCAAATGCTGTGGTCTTTCTGCTATTTTTCCATTTATTTTTAGCAAGTAA 4214230 Query 63831 GATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATA 63890 || || | || ||||| ||||| ||||| ||| ||| || || || || |||||| Sbjct 4214229 GACCGCTCAAGTGTCTTAAATCCAAAGTAGTTATATCCAAAATCACGATCATATATAATA 4214170 Query 63891 ACCGAATTGAGCTTATCCTTATATTTGTTAACTATAT 63927 | || || | |||| || || |||||||||| Sbjct 4214169 GCAGAGTTCAAGCGATCCGAATTATTTTTAACTATAT 4214133 >seq4 Length=22154029 Score = 251 bits (278), Expect = 9e-62 Identities = 570/848 (67%), Gaps = 17/848 (2%) Strand=Plus/Plus Query 33276 GACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCT 33335 ||| |||| ||||| ||| ||||| || || || |||||||| |||||||| || Sbjct 3240309 GACGTAACGCCCATACGTTGATATTCTCCAACTTTCTTCTCGAAAAAGTTAGTTTTGCCA 3240368 Query 33336 TCCAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTGTAAAtttttttAAAT 33395 |||| || || | |||||||| || ||||| | |||||| ||||| || Sbjct 3240369 TCCAGCGAGATCATCTCCATGAAGGTGAATGGATTCTTCGTATTGTAGATTTTGCCAACA 3240428 Query 33396 CCCAATTCAGAAATCAATCTATCTGCGACGAATTCTATATATGTTTTCATCATTTCACAA 33455 || | ||| | || | ||| || || ||||| |||||| ||||| | ||||| Sbjct 3240429 CCGAGTTCCACCAGCAGACGATCCGCCACAAATTCAATATATTGGGACATCAATGCACAA 3240488 Query 33456 TTCATTCCTATGAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATGGATACC 33515 ||||| || || | || || || ||||| | || ||||| ||||| ||||||| || Sbjct 3240489 TTCATGCCAATCAAATTGACGGGCAGAGCATCTGTGAGAAACTCTTGCTCAATGGTAACA 3240548 Query 33516 GCATTTGTTATAATAA--ATCTAACGGTTTCTTCACTCGGTGGATGTAATAAATGTTTAA 33573 |||| | ||||| || ||| | | | | || | || | ||||| | Sbjct 3240549 GCATCCGAGATAATCTCGATGATACGCTCCCGGC--TGGGCCGTTGCACCAAATGCCGGA 3240606 Query 33574 ACATCAA-ACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAA 33632 |||||| ||| || || || || |||| |||||||| | || || || || || Sbjct 3240607 ACATCATGACA-GCAAAGTCACAATGCAAGCCCTCGTCGCGTGAGATCAACTCATTGGAG 3240665 Query 33633 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCG 33692 ||||| || || ||||| || |||||||| || |||||||| || || || || |||| Sbjct 3240666 AACGTCAGACCTGGCATCAGACCACGCTTCTTCAGCCAAAAGATCGAGGCAAAGCTTCCG 3240725 Query 33693 GAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATA-ACCGGCGCT 33751 ||||||||||| || || |||||||| || |||| |||||| ||| | || ||| Sbjct 3240726 CTGAAGAAGATTCCCTCCACGGCAGCAAACGCGATAATTCTCTCGCCAAAGTTCGCCGCC 3240785 Query 33752 GTC-ATG-TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCT 33809 || ||| ||||| | |||||||| ||||| || ||| ||||| ||||| Sbjct 3240786 TTCGATGAAATCCAAGAGAGCGCCCAATCAGCCTTTCGCTTGACAGCGGGCATTGTTTCA 3240845 Query 33810 ATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGA 33869 |||||||| || ||||| | ||| | ||| ||| ||| |||||||||| | Sbjct 3240846 ATGGCATTGAACAGATAATCCCTTTGCTGTGGATCCCTAATATATGTATCGATCAGCACG 3240905 Query 33870 CTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCC 33929 || ||||| ||||| || | || || ||||| || ||||| || |||||||| | ||| Sbjct 3240906 CTGTACATCTCCGAGTGCACATTCTCCATGGCAATTTGAAAGCCATAGAAACAACGAGCT 3240965 Query 33930 TCGGTAATCTGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCA 33989 ||||| || ||||| || | || || || | | ||| ||||| || || ||||| Sbjct 3240966 TCGGTTATTTGCACCTCCTGGCTGAAGCGCTCGACCAGATTCTCATTAACAATGCCATCG 3241025 Query 33990 CTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTA 34049 ||| ||||| || || | ||||| ||||| | |||| | | |||| | Sbjct 3241026 GAGGCGGCAAAGAAGGCGAGCACATGCGAGATAAAGTGACGCTCGT----TATCAGTTAA 3241081 Query 34050 ----TTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGC 34105 ||| || | ||| || || | |||||| || ||||| ||||| ||||| || Sbjct 3241082 ACGTGCCCAGTCCGCCAAATCCTTGGAGAGATCCACCTCCTCCACAGTCCAGAATGAGGC 3241141 Query 34106 CTCTGCCT 34113 ||| |||| Sbjct 3241142 CTCGGCCT 3241149 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629754200985840